HHsearch 1.5 NAME d2hzaa1 FAM FILE d2hzaa1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2hzaa1.a3m DATE Tue Mar 9 00:58:06 2010 LENG 48 match states, 48 columns in multiple alignment FILT 93 out of 97 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4183 1.1832 SEQ >ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCC >sa_dssp EEEEEDEDEEDDCCDCDDEBEDEECEEDDDBCDCEEEEDEEEDEEEEE >ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC >ss_conf 954788429999999999999689988889999999999998665139 >Consensus xeRisVsLpxxLlxxlDxxvxxxgYxsRSEaIRdxiRxxlxexxxxex >d2hzaa1 XQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQH >UniRef50_C9M5I2(14-57:143) Toxin-antitoxin system protein n=2 Tax=Synergistaceae RepID=C9M5I2_9BACT E=0.0003 s/c=1.05 id=27% cov=94% --RFGVAVPESLLKLFDKRFHKQGVPTRSEALRQLIRDFVTADTWQ-- >UniRef50_A3M466(8-53:144) CopG n=14 Tax=Acinetobacter RepID=A3M466_ACIBT E=4e-05 s/c=1.07 id=33% cov=94% --RISITVPESTLNALDQKIVEQNYESRSQAIVDMINKHLIAEQAQ-- >UniRef50_O26834(3-45:140) Putative nickel-responsive regulator 2 n=5 Tax=Methanobacteriaceae RepID=NIKR2_METTH E=4e-09 s/c=1.46 id=34% cov=85% --RISMSLPKKLLNEFDEVLRDRGYQSRSKGIRDALKDYIVR------ >UniRef50_Q18I31(4-42:142) Putative nickel-responsive regulator n=10 Tax=Halobacteriaceae RepID=NIKR_HALWD E=1e-06 s/c=1.39 id=32% cov=83% ---VSVSMPEELLERIDQFADDHGYTGRSEVFREASRNLLEE------ >UniRef50_B8GWH5(13-56:162) Nickel-responsive regulator NikR n=2 Tax=Caulobacter vibrioides RepID=B8GWH5_CAUCN E=4e-08 s/c=1.35 id=31% cov=94% --RLSISLPAELMVQLDAMVAERGLPSRSQMIAELIRHELAEHSGE-- >UniRef50_A4YIW8(4-45:48) Putative transcriptional regulator, CopG/Arc/MetJ family n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YIW8_METS5 E=1e-05 s/c=1.22 id=32% cov=85% ---ITVKLPEQFLEAMDELVNTGRYETRSEVIRAAIGDFIRKE----- >UniRef50_A0RWH0(8-48:131) Transcriptional regulator n=3 Tax=Thaumarchaeota RepID=A0RWH0_CENSY E=0.0005 s/c=1.11 id=27% cov=85% ---ISVSLNSEMIRELDKLQESLGFTGRSEIVRAGIRTFVQEE----- >UniRef50_Q2RPB0(5-49:87) Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=4 Tax=Alphaproteobacteria RepID=Q2RPB0_RHORT E=9e-07 s/c=1.22 id=33% cov=96% -ERMTITMPKDLAEALRQTVAGGEYASTSEVVREALRDWMGRRDAQ-- >UniRef50_C1V617(2-46:59) Transcriptional regulator, CopG family n=12 Tax=Halobacteriaceae RepID=C1V617_9EURY E=0.0002 s/c=1.05 id=28% cov=96% -ERVTLRIPKQQIEEVERMVETGEFPNRSEAIRSAVREMLNEQQVE-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 Q 2 * * * 955 * * 5256 * 2780 * * * * 1864 4732 * * * * * 2 0 * * * * * * 3536 0 0 R 3 * * * * * * * * 3715 * * * * * 114 * * * * * 3 0 * * * * * * 4064 0 0 V 4 * * * * 1934 * * 1201 * 4071 4848 * * * * * 4756 2539 * * 4 0 * * * * * * 4349 0 0 T 5 * 6130 * * * 2499 * * * * * 5409 * * * 1014 1785 * * * 5 0 * * * * * * 4349 0 0 I 6 * * * * 5617 * * 1292 * 4447 3869 * * * * * * 1130 * * 6 0 * * * * * * 4384 0 0 T 7 3489 * * * * * 6375 * 3797 * * * * 6332 4257 917 2104 * * * 7 0 * * * * * * 4384 0 0 L 8 * * * * 5758 * * 2759 * 753 2860 * * * * * * 3282 * * 8 0 * * * * * * 4387 0 0 D 9 * * 2317 3563 * * * * * * * 5048 574 6287 * * * * * * 9 0 * * * * * * 4387 0 0 D 10 3501 * 1935 2328 * 4166 6211 * 3268 6921 * 5045 3481 4256 5406 4481 5843 6426 * * 10 0 * * * * * * 4387 0 0 D 11 5778 * 1965 2234 6624 3540 * 7002 4227 * * 4031 6086 3493 6920 2856 4485 * * * 11 0 * * * * * * 4387 0 0 L 12 5853 * * * 4435 * * 4974 * 394 3576 * * 6080 * * 5987 6144 * 6049 12 0 * * * * * * 4284 0 0 L 13 3301 * * 6562 4303 * 5670 3735 5251 761 4145 * * * * * 5503 4392 * * 13 0 * * * * * * 4284 0 0 E 14 