HHsearch 1.5 NAME d2gf5a1 FAM FILE d2gf5a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2gf5a1.a3m DATE Mon Mar 8 16:46:25 2010 LENG 103 match states, 103 columns in multiple alignment FILT 117 out of 524 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.9 EVD 0.3942 -1.5760 SEQ >ss_dssp CCSTTHHHHHHHHHHHHHSCCTTHHHHHHHTTCCHHHHHHHHHHSSSCSHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH HHC >sa_dssp EEEDCCDCADDACEDACEDCCDCBCDAADECEADDECAEDCCEECDEDEECBBEBBBECABEECDEEBEBDCABDAAECADCEEBBEEACDCCEDCCEED EEE >ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC CCC >ss_conf 9875588699999999999425999999991989999999998578998999999999999832880129999999998798689999999573200001 479 >Consensus gxxxxeexlxxxfxxiaxxlgxxWxxlarxLglsxxxIxxIxxxxxxxxxxxxxxmLxxWxxxxgxxatxxxLxxaLxxxxxxdiaexixxxxxxxxxxx xxg >d2gf5a1 GAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEVQQARDLQN RSG >UniRef50_UPI00019247E3(9-92:722) PREDICTED: hypothetical protein n=1 Tax=Hydra magnipapillata RepID=UPI00019247E3 E=1e-12 s/c=0.88 id=18% cov=72% ---------------VSYKIGSDWLQWGRFLGLSDSDLNNIGSDN-VKCYEKADNVFKKWKQMNGNS-SWEQLKKELVAFRRPDIVVEIE---------- --- >UniRef50_A7RG62(174-249:733) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RG62_NEMVE E=4e-07 s/c=0.73 id=18% cov=74% ---------------IKTELGNNWRGVAGHMGLTSEEVDRLDD--SGKMDSLFAQMVH-------KNYKLQDIVDLLKECERHDVVESIESHPGYEDVQ- --- >UniRef50_B0WSA4(410-476:481) Netrin receptor unc5 n=1 Tax=Culex quinquefasciatus RepID=B0WSA4_CULQU E=0.0001 s/c=0.71 id=20% cov=39% ------------------------------------------------------QILDLWECRNRDLNAVCSLIEICRNMGRHDAVTVLQEIQ------- --- >UniRef50_C3Z8Q7(18615-18690:25209) Putative uncharacterized protein n=3 Tax=Branchiostoma floridae RepID=C3Z8Q7_BRAFL E=9e-10 s/c=0.85 id=19% cov=73% ------------IDIYSKTLSDDWKTFCHALDCSDDFITKIEVECGHDDYLCCETAIKTWRDtvDCSYADKIDHFCNACHSCGFDDIA------------ ----- >UniRef50_UPI0000E45D2A(589-683:1149) PREDICTED: similar to ankyrin 2,3/unc44 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E45D2A E=1e-07 s/c=0.60 id=18% cov=86% ---------------IAETKWTDFMDIGTKLGFSRNKLENIKHKTLQNRKDANIQMLCMWKASQRSlPEATETLKGIWESVSLASTAENTERDEINDDID QCGG >UniRef50_Q5D902(21-110:127) SJCHGC07041 protein n=1 Tax=Schistosoma japonicum RepID=Q5D902_SCHJA E=3e-05 s/c=0.56 id=17% cov=64% ----------------------EWKNLAKFWGFTLDDIMAISYQDvgKNSYKQHTYRLLNIWlHGINDNQSPMNEFYLALTTIGRKRTAE---------- ------ >UniRef50_P25446(220-309:327) Tumor necrosis factor receptor superfamily member 6 n=8 Tax=Murinae RepID=TNR6_MOUSE E=3e-08 s/c=0.66 id=18% cov=86% --------LSKYIPRIAEDMTiQEAKKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKAECRRTLDKFQDMVQKD--- ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3721 0 0 A 2 794 * 3382 * * * * * * 2159 * * * * * 