HHsearch 1.5 NAME d2guka1 FAM FILE d2guka1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2guka1.a3m DATE Tue Mar 9 01:59:28 2010 LENG 111 match states, 111 columns in multiple alignment FILT 18 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.3950 -0.6805 SEQ >ss_dssp CCSCHHHHHHHHHHHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTTCCEEEECCTTSSEEEEEEECHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHTTCCH HHHHHHHHHHC >sa_dssp EECDECBEDABECADCCDEEECDAACBDACDECCDDACDCADEDEBDCBDBECEEEEDCBAAAACEECBEDADEBADEDDCEDBDBDCCCDBBCBBEDED EDBDDDCEEDE >ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCHHHCCCHHHEEEEECCCCHH HHHHHHHHCCC >ss_conf 9761368999999999863623567754187889999999975695167774489863899965967999999972478621239011133300107047 99999985079 >Consensus xxxxxxlxvFxhhiYExxKGvRxLxLxTxxxxxxxxxxxrLxxxxIxYxixxxxxxxxvNvFFGxxxCixxirxfxxxrxLxxltpEeDFiLGxlLGYDx xxQCxRYlxrk >d2guka1 QTLNSDLRVFXHHIYEFEKGVRSXVLATLANDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFGCKECXEAIRLFVSGRSLNSLTPEEDFIIGAXLGYDI CRQCERYCRRK >UniRef50_C9M680(1-103:133) Putative uncharacterized protein n=2 Tax=Synergistaceae RepID=C9M680_9BACT E=2e-14 s/c=0.78 id=40% cov=94% ------MTVFRHHLYEYDKGLRRLVLHTAPESNRLEMETILRKQGVAYLFVPLSNGH-VNVFFGDKDCVDVVKSFGTTR-LSDLTDEQDFMLGIMLGYDR QVQCRRYLARR >UniRef50_Q21D82(3-113:145) Putative uncharacterized protein n=5 Tax=Rhodopseudomonas palustris RepID=Q21D82_RHOPB E=5e-27 s/c=1.09 id=36% cov=98% QSIDLNgaaLKIFNHHLYELSKGLRPLAMMTLSAAAAAQVIARLEGIGIAHHVHEAC-PERVNVVFGSRPAVKAVRQFMV-RPLCELSAEHDFMLGVLLG YDREMQCARYLSR- >UniRef50_A7IDJ1(32-133:147) Putative uncharacterized protein n=4 Tax=Proteobacteria RepID=A7IDJ1_XANP2 E=2e-26 s/c=1.18 id=43% cov=93% ------MRLFQHHVYEYGRGVRALFLMTLCRAELPLVLARLGRHGIDHFVQEVS-PVKVNLFFGRPA-FVAVARAVVTRPLNTLTAEEDFMLGTLLGYDK EQQCRRYLGR- >UniRef50_D1AQV9(13-116:120) Putative uncharacterized protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQV9_SEBTE E=5e-26 s/c=1.13 id=45% cov=95% -----NYELFAHHIYELNKGLRHLVLHTAPVDTMGYMVKKLEKNSISFFVQKVSN-DKCNLFFGEKECIDIIKKF-NKTSLKKYTPEEDFILGILLGYDP LKQSKRYLKFK >UniRef50_C8WDZ0(10-108:120) Putative uncharacterized protein n=3 Tax=Zymomonas mobilis RepID=C8WDZ0_ZYMMN E=7e-25 s/c=1.15 id=42% cov=90% ---------FSQYLYEYHKGVRLLFLLTMTPHEAMAVQKKLEKESVDYFIQKVSLT-KVNVFFGRSPCIETIRHIVT-RPLVDLTPEQDFILGSLLGYDR IQQCERYLKQ- >UniRef50_C3WA80(8-111:114) Putative uncharacterized protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WA80_FUSMR E=6e-24 s/c=1.07 id=41% cov=95% -----ELGVFFHMMYELNKGLRSLALLTTTTENFEIIKERLDRCSYEYILENLKS-GYVNIFFGTKECIEVLKKF-KKNSLRDFSPEEDFILGVLLGYNV