2633 * 2588 2002 * 5028 4959 7094 3372 7132 7008 4024 * 4821 4093 4441 5590 5716 * * 14 0 * * * * * * 4284 0 0 T 15 2803 * 4940 1656 5293 4998 6207 5191 3437 6097 6199 6748 7022 3332 3471 4126 5847 7042 * * 15 0 * * * * * * 4284 0 0 L 16 * * * * 1774 * * 2626 * 1363 5995 * * * * * * 2823 * * 16 0 * * * * * * 4284 0 0 D 17 * * 254 3847 * * * * 5636 * * 4645 * * 4976 * * * * * 17 0 * * * * * * 4284 0 0 S 18 3592 * 4791 1917 * 4936 * 6606 2485 5949 6294 5585 * 2919 3575 3522 5553 5624 * * 18 0 * * * * * * 4284 0 0 L 19 5088 * 5949 5636 3895 * 4629 3252 4772 1923 2578 * * 4912 3857 * 5827 3499 * 4454 19 0 * * * * * * 4284 0 0 S 20 3861 4991 * * 6097 * * 2059 * 3824 5074 * * 5036 * 5434 * 1085 5660 * 20 0 * * * * * * 4284 0 0 Q 21 2252 * 3770 1977 * 6029 5066 5486 3887 * 6978 4709 * 4022 3319 4140 4911 5066 * * 21 0 * * * * * * 4284 0 0 R 22 3981 * 3389 2163 * 5827 5494 6877 3413 5584 5556 5608 * 3379 2830 3978 3330 6217 * * 22 0 * * * * * * 4284 0 0 R 23 * * 6207 * * 2269 3991 * 3236 3862 * 4441 * 4009 1592 4360 6481 6433 5503 6997 23 19 * 6289 * * * * 4284 0 0 G 24 5380 5501 4940 3560 7058 665 * 6374 * 6184 * 4404 * 6550 4380 5157 * 6364 * 5239 24 0 * * * * 0 * 4282 0 1000 Y 25 5232 * * * 2540 * * * * 3943 * * * * * * * 4656 * 521 25 11 * 7070 * * * * 4284 0 0 N 26 2351 * 6370 3738 6017 3793 * 5612 * 6566 6898 4467 2559 3338 * 3040 2756 7247 * * 26 32 5521 * 0 * 0 * 4284 1156 1000 N 27 * * * * * 3481 * * * * * 1572 * * * 1015 3657 * * * 27 0 * * * * * * 4284 0 0 R 28 * * * * * * * * 4996 * * * * * 167 4629 4729 * * * 28 0 * * * * * * 4284 0 0 S 29 * * * * * * * * * * * * * * * 0 * * * * 29 0 * * * * * * 4284 0 0 E 30 * * 4937 362 * * * * 5342 * * * * 2772 * 5784 * * * * 30 0 * * * * * * 4284 0 0 A 31 935 5854 * * 3666 4104 * 5117 * 3434 6321 * * * * * 6677 2735 * 5113 31 0 * * * * * * 4284 0 0 I 32 * * * * 4967 * * 624 * 3921 4984 * * * * * 6132 2270 * * 32 0 * * * * * * 4284 0 0 R 33 4666 * * * * 6103 * * 5300 * * 5670 * 5797 265 * 4819 5991 * * 33 0 * * * * * * 4284 0 0 D 34 3822 * 905 1988 6242 * * 6157 * * * 5797 * 4450 * 4966 * * * 5614 34 0 * * * * * * 4284 0 0 I 35 1446 * * * * 4746 * 4363 * 1261 3507 * * * * 5461 * 5696 * * 35 0 * * * * * * 4284 0 0 L 36 4533 * * * 5949 * * 1281 * 1731 5087 * * * * 5543 6443 2596 * * 36 0 * * * * * * 4284 0 0 R 37 6114 * * 6242 * 5321 5797 * 6332 5584 * 4494 * * 252 6353 * * * * 37 0 * * * * * * 4284 0 0 S 38 4370 * 1753 2592 * 5270 5326 6975 2913 * * 4143 * 4198 3837 4531 4415 6464 * 6060 38 25 * 5845 * * * * 4339 0 0 A 39 2428 * 4777 4006 3675 4030 5218 * 4394 2961 5564 5263 * 4898 4613 5438 5301 6196 5169 2629 39 0 * * * * 0 * 4379 0 1000 L 40 * * * * 6440 * * 2186 * 927 3668 * * 5257 * * * 2855 * * 40 10 * 7166 * * * * 4399 0 0 A 41 2184 * * 6356 * 3987 * 3177 4992 5283 7091 5449 * 3499 4684 4367 2978 2410 * 5973 41 0 * * * * 0 * 4389 0 1000 Q 42 4223 6444 4969 960 * 6710 * * 3714 6011 * * 5084 4077 2615 5478 * * * 6240 42 0 * * * * * * 4359 0 0 E 43 3532 * 2690 1602 * * 3483 * 3968 * 5651 * * 3006 3459 * 4629 * * * 43 0 * * * * * * 4282 0 0 A 44 1439 * 4248 4146 4781 * * 5449 4076 * * * * 3062 4305 3376 2869 * * * 44 0 * * * * * * 3863 0 0 T 45 2184 * * * 5239 4592 * * * 2470 * * 3576 * 2980 4876 5107 3918 2383 * 45 0 * * * * * * 3788 0 0 Q 46 4774 * 3894 1543 * 4015 * * * * * * * 1215 * 4912 5211 * * * 46 0 * * * * * * 3749 0 0 Q 47 * * 3848 414 * * * * 2999 * * * * 4181 * * * * * * 47 0 * * * * * * 3122 0 0 H 48 * * * * * * 1000 * * * * 1000 * * * * * * * * 48 0 * * 0 * * * 1404 0 0 //