HHsearch 1.5 NAME d2h8pc1 FAM FILE d2h8pc1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2h8pc1.a3m DATE Sat Mar 13 10:07:18 2010 LENG 57 match states, 57 columns in multiple alignment FILT 103 out of 394 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4940 1.6294 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC >sa_dssp EDEEEEDDDEEEEEDDEECEDCBEEBAEEDEEDEECECDDDEEADEDBDBDDEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC >ss_conf 951299999999999999999999999995368978237299999999999860379 >Consensus xslxxreLxxxxxxxxixixixsxliyxxExxxxxxxfxsixxaxWwaiVTxTTVGY >d2h8pc1 SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY >UniRef50_D0NUZ5(157-212:362) Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Phytophthora infestans T30-4 RepID=D0NUZ5_PHYIN E=9e-08 s/c=1.03 id=26% cov=100% -ALKKEELAVVSYLTIVIVLTSSTTIFFLENPAQPEVFTSIGTCSWWAIETITSLGY >UniRef50_UPI0001926EF2(168-223:490) PREDICTED: similar to potassium voltage-gated channel KQT-like protein 4 n=1 Tax=Hydra magnipapillata RepID=UPI0001926EF2 E=4e-05 s/c=0.87 id=29% cov=96% ---HRKELLTCYFSCIVVLLLGSYAVFLIESNRVPSDgrINNMITGLYWGIITFTTIGY >UniRef50_Q6PIU1(343-395:500) Potassium voltage-gated channel subfamily V member 1 n=28 Tax=Euteleostomi RepID=KCNV1_HUMAN E=1e-11 s/c=1.34 id=30% cov=95% ----YEEVGLLLLFLSVGISIFSTVEYFAEQSIPDTTFTSVPCAWWWATTSMTTVGY >UniRef50_C5LTX7(368-429:716) Potassium channel, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LTX7_9ALVE E=1e-07 s/c=0.93 id=25% cov=100% -SLSMDALRVPMLMLIFLVTWFASIIYWVEdvtlpdTARPAAAFASLPHAMWFSIVTISTVGY >UniRef50_D0P1S1(201-283:511) Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Phytophthora infestans T30-4 RepID=D0P1S1_PHYIN E=3e-07 s/c=0.68 id=21% cov=100% -SISIKPLTMLIFLMSIAMIIFSSAIYFAEYTDdgcradgwmgnsaavasvsasdacvcvDPNPYQGIATSFWWCIVTMSTVGY >UniRef50_A6Q3B0(183-232:526) Potassium channel protein n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3B0_NITSB E=0.0007 s/c=0.90 id=22% cov=89% ------ELYTLFMLMAFVILVSGISLYVFEDRVNP-NINSLFDAFYWALVTISTVGF >UniRef50_A7SKX7(272-325:361) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SKX7_NEMVE E=7e-08 s/c=1.08 id=25% cov=93% -----EELQLFLVCILFITVLMSSALYYAEWGSGQSQFSSIPDVFWYAVVTLSSVGY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1547 * * * * * * * * * * * * * * 1493 1724 * * * 1 0 * * * * * * 1925 0 0 A 2 1116 * * * * * * * * * * * * * * 893 * * * * 2 0 * * * * * * 3449 0 0 L 3 * * * * * * * 2352 * 493 * * * * 3418 * * * * * 3 0 * * * * * * 3802 0 0 H 4 * * * * 3535 * 804 * 3502 * * * * * 3704 2505 * * * * 4 94 * 3990 * * * * 4032 0 0 W 5 4403 * * * 2660 4631 * 4641 4602 * 4358 * * * 2950 4813 * 3898 2580 2153 5 0 * * * * * 0 4694 0 1000 R 6 5271 * 5172 3202 * 5884 5765 * 1911 * 5609 * * 3293 1338 