QQQCKRYINRK >UniRef50_Q8TMF8(16-124:135) Predicted protein n=6 Tax=cellular organisms RepID=Q8TMF8_METAC E=3e-29 s/c=1.18 id=40% cov=99% RSLDGNMQVFMHHIYEFQKGLRDLILHTTHIRFLNDITATLQKKDIPYIIHPV-GEKNINVFFGNEKCIRVINN-IGNKKLSQYTDEEDFILGIMLGYDR LQQCERYIQRK >UniRef50_C1SIE3(3-106:124) Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE3_9BACT E=9e-27 s/c=1.15 id=36% cov=95% ---DTNLRLFSHMVYEYKKGVRRLAMYTCSENECEFCIKKLEKSEITYMV-ATAGDGKSNIFFGDCPCISILESF-GKEKLNEFDQKEDFILGILLGYDV TRQCERYIS-- >UniRef50_C2MA74(1-110:119) Putative uncharacterized protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA74_9PORP E=2e-26 s/c=1.08 id=47% cov=89% -------------VYEFQKGIRPLFLCTVSREVAPLLMRRLERAGIAYHLEEISSVSpRVNLFFGKELCIAIISEMVRGRSLTMLSPEEDFILGTLLGYD TCQQCERYQRRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 2373 * * * * * * * * * 747 2244 * * * * * 1 0 * * * * * * 2252 0 0 T 2 2385 * * * * * * * * * * * * * * 1190 1433 * * * 2 0 * * * * * * 2252 0 0 L 3 * * * * * * * 1521 * 995 * * * * * * * 2738 * * 3 0 * * * * * * 2326 0 0 N 4 * * 828 * * * * * * * * 3056 1660 * * * * * * * 4 0 * * * * * * 2525 0 0 S 5 3204 * * * * 1180 * * * 3059 * * * * * 3242 2928 3429 * * 5 0 * * * * * * 2637 0 0 D 6 * * 2576 1582 * * * * * * * 1339 * * * * * 3281 * * 6 149 3352 * 1585 585 * * 2823 1000 0 L 7 * * * * * * * 2934 * 1310 1343 * * * * * * * * 3802 7 0 * * * * * * 3018 0 0 R 8 * * * 2890 * 3607 * * 1703 * * * * 3809 1556 * 3956 * * * 8 0 * * * * * * 3018 0 0 V 9 * * * * * * * 2405 * 2190 * * * * * * * 756 * * 9 0 * * * * * * 3018 0 0 F 10 * * * * 171 * * * * 3158 * * * * * * * * * * 10 0 * * * * * * 3048 0 0 X 11 3811 3986 * * 3602 * * 3998 * 3131 2957 2842 * 3893 3972 2270 * * * * 11 0 * * * * * * 3021 0 0 H 12 * * * * * * 358 * * * * 2645 * 4058 * * * * * * 12 0 * * * * * * 3048 0 0 H 13 * * * * * * 458 * * 4096 2704 * * * * * * * * 4058 13 0 * * * * * * 3048 0 0 I 14 * * * * * * * 1565 * 2056 3804 * * * * * * 1514 * * 14 0 * * * * * * 3083 0 0 Y 15 * * * * * * * * * * * * * * * * * * * 0 15 0 * * * * * * 3083 0 0 E 16 * * * 0 * * * * * * * * * * * * * * * * 16 0 * * * * * * 3083 0 0 F 17 * * * * 1812 * * * * 1702 * * * * * * * * * 1294 17 0 * * * * * * 3083 0 0 E 18 * * 4120 3182 * 4082 4092 * 2166 * * 2916 * 3014 4143 3008 * * 4194 * 18 0 * * * * * * 3083 0 0 K 19 * * * * * * * * 188 * * * * * 3030 * * * * * 19 0 * * * * * * 3083 0 0 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 3083 0 0 V 21 * * * * * * * 3015 * 1233 * * * * * * * 1150 * * 21 0 * * * * * * 3083 0 0 R 22 * * * * * * * * * * * * * * 0 * * * * * 22 0 * * * * * * 3110 0 0 S 23 4136 * 3984 * * * 4050 * * 4256 * 2721 2216 3380 2976 2497 * * * * 23 0 * * * * * * 3110 0 0 X 24 * * * * * * * * * 239 2711 * * * * * * * * * 24 0 * * * * * * 3086 0 0 V 25 2077 * * * 2555 * * 3105 * * * * * * * 4103 * 1257 * * 25 0 * * * * * * 3110 0 0 L 26 * * * * * * * * * 471 1845 * * * * * * * * * 26 0 * * * * * * 3110 0 0 A 27 4190 4037 * * * * 1810 * * 2152 3209 * * * * * * * * 1910 27 0 * * * * * * 3110 0 0 T 28 * * * * * * * * * * * * * * * * 0 * * * 28 0 * * * * * * 3110 0 0 L 29 2564 3809 * * 4405 * * 4283 * 1940 2664 * * * * * 2461 4037 * * 29 0 * * * * * * 3110 0 0 A 30 3327 4136 * * * * 3984 * 4355 * * 3403 2172 * * 2090 2473 * * * 30 0 * * * * * * 3110 0 0 N 31 4287 * * 2486 * * * 3984 2711 * * 4190 4256 * 2585 * 3846 2244 * * 31 0 * * * * * * 3110 0 0 D 32 2588 * 3118 1868 * 4244 4256 * 3380 * * 3809 * * 3984 3201 * * * * 32 0 * * * * * * 3110 0 0 D 33 3192 * 4190 2098 3984 * 4402 * 4244 * * 2997 * * * 4478 4050 4037 * 2762 33 0 * * * * * * 3110 0 0 I 34 2256 3809 * 2802 3846 * * 4190 * 3058 3144 * * 4237 4165 4103 4283 * * * 34 0 * * * * * * 3110 0 0 P 35 2725 * 4355 2411 * 2543 * * * 4165 4256 3984 2158 * * 4478 * * * * 35 0 * * * * * * 3110 0 0 Y 36 4256 * 3984 3204 2220 * * 3846 * 2563 * * * 3262 * * 4478 4103 * 3118 36 0 * * * * * * 3110 0 0 A 37 1726 3809 * * * * * 2428 * 4037 3106 * * * * * * 1924 * * 37 0 * * * * * * 3110 0 0 E 38 * * * 2612 * * * 2220 3846 3207 4037 * * 4256 * * 3108 2220 * * 38 0 * * * * * * 3110 0 0 E 39 1612 * * 3008 * 4283 4237 * 2102 * * 4405 * * 3208 * 4165 * * * 39 0 * * * * * * 3110 0 0 R 40 * * * * * * * 4165 1794 * * * * * 755 * 3984 * * * 40 0 * * * * * * 3110 0 0 L 41 * * * * * * * * * 0 * * * * * * * * * * 41 0 * * * * * * 3110 0 0 R 42 * * 3846 1356 * 4136 * 4355 4478 * * * * 3984 2209 4283 * 4103 * * 42 0 * * * * * * 3110 0 0 S 43 * * * * * 4287 2744 * 1723 * * 3380 * * 1533 4190 * * * * 43 0 * * * * * * 3110 0 0 R 44 4037 3846 * 3177 4244 * 3186 3379 3984 * * 4050 * 2328 3235 3809 * * * * 44 0 * * * * * * 3110 0 0 Q 45 * * 3984 3027 * 1394 * * 4355 * * 3403 * 4190 4237 2456 * * * * 45 0 * * * * * * 3110 0 0 I 46 * * * * * * * 475 * * * * * * * * * 2244 * 3846 46 0 * * * * * * 3110 0 0 P 47 1884 * 2257 3048 * * * * * * * 4355 2548 * * 3215 3809 * * * 47 0 * * * * * * 3110 0 0 Y 48 * * * * 4050 * 3209 * * * * * * * * * * * * 266 48 0 * * * * * * 3110 0 0 F 49 * * * * 1630 * 2253 2461 * 3279 3809 * * * * * * 4237 * 4103 49 0 * * * * * * 3110 0 0 A 50 4190 * * * 4165 * * 1455 * 2938 * * * * * * * 1343 * * 50 107 * 3809 * * * * 3110 0 0 Q 51 * * * 2807 * * 1526 * * * * * * 1153 * * * 4054 * * 51 85 * 4123 * * 0 * 3028 0 1000 P 52 3737 * * 1577 * * * * 3069 * * 3790 1328 * * * * * * * 52 0 * * * * 0 * 3087 0 1000 T 53 1976 * * * * * * 3134 * 2997 * * * * * * 2987 1395 * * 53 169 * 3178 * * * * 3110 0 0 P 54 2833 2586 * * * 2499 * * 3719 * * * 3079 * * 1635 * * * * 54 264 * 2580 * * 0 * 3026 0 1489 N 55 * * * * * 2222 * * * 3936 * 1036 3539 * * 2768 * * * * 55 430 * 1956 * * 0 * 2995 0 1473 T 56 3812 * 3452 3590 * 2819 * * 3870 * * * 2426 * * * 1832 3691 * * 56 339 * 2256 * * 0 * 2946 0 1903 E 57 * * 2947 2435 * 2653 2973 * 2849 * * 4153 * * * 2899 * 3837 * * 57 225 3776 3803 0 * 0 * 3018 1000 1765 R 58 * 4217 * * * * * * 1262 * * 3900 * * 1826 * 3237 * * 3751 58 0 * * * * 0 * 3078 0 1000 T 59 * 4050 * * * * * 1915 * 3246 * * * * * 3809 4190 1175 * * 59 0 * * * * * * 3110 0 0 N 60 * * * * * * * * * * * 0 * * * * * * * * 60 0 * * * * * * 3110 0 0 L 61 * * * * * * * 2379 * 1410 * * * * * * * 1213 * * 61 0 * * * * * * 3110 0 0 F 62 * * * * 242 * * * * * * * * * * * * 2696 * * 62 0 * * * * * * 3110 0 0 F 63 * * * * 0 * * * * * * * * * * * * * * * 63 0 * * * * * * 3110 0 0 G 64 * * * * * 0 * * * * * * * * * * * * * * 64 0 * * * * * * 3110 0 0 C 65 4244 4190 2976 4050 * * 4237 * 3208 * * 3984 * * 1667 3379 3846 * * * 65 0 * * * * * * 3110 0 0 K 66 3403 3809 * 3010 * * * * 1789 * * * 2179 * 3379 3269 * * * * 66 0 * * * * * * 3110 0 0 E 67 2623 * 3201 1377 * * * * 3984 4037 * * 2186 * * * * * * * 67 85 * 4136 * * * * 3110 0 0 C 68 2563 267 * * * * * * * * * * * * * * * * * * 68 0 * * * * 0 * 3075 0 1000 X 69 * * * * 4075 * * 846 * 4134 4308 * * * * * * 1853 * * 69 0 * * * * * * 3086 0 0 E 70 3134 * 2247 2090 * * * * 2761 * * 4355 * * 3984 3809 4244 4136 * * 70 0 * * * * * * 3110 0 0 A 71 1289 * * * * * * 2376 * * * * * * * * 3269 1765 * * 71 0 * * * * * * 3110 0 0 I 72 4103 * * * * * * 1367 * 2379 * * * * * * * 1467 * * 72 0 * * * * * * 3110 0 0 R 73 4136 * * 3809 * * * * 2077 * * 3984 * * 1128 3134 * * * * 73 72 * 4355 * * * * 3110 0 0 L 74 * * * 3993 * * 2641 * 2392 3154 * 3898 * 4238 2512 2485 * * * * 74 100 * 3898 * * 0 * 3097 0 1000 F 75 4054 * * * 601 * * 2606 * * 3107 * * * * * * * * * 75 349 * 2219 * * 0 * 3035 0 1000 V 76 * 3905 * * * 2863 * 2336 * 1976 3993 * * * * * * 1833 * * 76 85 * 4121 * * 0 * 2878 0 1780 S 77 * * * * * 2351 * 4220 3815 * * 4003 * * 3085 4131 2127 2229 * * 77 350 * 2214 * * 0 * 3103 0 1000 G 78 * * 4010 2883 * 1828 * * 2074 * * 2859 * * * * 2782 * * * 78 219 * 2828 * * 0 * 3036 0 2069 R 79 * * * 3731 * * * * 2479 * * 3738 * 4230 1011 * 3048 * * * 79 91 * 4030 * * 0 * 3050 0 1267 S 80 * * 4049 * * * * * 2341 * * * 1048 * * 1950 * * * * 80 0 * * * * 0 * 3078 0 1000 L 81 * * * * * * * * * 0 * * * * * * * * * * 81 0 * * * * * * 3110 0 0 N 82 * 2696 * * * * * * 4050 * * 1404 * * 3031 2540 4037 4256 * * 82 0 * * * * * * 3110 0 0 S 83 * * 1793 2578 * * 4402 * 2255 * 4037 * * 3984 * 3235 4136 * * * 83 0 * * * * * * 3110 0 0 L 84 * * * * 2828 * * * * 443 * * * * * * * * * 3016 84 0 * * * * * * 3110 0 0 T 85 * * 3809 * * * * * * * * * * * * 1377 879 * * * 85 0 * * * * * * 3110 0 0 P 86 2709 * 2540 * * * * * * * * * 728 3809 * * * * * * 86 0 * * * * * * 3110 0 0 E 87 * * * 107 * * * * 3809 * * * * * * * * * * * 87 0 * * * * * * 3110 0 0 E 88 * * * 654 * * 2696 * * * * * * 2252 * * * * * * 88 0 * * * * * * 3110 0 0 D 89 * * 0 * * * * * * * * * * * * * * * * * 89 0 * * * * * * 3110 0 0 F 90 * * * * 0 * * * * * * * * * * * * * * * 90 0 * * * * * * 3110 0 0 I 91 * * * * * * * 556 * * 1905 * * * * * * 4244 * * 91 0 * * * * * * 3110 0 0 I 92 * * * * * * * 4190 * 81 * * * * * * * * * * 92 0 * * * * * * 3110 0 0 G 93 * * * * * 0 * * * * * * * * * * * * * * 93 0 * * * * * * 3110 0 0 A 94 2003 * * * * * * 1466 * * * * * * * 3250 3085 2594 * * 94 0 * * * * * * 3110 0 0 X 95 * * * * * * * * * 712 1360 * * * * * * * * * 95 0 * * * * * * 3086 0 0 L 96 * * * * * * * * * 0 * * * * * * * * * * 96 0 * * * * * * 3110 0 0 G 97 * * * * * 0 * * * * * * * * * * * * * * 97 0 * * * * * * 3110 0 0 Y 98 * * * * * * * * * * * * * * * * * * * 0 98 0 * * * * * * 3110 0 0 D 99 * * 104 * * * * * * * * 3846 * * * * * * * * 99 0 * * * * * * 3110 0 0 I 100 * * * * * * * 1995 4136 4283 * * 4050 * 1401 * 4037 2828 * * 100 0 * * * * * * 3110 0 0 C 101 * 1925 * 2243 * * * 4256 * 3016 4237 * * 2997 3322 * 3809 * * * 101 0 * * * * * * 3110 0 0 R 102 4355 * * * * * * * 2589 4405 3379 * * 1292 2494 * * 4165 * * 102 0 * * * * * * 3110 0 0 Q 103 * * * * * * * * * * * * * 0 * * * * * * 103 0 * * * * * * 3110 0 0 C 104 * 90 * * * * * * * * * * * * * 4050 * * * * 104 0 * * * * * * 3110 0 0 E 105 2746 * * 1139 * * * * 2145 * * * * * 3150 * * 4103 * * 105 0 * * * * * * 3110 0 0 R 106 * * * * * * * * * * * * * * 0 * * * * * 106 0 * * * * * * 3110 0 0 Y 107 * * * * * * * * * * * * * * * * * * * 0 107 0 * * * * * * 3110 0 0 C 108 * 2003 * * * * * 2293 * 1043 * * * 4037 * * * * * * 108 0 * * * * * * 3110 0 0 R 109 4165 * 4355 4103 * 4136 * * 1890 * * 3097 * 3179 3111 3029 4478 * * * 109 0 * * * * * * 3110 0 0 R 110 * * * * 3948 * * * 2603 * * * * 4163 484 * * * * * 110 0 * * * * * * 3028 0 0 K 111 * * * * * * * * 337 * * * * * 2264 * * * * * 111 0 * * 0 * * * 2651 0 0 //