HHsearch 1.5 NAME d2gycg2 FAM FILE d2gycg2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2gycg2.a3m DATE Tue Mar 9 21:43:53 2010 LENG 71 match states, 71 columns in multiple alignment FILT 79 out of 83 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4067 -0.1710 SEQ >ss_dssp CCCCCCCCCCBCTTCCCSSSSTTTTTTSSSCCSSSSSTTTTTTSCSSCTTCCBCCBCCCCSSSCCCCBCCC >sa_dssp EEEECEDCEDCDCDECEEDEECBEDCCEDDBECEDBCECBCEEBEEDEEEDEBDBEBDACDEEDCDCDDEE >ss_pred CCCEEEEEEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEC >ss_conf 95026999999447664888641000235883999999999987741189701289999579829999869 >Consensus KxvxxxiklxixaGxAxpxPPiGpxLGxxGiNixxFckxfNxxTxxxxxgxpipVxIxvxxDrsfxxxikT >d2gycg2 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKT >UniRef50_Q23884(18-87:172) 60S ribosomal protein L11, mitochondrial n=6 Tax=Dictyosteliida RepID=RM11_DICDI E=1e-14 s/c=1.16 id=37% cov=99% KPILVRLKLIIGAGTASMTPPLGPNLGQYGINSIEFFNDFNTETKElFETGLALRVILWINVMKAFYFEL-- >UniRef50_P46766(32-81:339) 60S ribosomal protein L11, mitochondrial n=1 Tax=Acanthamoeba castellanii RepID=RM11_ACACA E=2e-07 s/c=1.14 id=31% cov=69% -----------------------PILGLYGINVKEFINDFEIKTRFINFDVIVPTLVKISKIKTFEIILKT >UniRef50_O78326(3-69:131) Ribosomal protein L11 n=1 Tax=Toxoplasma gondii RepID=O78326_TOXGO E=4e-07 s/c=0.83 id=26% cov=86% ----KIIKLILHTELTNFLSSLSSILGPIGININLFFQEYNKRIK-LKNNIDLPLHIIVYNDKSY------ >UniRef50_C5K7R9(3-72:184) Ribosomal protein L11, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5K7R9_9ALVE E=2e-16 s/c=1.24 id=33% cov=99% --VIGRFRMWVLAGQSKPSPSVGQTLGPLGINMMvQFNKELNARISTVRPKVPVQVTLVPKTDKTYAFWLRT >UniRef50_C6UMZ9(4-73:143) Putative 50S ribosomal subunit protein L11 n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UMZ9_HODCD E=2e-16 s/c=1.23 id=32% cov=100% KRKVGVVRLRLLAGAAKPAPPVSVVMGQKRINLRQFCTRFNELTARRDALDPLCVKLELYDDGGYDLVVR- >UniRef50_Q4FY96(47-116:346) Ribosomal protein L11, putative n=9 Tax=Trypanosomatidae RepID=Q4FY96_LEIMA E=1e-14 s/c=1.16 id=34% cov=99% KAVLHNWRFFIKAGKAATGPPVGQEFSKLGLKAMDFAKAFNDRTKpHFKDDIELIVRIQVYFDKSYIFRI-- >UniRef50_P62444(4-74:146) 50S ribosomal protein L11 n=16 Tax=Rickettsiales RepID=RL11_WOLPM E=6e-13 s/c=1.06 id=34% cov=96% --IVAKINLLMEAGKAVPGPKIASVLGPRGIPVPKFCEAFNKVTsaanANYKVGDLVTVRISIKDDRSHDFTV-- >UniRef50_Q3INI5(2-66:163) 50S ribosomal protein L11P n=12 Tax=Halobacteriaceae RepID=RL11_NATPD E=1e-12 s/c=1.14 