HHsearch 1.5 NAME d2hsga1 FAM FILE d2hsga1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2hsga1.a3m DATE Tue Mar 9 04:26:52 2010 LENG 57 match states, 57 columns in multiple alignment FILT 109 out of 2747 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.3860 -0.4497 SEQ >ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCHHHHHHTTC >sa_dssp ECDCECABDDBECDDDCACDBDEEDEEBEEDCCEDADDBCEECDBDEDEECCDEEDE >ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCC >ss_conf 998999999948999999999836898999999999999999848479899962469 >Consensus nvTixdIAxxagvSxsTVSrxLnxxxxvsxxtrxrIxxxaxelgYxpnxxAxxLxxk >d2hsga1 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNAVARGLASK >UniRef50_B8DGA3(4-48:341) LacI family transcriptional regulator n=16 Tax=Listeria RepID=B8DGA3_LISMH E=3e-06 s/c=1.18 id=26% cov=81% -VTMQDIADRLNITKNSVSQALGNKNGVSEQTKLAVFKMADELGYK----------- >UniRef50_A6VZY6(1-54:334) Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZY6_MARMS E=1e-08 s/c=1.14 id=31% cov=96% ---MEEFAALAGVSRPTASKYFEKKDAVSPRSRMKIEAMLKEVDYRPNLLASRLMRK >UniRef50_A1SYP8(26-80:365) Transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A1SYP8_PSYIN E=6e-08 s/c=1.07 id=31% cov=96% --TLKNISQQLDVSPATISNAFNKPAQLSKLLRNKILKYCEEIGYLgPSMAARSLRT- >UniRef50_C0BQB1(10-62:340) Putative uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 RepID=C0BQB1_9BIFI E=4e-07 s/c=1.05 id=27% cov=89% ------IAKLANTTPSTVSKVINGRSGVSDETRQRIEALLKDMEYSKPPVKHALST- >UniRef50_A6EJE7(3-59:336) Putative LacI-family transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJE7_9SPHI E=3e-14 s/c=1.40 id=28% cov=102% NFNIKELAKALGLSTSTVSRAFRDNSDISKETKERILAKAREFNYQPNHYASNLREQ >UniRef50_C4ZAJ6(6-60:341) Putative uncharacterized protein n=7 Tax=Clostridiales RepID=C4ZAJ6_EUBR3 E=3e-09 s/c=1.15 id=30% cov=98% -VTFADIAEYTHFSKTTISRYFNHPDSLTLENQEKISRALDELGYKKNKLAKVLAN- >UniRef50_C0ABH0(16-74:374) Transcriptional regulator, LacI family n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ABH0_9BACT E=3e-09 s/c=1.07 id=30% cov=98% --TLRTIAREAGLSLAATSMALRNHPGIAAATRTHAQAVARRLGYHPDPklatLMQHLRTQ >UniRef50_C7LL15(6-60:328) Transcription regulator, LacI family n=3 Tax=Mollicutes RepID=C7LL15_MYCML E=4e-09 s/c=1.14 id=27% cov=98% -ISISTIAKECNVGVGTVSRYFNNG-YVSDQKKELIKKVVEKYNFSPNFAAHSIKRK >UniRef50_Q7NTN9(2-42:319) Sucrose operon repressor n=1 Tax=Chromobacterium violaceum RepID=Q7NTN9_CHRVO E=0.0002 s/c=1.15 id=31% cov=68% -------------SRTTASMVLNGHaerYRISPATVEKVERVAREHHFKPSQQA------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 3056 * * * 2082 * * * * 636 * * * * * * * * 1 0 * * * * * * 3942 0 0 V 2 6258 * * * 6359 * * 1627 * 3793 2971 * 6114 * * 6332 * 1279 * 6343 2 0 * * * * * * 4840 0 0 T 3 * * * * * 6272 * * 5789 * * 4401 5866 * 4043 2445 599 * * * 3 15 * 6590 * * * * 5115 0 0 I 4 5719 * * * 5386 * * 1478 * 1462 2792 6776 * 5186 * 6555 * 4521 * * 4 0 * * * * * 0 5127 0 1000 Y 5 3200 * 5797 4192 * 5128 6741 6347 1612 5752 * 6838 * 3813 3083 3494 3671 5773 * 4677 5 0 * * * * 0 * 5224 0 1000 D 6 4661 * 908 2182 * * 5744 6520 6895 * * 5080 * 3953 * * 4359 5244 * * 6 0 * * * * * * 5230 0 0 V 7 * * * * 4830 * * 909 * 2778 * * * * * * * 1804 * * 7 0 * * * * * * 5235 0 0 A 8 151 * * * * 5442 * * * * * * * * * 3715 * * * * 8 0 * * * * * * 5250 0 0 R 9 2953 * 3628 2621 * * * 5799 2273 6197 * 4763 * 3306 2261 6469 * 5555 * 6654 9 0 * * * * * * 5250 0 0 E 10 2737 * 6469 3287 6544 * 5160 4081 2875 2578 5068 6546 * 4276 2595 * 6457 6488 * 4198 10 0 * * * * * * 5250 0 0 A 11 1198 4727 * * 5595 5763 * 4918 * 2276 * * * * * 3611 3122 4294 * * 11 0 * * * * * * 5250 0 0 S 12 * * 4154 6079 * 734 4776 * 5408 * * 2369 * 5942 4390 6600 * * * * 12 0 * * * * * * 5316 0 0 V 13 * 4786 * * 4252 * * 4252 6537 2302 6628 * * * 6664 * 5430 901 * 3914 13 0 * * * * * * 5316 0 0 S 14 4218 * 6717 * * 4393 4335 * * * * 6540 5748 * * 373 4715 * * * 14 0 * * * * * * 5316 0 0 M 15 3684 * * 5477 * * 5231 3871 2800 5659 5431 6196 2456 4241 3459 * 3508 2516 * 5979 15 0 * * * * * * 5316 0 0 A 16 1952 6394 5748 * * 3325 * 6822 6760 * 5086 6724 4705 6212 * 1622 2688 5481 * * 16 0 * * * * * * 5316 0 0 T 17 3585 * * * * 5748 * * * 6388 * * * 6365 * 4588 286 6358 * * 17 0 * * * * * * 5316 0 0 V 18 3753 * * * * * * 2810 * 4581 * * * * * * * 432 * * 18 0 * * * * * * 5316 0 0 S 19 4089 * 4360 * * * 6422 * * * * * * * 4672 249 * * * * 19 0 * * * * * * 5316 0 0 R 20 5481 * 6038 * 4223 * 6717 5762 3375 3085 5913 3336 * 6910 955 6486 * * * 5986 20 0 * * * * * * 5316 0 0 V 21 1254 6321 * * 4957 6563 * 3549 * * * * * * * * 5469 1668 * 3283 21 0 * * * * * * 5316 0 0 V 22 * * * * 2887 * * 2836 * 531 6722 * * * * * * 6600 * 6280 22 0 * * * * * * 5316 0 0 N 23 5431 * * 6224 * 5192 4495 * 6012 6804 * 965 * 5382 2820 2699 4814 * * * 23 13 6749 * 1585 585 * * 5316 1000 0 G 24 * * 2960 4536 * 1512 4502 * 3997 * * 2034 * 5767 3579 6394 6280 * * * 24 46 4979 * 1499 630 * * 5316 2204 0 N 25 4730 * 3836 6223 * 5264 4203 * 2260 6394 * 3903 2622 5782 2888 3010 4365 * * 5460 25 93 4465 5874 1186 835 * * 5316 2549 0 P 26 4719 * 4081 3085 5762 2206 6102 * 4840 * 6562 6515 2121 6851 4412 3327 4865 7179 6923 4491 26 83 4158 * 581 1592 0 * 5141 2668 1636 N 27 4084 * 4327 5765 6883 2444 6942 6822 3865 4639 * 4514 4988 4632 2161 4286 4486 4433 * 3767 27 29 5655 * 1320 738 * * 5316 1647 0 V 28 6598 * * * 5606 * 6712 1871 5960 3415 6147 * 6717 * 6388 6287 * 977 * 5649 28 10 7142 * 1000 1000 * * 5316 1000 0 K 29 3794 * 5960 * * 5550 * * 3723 * * 4689 4479 * 3837 688 4620 * * * 29 33 5462 * 1311 744 * * 5316 1620 0 P 30 2752 * 3258 1863 * 6543 7035 6194 4551 5552 * 6287 2477 3449 6358 4555 6729 5749 6754 * 30 0 * * * * * * 5316 0 0 S 31 2648 * 3083 1516 * 5290 6563 * 2656 6560 * * 6543 