5768 * * * * 6 0 * * * * 0 * 4944 0 1000 A 7 2765 * 3926 956 * * * 5834 * 5695 * * 3458 4053 5644 * * 3977 * * 7 0 * * * * * * 5023 0 0 A 8 3822 * * 6060 5331 * * 4126 * 558 4400 * * * * 5715 * 3529 * * 8 0 * * * * * * 5026 0 0 G 9 3844 5414 * * 4446 1989 * 3367 * 3891 3371 * * 4332 5771 3525 3364 3894 6642 5724 9 0 * * * * * * 5055 0 0 A 10 3529 5369 * * 3347 5265 * 3423 5644 2059 3046 5880 * * * 4001 3006 4349 * 4732 10 0 * * * * * * 5081 0 0 A 11 2658 4864 * * 4328 * * 3554 * 1357 4272 * 5955 * * 3175 4664 4328 * 6148 11 0 * * * * * * 5140 0 0 T 12 4831 * * * 3846 4639 * 3682 * 1443 3815 * * * * 4005 2927 3180 6281 5536 12 0 * * * * * * 5093 0 0 V 13 3927 * * * 1849 4862 * 3708 * 2191 3624 6551 * * * 5966 4601 2999 * 4246 13 15 * 6599 * * * * 5071 0 0 L 14 3776 4182 * * 1994 5858 * 2352 * 2228 5401 * * * * 4555 4858 4165 * 4727 14 0 * * * * * 0 5047 0 1000 L 15 4400 5840 * * 3665 5745 * 2635 * 1645 3207 * * * * 6767 3784 3039 5926 5120 15 0 * * * * * 0 5065 0 1000 V 16 2773 4277 * * 2895 * * 3053 * 1775 4982 * * * * 3386 * 2968 * * 16 17 6380 * 2807 222 * 0 5070 1000 1000 I 17 5675 6906 * * 4027 5441 * 1979 * 2401 3537 5623 * * * 4735 4190 2024 * * 17 0 * * * * * 0 5089 0 1000 V 18 3518 4253 6867 5972 4740 3547 * 3262 * 2341 4615 6169 5307 * * 4988 3883 2203 * 6076 18 0 * * * * 0 * 5089 0 1000 L 19 4486 4940 * * * 5446 * 2140 * 2257 3241 5952 * * * 5307 4161 1940 * * 19 13 * 6856 * * * * 5096 0 0 L 20 4823 * * * 2785 5544 * 2498 * 1872 6320 * * * * 4754 4380 2082 * 6144 20 10 7142 * 1000 1000 0 * 5117 1000 1000 A 21 4062 * * * 3095 * * 1785 * 2017 4060 * * * * 6603 3958 2942 6366 6798 21 13 6757 * 1000 1000 * * 5117 1000 0 G 22 3589 5233 * * 1161 3283 * 6005 * 4227 5333 6304 * * * 2978 7081 4001 * 4745 22 0 * * * * * * 5117 0 0 S 23 2026 * * * 6092 2132 * * * * * * * * * 1054 5672 6578 * * 23 11 7085 * 0 * * * 5117 1000 0 Y 24 3704 5636 * * 4454 4014 6484 4721 * 3330 6514 4931 * * * 2002 1947 4992 * 3987 24 15 * 6565 * * * * 5075 0 0 L 25 2276 4353 * * 4521 4650 * 3262 * 1247 4487 * * * * 6340 5022 4692 * 6729 25 20 6188 * 609 1537 * 0 5071 1535 1000 A 26 4357 * * 5379 4243 6146 * 1512 * 3258 2701 * * * * 5185 4808 2411 * * 26 0 * * * * * 0 5071 0 1000 V 27 * * * * 2315 * 4942 * * 3589 * * * 6340 * * * 6410 3703 780 27 0 * * * * * 0 5071 0 1000 L 28 5735 * 6562 * 2214 * 5662 3511 * 2562 5778 * * 4553 * 3942 * 3420 6457 2014 28 0 * * * * * 0 5071 0 1000 A 29 1536 * * * 3734 5979 * 3253 * 2639 4241 * * 6212 * 6126 5496 2457 * 6171 29 0 * * * * * 0 5071 0 1000 E 30 * * 5993 50 * * * * * * * * * 5745 * * * * * * 30 109 4294 5513 2161 365 0 * 5071 2494 1000 R 31 4018 * 6331 4728 5782 3702 3000 5654 3549 4250 5992 4265 * 3724 2291 3583 5526 * 6556 4422 31 92 4015 * 2280 