id=32% cov=93% ---AGTIEVLVAGGQADPGPPLGPELGPTPVDVQAVVNEINDQTEAFD-GTEVPVTIDYDDDGSFDIDV-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 165 * * * * * 3211 * * * * * 1 0 * * * * * * 3588 0 0 K 2 4292 * 3755 3429 * * * * 1096 * * * 3794 5671 2709 5447 4424 * * * 2 0 * * * * * * 3693 0 0 V 3 * * * * * * * 2067 4006 3476 * * * * * * * 870 * 4012 3 41 5165 * 1000 1000 * * 3922 1000 0 Q 4 3366 * * 5408 * 5751 * 3459 3849 3235 5607 * 5291 3445 4212 3600 5092 1782 * * 4 0 * * * * * * 4028 0 0 A 5 2050 * * 4590 * 1806 4796 * 2746 * * 5394 * 6569 4028 3592 4829 4953 * * 5 0 * * * * * * 4171 0 0 Y 6 * 6338 * * 3719 * * 3776 3081 4794 * 4285 * * 2809 6001 3051 1696 * 4457 6 0 * * * * * * 4144 0 0 V 7 5310 * * * 3408 * * 1302 * 3055 6189 * * * 6151 * * 1724 5365 * 7 33 5471 * 2441 294 * * 4116 1333 0 K 8 * * 5421 4777 * * * * 919 5618 5646 4146 * * 1670 * * * * * 8 0 * * * * * * 4116 0 0 L 9 5232 * * * 5514 * * 3519 * 724 4765 * * * * * 3029 3330 * * 9 0 * * * * * * 4166 0 0 Q 10 5556 * * 5026 5533 * 5662 2781 5186 3114 4662 4860 * 2352 3006 * 3718 3611 5285 4630 10 0 * * * * * * 4179 0 0 V 11 * * * * 4882 * * 1504 * 2376 4779 * * 5461 * * * 1467 * * 11 0 * * * * * * 4191 0 0 A 12 4181 * * 2380 * 5006 4723 6352 3576 2845 * 4659 1815 6143 4945 6964 4198 * * 5997 12 0 * * * * * * 4201 0 0 A 13 544 * * * * 2071 * * * * * * * * * 4714 4723 * * * 13 0 * * * * * * 4201 0 0 G 14 5163 * * 4723 * 317 * * * * * 5736 * 3933 6818 4699 * * * * 14 0 * * * * * * 4201 0 0 M 15 3386 * * 6633 * 5203 * 6089 1473 4074 4156 3836 * 2746 5782 3618 4542 6062 * * 15 0 * * * * * * 4223 0 0 A 16 118 * * * * * * * * * * * * * * 5329 4791 5851 * * 16 0 * * * * * * 4223 0 0 N 17 4060 * 5606 * * * * * 2194 * 5645 2547 * * 4775 2247 2114 4986 * * 17 0 * * * * * * 4223 0 0 P 18 3004 * * * 4791 * * * * * 5560 * 590 * * 4305 4308 4246 * * 18 62 * 4571 * * * * 4223 0 0 S 19 1853 * * * * 1582 * * 5254 4769 * 4995 * 6138 * 2339 3588 * * * 19 34 * 5407 * * * 0 4207 0 1571 P 20 5662 * * 4056 * * * * * * * * 240 * * 4132 * * * 5924 20 49 * 4893 * * 1578 589 4166 0 1973 P 21 4128 * * * * 5664 * * 3688 * * * 392 * * 3583 * * * * 21 0 * * * * 1634 561 4146 0 1873 V 22 * * * * 5751 * * 1920 * 1471 4972 * * * * * * 1623 * * 22 0 * * * * 0 * 4207 0 1571 G 23 4786 * * * * 177 * * * * * * * * * 3654 * * * * 23 0 * * * * * * 4223 0 0 P 24 * * * * * * * * 5194 * * * 592 2753 * 3086 * 4534 * * 24 0 * * * * * * 