3272 * * * * 2 0 * * * * * * 4490 0 0 A 3 998 * 2814 * * 2806 * * * 3795 * 3706 * * * * * 3929 * * 3 0 * * * * * * 5086 0 0 P 4 * * * 4362 4138 * * * 3411 2630 * * 754 * * 4444 * * * * 4 76 * 4279 * * * * 5896 0 0 G 5 4444 4140 4758 2689 * 2245 5037 4716 3765 * * * * 2713 4555 3658 3682 * * * 5 0 * * * * 0 * 6443 0 1000 E 6 * * 1447 1165 * * * * * * 5199 * 5270 * 4277 4959 4309 * * * 6 35 * 5379 * * * * 6925 0 0 E 7 4258 * 2891 1131 * * 5023 4387 5555 5385 * * 3808 5276 5528 4435 4508 5420 * * 7 0 * * * * 0 * 7268 0 1000 D 8 4716 * 1373 3634 4839 * 5545 5468 3457 4707 * 4614 * 3742 5577 4545 3531 5551 * * 8 26 5786 * 1000 1000 * * 7386 1000 0 L 9 5896 * * 4898 5721 * * 3138 * 1094 4752 * 4682 * 3325 5663 4628 3762 5940 5466 9 25 5843 * 1000 1000 * * 7489 1000 0 C 10 4266 5030 4291 2356 * * 4793 * 3521 4317 5921 4271 * * 1842 3241 4483 * * * 10 91 * 4034 * * * * 7588 0 0 A 11 2816 5653 4042 3024 * 5876 5840 * 2710 4717 4153 3825 5579 3167 2874 5881 5902 * * * 11 27 * 5733 * * 1465 649 7504 0 2201 A 12 2842 2708 * * 3758 4992 4095 4216 4087 4236 5944 * * 5127 6024 4321 3510 3727 * 3261 12 0 * * * * * 0 7556 0 2199 F 13 * 6172 * * 698 * * 3073 * 3448 4182 * * * * * 5970 5224 6029 4440 13 0 * * * * * 0 7623 0 2199 N 14 3906 * 2072 2855 * 5190 5124 5917 4908 6001 6226 3447 3452 3962 6106 3545 5214 6235 * 4848 14 20 * 6164 * * 608 1540 7694 0 2199 V 15 4608 5323 3809 4821 3808 5846 4274 2717 4178 3068 3883 6426 6294 5955 5132 * 5119 3092 * 3694 15 37 5320 * 2586 263 0 * 7787 1679 1609 I 16 * * * * 3430 * * 1198 * 2848 5766 * * * * 6213 * 1807 * 6089 16 0 * * * * * * 8044 0 0 C 17 1382 4578 6340 4890 * 5042 * 5321 5405 5003 * * * * * 2164 4851 2756 * 6342 17 0 * * * * * * 8044 0 0 D 18 3535 * 2746 2925 * 6804 6116 6373 2730 6756 * 3810 * 4281 3043 3177 4965 6637 * 4614 18 0 * * * * * * 8098 0 0 N 19 4792 * 5084 2669 * 5743 3409 5475 2738 5065 * 2581 * 3900 3527 4249 4402 5433 * 5775 19 15 6574 * 0 * * * 8115 1000 0 V 20 4185 6525 * 6248 6280 * * 1940 6124 1455 3616 * 5523 * * * * 2598 * * 20 86 4105 * 252 2640 * * 8178 3326 0 G 21 3871 6414 6659 6733 6255 1002 * * 5060 * 5723 * 2902 * 4863 3361 4356 6504 6156 * 21 175 3357 5934 535 1691 * * 8207 4305 0 K 22 4220 * 3529 3519 5957 5510 4409 5052 3025 5904 6360 3125 4748 4843 4150 2847 3754 5125 * 5594 22 73 4349 * 870 1143 0 * 8340 3225 1280 D 23 * 6698 1723 2980 7093 5138 5008 * 3063 * 5760 2956 5127 4749 3738 4468 * 6711 * 4987 23 37 5312 * 426 1969 * * 8338 2199 0 W 24 * 5364 * * 3914 * 6470 5486 * 5196 6550 * * * * * * 5070 406 4228 24 0 * * * * * * 8364 0 0 R 25 4851 * 4757 3681 6884 * 7173 4921 1734 4861 4906 4917 5874 4166 2748 5197 3521 4172 6765 * 25 0 * * * * * * 8364 0 0 R 26 5829 * 3283 3502 * 4814 6583 4723 2768 4033 5436 4583 5298 