332 * 0 5070 2769 1991 G 32 3704 * 2260 3429 5396 2571 4106 6096 4079 * 6020 3516 3651 6445 5606 3978 5658 * * * 32 69 4875 6297 1075 929 * 0 5070 1844 1991 A 33 2217 * 3431 3115 6112 4517 4354 4807 5053 6961 6710 5352 * 4009 3657 3936 4129 3353 * * 33 64 4530 * 3816 106 872 1141 5066 2551 2363 P 34 6094 * 4038 4573 6899 4144 5855 6197 3986 * * 2858 1851 2504 6725 3587 5440 5933 * * 34 0 * * * * 0 * 5073 0 1542 G 35 4845 * 3282 3977 6709 2603 4474 * 5504 * * 2964 1782 5267 * 4099 4200 * * * 35 167 6829 3317 1000 1000 * * 5075 1000 0 A 36 3247 6128 3712 3002 * 4742 5331 5504 3370 * * 5118 * 5781 6155 2025 2518 5886 * * 36 47 6859 5411 3459 138 654 1456 5066 1000 3146 Q 37 4418 * 3348 6871 4975 5363 5045 * 2922 5190 5180 2833 3806 2502 6567 4766 3706 4692 * 5497 37 79 4224 * 1958 429 0 * 5129 2722 2449 L 38 * 6136 * * 693 * * 2061 * 3849 6222 * * * * * * 5752 * 5253 38 21 6084 * 2322 322 * * 5075 1456 0 I 39 4227 * 4887 3894 * 3388 5446 5307 4183 6677 * 3743 4198 4366 3936 3118 2127 5752 * 4999 39 0 * * * * * * 5075 0 0 T 40 6048 * 4117 6409 * 4078 * * * * * 2825 * * * 822 2743 * * * 40 22 6048 * 2322 322 * * 5075 1000 0 Y 41 3823 * * * 3409 * * 889 * 3538 5940 * 6205 * * 6590 * 2941 * 4690 41 0 * * * * * * 5075 0 0 P 42 4368 * 6824 6677 3098 3621 * 5940 * 3602 5913 * 1104 6409 * 4936 6133 6075 4206 5217 42 15 6590 * 1000 1000 * * 5075 1000 0 R 43 3363 5810 1591 2631 * * 4986 5379 7251 7303 * 4225 * 3769 3596 5641 3561 6837 * * 43 0 * * * * * * 5075 0 0 A 44 1217 4219 * * 5035 2246 * * * * * 6136 * * * 2455 4136 5545 * * 44 0 * * * * * * 5075 0 0 L 45 4836 4787 * * 1817 6435 * 3518 * 2295 2400 * * * * 6526 * 3354 4850 6704 45 0 * * * * * * 5075 0 0 W 46 * * * * 5226 * * * * * * * * * * * * * 372 2317 46 0 * * * * * * 5075 0 0 W 47 * * * * 2471 * * * * 4892 * * * * * * * * 598 2996 47 0 * * * * * * 5075 0 0 A 48 1052 4806 * * * 3444 * 5774 * * * * * * * 2538 3255 3400 * * 48 0 * * * * * * 5075 0 0 C 49 3911 4527 5893 * 3927 * * 1316 * 3169 4127 * * * * * 5684 2259 * 6771 49 0 * * * * * * 5075 0 0 E 50 4538 * * 4577 * * * 2392 * 5893 * * * 4748 * 6577 3741 773 * * 50 0 * * * * * * 5075 0 0 T 51 4926 * * * * * * * * * * * * * * 4190 132 * * * 51 0 * * * * * * 5075 0 0 A 52 4564 * * * 5940 * * 2331 * 2258 1634 * 5893 * * 5155 4319 3103 * * 52 0 * * * * * * 5075 0 0 T 53 4359 6966 * * 6176 6651 * 6415 * 5106 4337 * * * * 2277 708 6521 * * 53 0 * * * * * * 5075 0 0 T 54 6501 * 6153 * * 5893 * * * * * 5529 * * * 5113 140 * * * 54 0 * * * * * * 5075 0 0 V 55 * * * * * * * 2901 * 3479 * * * * * * 4655 441 * * 55 0 * * * * * * 5075 0 0 G 56 * * * * * 0 * * * * * * * * * * * * * * 56 0 * * * * * * 5065 0 0 Y 57 * * * * 4128 * * * * * * * * * * * * * * 85 57 0 * * 0 * * * 5064 0 0 //