4264 0 0 A 25 1339 * * 4666 * * * 3521 * 6059 4177 5044 * 3890 * 3935 2738 3397 * * 25 0 * * * * * * 4264 0 0 L 26 * * * * 4757 * * 5920 * 180 4534 * * * * * * 5605 * * 26 0 * * * * * * 4264 0 0 G 27 4609 * * * * 182 * * * * * * * * * 4053 5874 * * * 27 0 * * * * * * 4264 0 0 Q 28 3911 * * 5945 * 5055 * * 4210 5550 5861 * 1659 1249 * 4840 5495 * * * 28 0 * * * * * * 4279 0 0 Q 29 4439 * * * 4349 * 4771 4782 3249 2115 5249 * * 5454 2286 * 5689 3858 5783 2888 29 0 * * * * * * 4279 0 0 G 30 6628 * * * * 248 * * 4599 * * 6234 5689 5733 4178 * * * * * 30 0 * * * * * * 4279 0 0 V 31 * * * * * * * 1048 * 2167 * * * * * * * 1767 * * 31 0 * * * * * * 4279 0 0 N 32 6339 * 5689 * * * * * 3590 * * 304 3968 * * 6477 * * * * 32 0 * * * * * * 4279 0 0 I 33 4248 * * * * * * 1020 * 3116 2488 * 5045 * * 4872 * 3378 * * 33 0 * * * * * * 4279 0 0 M 34 3332 * * * * 3131 * 3835 4955 * 1339 3989 3716 5137 3802 6407 * 4716 * * 34 34 5421 * 0 * * * 4227 1000 0 E 35 3157 * 2464 2177 * 4780 6058 * 3757 4244 * 4457 * 2181 * 6599 5012 * * * 35 0 * * * * * * 4227 0 0 F 36 * * * * 335 * * 5733 * * * * * * * * * 2409 * * 36 0 * * * * * * 4227 0 0 C 37 5082 1028 * * 3704 * * 3350 5197 * 5518 5421 * * * 5795 3914 2752 * * 37 0 * * * * * * 4227 0 0 K 38 4963 * 6600 4476 * * * * 747 * * 2857 * 3956 4064 * 4194 * * * 38 10 7216 * 3322 152 * * 4227 1000 0 A 39 2275 * 2332 1435 * * * * 3345 * * 6407 5762 4614 4492 6513 * * * * 39 0 * * * * * * 4227 0 0 F 40 * 5850 * * 524 * * 2662 * 5421 * * * * * * * * * 3240 40 0 * * * * * * 4227 0 0 N 41 * * 5197 5513 * * * * * * * 73 * * * * * * * * 41 32 5511 * 1585 585 * * 4227 1000 0 A 42 1890 * 2674 1767 * 5408 * 5513 3153 6093 * 4330 * * 6735 5800 5056 * * * 42 0 * * * * * * 4227 0 0 K 43 2376 * * 4991 * * * * 1971 3090 * 4487 * 4284 1789 * * 5767 * * 43 0 * * * * * * 4227 0 0 T 44 * * * * * * * 4044 * * * * * * 5511 3918 232 * * * 44 60 5767 5462 2000 415 * * 4227 1000 0 D 45 1771 * 4630 3908 * 6598 * * 1444 * * * * 3370 4010 3984 * * * * 45 117 5945 4026 0 * 0 * 4232 1000 1393 S 46 3634 * 1902 3333 4513 5353 3521 6022 4022 * * 3317 * 4069 5390 4194 3607 * * * 46 279 4390 2965 0 * 0 * 4087 1747 1761 I 47 * * 6603 * 2084 * * 2221 6117 2824 4202 * * 5206 5263 * * 4515 6133 2196 47 198 * 2960 * * 0 * 4145 0 2269 E 48 5109 5665 3564 2824 5206 * 5376 4416 1593 6407 6066 5408 * 3440 2893 5717 * * * * 48 208 * 2894 * * 0 * 4241 0 