5977 4366 4025 5526 6770 * * 31 0 * * * * * * 5316 0 0 T 32 4029 * * * * * * 5960 4747 3179 5644 4751 * 6408 5307 5306 727 4283 * * 32 0 * * * * * * 5316 0 0 R 33 3647 * * 5635 * * 6394 4627 2852 6059 * * * 4056 904 6754 6012 3951 * 6619 33 0 * * * * * * 5316 0 0 K 34 3970 * 3335 1826 * 5034 * 6196 2558 6321 6224 4248 * 3325 3405 5130 5168 6394 * * 34 0 * * * * * * 5316 0 0 K 35 5227 * * 4525 5637 * 4817 5056 1785 3771 * 5595 * 4590 1355 6741 * 5772 * * 35 0 * * * * * * 5316 0 0 V 36 * * * * * * * 1007 * * * * * * * * 6038 1038 * * 36 0 * * * * * * 5316 0 0 L 37 4909 * * 2850 4685 * 6958 5289 3328 2033 4094 5781 * 3107 2749 6369 4762 6540 6603 * 37 0 * * * * * * 5316 0 0 E 38 2044 * 3548 2434 * 6664 * * 3034 6038 * 5718 * 3391 2992 4177 5341 5658 * * 38 0 * * * * * * 5316 0 0 T 39 1463 * * 4254 6355 6140 * 3098 4926 3870 6224 * * * 6861 6321 4035 2422 * 4104 39 0 * * * * * * 5316 0 0 I 40 859 5522 * * * * * 3511 * 3194 3927 * * * * 6692 * 2696 * * 40 0 * * * * * * 5316 0 0 E 41 3545 * 3098 1711 6883 5221 * * 2467 6321 * 4880 * 3647 3633 4668 5076 * * * 41 0 * * * * * * 5316 0 0 R 42 3395 * 3970 1231 * 6709 * * 2717 5674 * * * 3687 3235 5230 * 5418 * * 42 0 * * * * * * 5316 0 0 L 43 6923 * * 6663 5891 * 4479 3936 * 1110 2793 6550 * 5943 5717 5180 4845 3735 * 3972 43 0 * * * * * * 5152 0 0 G 44 * * 2976 4502 * 839 3772 * 6327 * * 2618 * 6798 * 6349 * * * * 44 0 * * * * * * 5187 0 0 Y 45 * * * * 2582 * 5956 * * * * * * * * * * * 5350 336 45 16 * 6521 * * * * 5172 0 0 R 46 5949 6757 6715 4546 * * 4283 3728 3355 5043 * 5576 * 4019 2452 3106 3737 2369 * 5858 46 63 4926 6660 0 * * 0 5166 1810 1000 P 47 4118 * 5719 6384 5477 * 6635 4310 3899 4078 6540 * 866 * 4460 6088 6534 4042 * 6484 47 16 6475 * 0 * * 0 5149 1000 1579 N 48 6445 * 2663 * * * 4813 6303 * * 7001 791 5481 * 5341 2868 * 6305 * * 48 0 * * * * 921 1084 5149 0 1579 A 49 3367 * * 4532 4430 5381 4649 4763 4774 3145 5100 6669 2979 4461 2959 3800 4014 6656 * 3649 49 18 6330 * 0 * * 0 5150 1000 1000 V 50 2010 * * 7076 4069 5040 * 3926 * 2639 4920 5733 * 4641 5826 3211 5035 3098 6986 4175 50 0 * * * * 0 * 5150 0 1000 A 51 420 * * * 6774 4194 * 6999 6816 4178 * * * 6548 * 4349 6487 4755 * 6834 51 0 * * * * * * 5161 0 0 R 52 4395 * * 6429 * 5454 4739 6750 3742 5668 5903 6662 * 2807 1379 2684 5340 5057 * 6306 52 0 * * * * * * 5195 0 0 G 53 2218 * 5498 5027 6469 3578 * 6189 6661 3642 4588 4108 * 6654 3510 1667 6877 6287 * * 53 0 * * * * * * 5186 0 0 L 54 * * * 6241 5143 * * 6473 * 285 3428 * * * 6441 * * 6377 * 6652 54 0 * * * * * * 5169 0 0 A 55 2653 * * 5776 * 5557 * 5613 2611 6485 4022 4614 * 6213 1574 3573 5743 4271 * * 55 0 * * * * * * 5174 0 0 S 56 3213 * * 6815 * 3002 * * 4499 4420 * 3454 * 5586 2965 2127 2401 6780 * * 56 0 * * * * * * 5133 0 0 K 57 * * * * * * * * 1251 * * * * 2040 1571 * * * * * 57 0 * * 0 * * * 4851 0 0 //