2739 K 49 2374 * 4081 3722 5497 3962 5423 6865 3942 5711 4476 3450 2642 4536 5108 5939 4625 4501 * * 49 0 * * * * 333 2280 4197 0 2639 G 50 * * 3006 4109 * 674 * * 4793 4974 * 3230 * * * 5946 * * * * 50 25 * 5836 * * * 0 4214 0 1000 L 51 6508 * 3280 5606 7149 * * 2617 4131 2733 2894 * * 6774 * 4966 3014 2462 * 7163 51 57 * 4694 * * 1021 979 4199 0 1525 P 52 4809 * 4078 4757 * * * 3418 3975 4191 * 7135 1002 3760 * 5091 5853 5082 * * 52 0 * * * * 0 * 4265 0 2154 I 53 * 6534 * * * * * 1781 * 1663 5346 * * * * * 6218 1538 * * 53 0 * * * * * * 4227 0 0 P 54 6411 4492 * * * 5388 * 4857 * * * 4558 582 4269 3758 5518 5192 * * * 54 0 * * * * * * 4227 0 0 V 55 4574 4092 * * * * * * * 4745 * * * * * 6361 3215 430 * * 55 14 6667 * 0 * * * 4227 1000 0 V 56 * * 4780 2968 6283 * 4166 3450 2587 5026 5671 * * 4078 2931 * 2779 3024 * * 56 0 * * * * * * 4227 0 0 I 57 * * * * * * * 727 * 2931 5762 * * * * * * 2021 * * 57 0 * * * * * * 4227 0 0 T 58 4883 * 4786 3652 7479 * 5118 3108 4591 5183 * 4961 * 4857 5697 3032 1675 4250 5553 4807 58 12 * 6903 * * * * 4227 0 0 V 59 3377 * * * 5997 * * 2084 * 3538 * 6650 4246 * * 5398 * 1201 * 4479 59 49 5875 5928 0 * 0 * 4232 1000 1000 Y 60 * * 3713 5194 2716 * * 6123 2641 5125 6249 2912 * * 7207 5496 5386 6614 * 1591 60 12 6886 * 0 * 0 * 4216 1000 1000 A 61 4111 * 2323 3474 5958 5073 * 6577 3467 5892 * 3552 2281 4625 * 4533 4035 4238 * * 61 0 * * * * * * 4227 0 0 D 62 * * 327 6236 * 5945 * 5513 * * 5553 5795 4672 6230 * 4561 5880 * * * 62 105 4071 6562 230 2760 * * 4227 1780 0 R 63 5977 * * * * 3780 * * 1402 * * 5029 * 5355 1066 * * * * * 63 0 * * * * 0 * 4293 0 1000 S 64 5554 * * 4384 * 4496 * * 3714 * * 6403 * * * 1039 1681 * * * 64 0 * * * * * * 4296 0 0 F 65 * * * * 928 * 4851 4895 5317 * * * * * * * * 6554 * 1433 65 0 * * * * * * 4296 0 0 T 66 4347 * 1952 2287 * * 5355 4384 3400 5719 * * * 5586 4358 3966 2937 6064 * 5485 66 0 * * * * * * 4201 0 0 F 67 6058 * * * 1186 * * 2363 * 2257 5536 * * * * * * 4707 4669 4544 67 0 * * * * * * 4189 0 0 V 68 5558 * 3819 2483 6648 * * 2532 4067 4836 * 3858 * 7080 4341 3953 4327 2632 5074 5615 68 0 * * * * * * 4165 0 0 T 69 * 6496 * * * * * 1464 * 2435 4200 * * * * * 3784 1809 * 5104 69 0 * * * * * * 4165 0 0 K 70 * 4708 * * 5232 4719 4050 * 871 * * 5187 * * 1928 * * * * * 70 0 * * * * * * 3849 0 0 T 71 * * * * * * * * * * * * * * * 2554 269 * * * 71 0 * * 0 * * * 3476 0 0 //