3448 2581 4116 3877 6107 6579 * 26 14 6679 * 1585 585 * * 8431 1000 0 L 27 * 6651 * * 2360 * * 3765 * 901 * * * * * * * 2634 5930 6870 27 0 * * * * * * 8431 0 0 A 28 1028 4196 * * 5471 1744 * 6805 * 5978 4298 * * * * * * 4372 * 6656 28 15 6623 * 0 * * * 8431 1000 0 R 29 4426 6084 * 4066 * 4516 6825 3754 3935 3725 * 5928 * 3964 1366 5213 4489 5408 6716 4710 29 12 6899 * 0 * * * 8431 1000 0 Q 30 4078 4666 6691 3207 * 5552 3477 5731 2617 4521 4758 4622 * 3761 3048 3485 5381 5284 * 4806 30 52 5271 6739 0 * * * 8432 2167 0 L 31 6488 * * * 6628 * 6273 5644 * 211 4368 * * * * 5612 * * 6295 * 31 57 5133 6601 1942 435 0 * 8431 2305 1000 K 32 * * 3141 5885 * 776 4461 * 4193 * * 3805 5690 4918 4916 5725 6712 * * * 32 50 6741 5353 2585 263 * 0 8433 1000 1000 V 33 5610 4807 * * 2148 * 6323 3115 * 1393 3785 * * * * 6736 * 3179 * 5865 33 17 * 6390 * * 434 1945 8428 0 2669 S 34 6714 * 3531 3788 * 4439 6077 * 4384 6659 6507 4366 3610 5920 6821 1523 2335 * * * 34 0 * * * * 0 * 8407 0 1787 D 35 5638 * 2537 2536 6612 6847 4666 5710 3768 5894 * 3802 3509 4095 3886 4717 4526 4891 5933 4310 35 27 * 5747 * * * * 8432 0 0 T 36 3207 6775 2939 3799 * 3989 * 4495 5291 5758 * 2754 3468 3636 5250 3392 3841 * * 5749 36 32 6652 6394 2322 322 * 0 8380 1000 1283 K 37 4719 * 1848 1872 4479 * 6271 * 3878 6704 * 5201 * 3405 6036 5583 4893 4044 * 5404 37 13 6760 * 1000 1000 1194 829 8359 1000 1813 I 38 6557 6736 * * * * * 1057 * 2211 4182 * * 6555 6081 6913 5123 2592 * * 38 0 * * * * * 0 8380 0 1283 D 39 4639 * 1769 2210 * 5736 4896 6154 4465 5065 * 3903 * 4100 4818 4198 4278 6797 7123 5265 39 23 * 5975 * * * 0 8380 0 1283 S 40 3967 6949 4028 3405 4731 4720 4316 5962 3578 5221 7206 3661 6704 3933 3113 3078 4078 4160 6670 * 40 50 4881 * 781 1259 1688 536 8378 2577 2522 I 41 4245 4699 * * 4552 * 6454 809 6670 3230 5755 6973 * * * 6337 5703 3489 6624 6569 41 14 * 6681 * * 0 * 8380 0 1916 E 42 4614 * 3159 2775 * 6163 6961 5520 2686 3915 * 5980 * 3039 3072 3784 5273 4186 * 5268 42 33 7318 5906 1000 1000 0 * 8425 1000 1000 D 43 3770 6597 4214 3127 6421 5202 3707 4820 5252 3616 5166 3526 6628 3961 4319 3303 3906 4597 * 4609 43 26 6938 6736 1000 1000 0 * 8425 1000 1685 R 44 5271 5673 2418 3423 * 4843 * 5779 3063 4791 6597 2977 * 3369 3879 3354 4180 6605 * * 44 44 * 5059 * * * 0 8417 0 1000 Y 45 5369 4280 6069 3593 4723 * 2895 * 5309 7067 6569 2024 5532 6126 6840 4076 5155 5108 6601 2367 45 99 6548 4163 0 * 310 2370 8422 1000 3089 P 46 4020 * 4899 5113 5662 3935 4530 5223 3863 5704 * 5559 2291 4287 2588 3518 3620 5564 * * 46 133 5560 3900 956 1045 1277 768 8381 1742 3973 R 47 5183 5665 3008 4464 * 2623 3982 5714 4225 4463 6608 2520 6681 3965 4143 3707 6573 * * 4732 47 129 5240 4087 0 * 154 3305 8289 2268 4449 N 48 4842 5701 1715 * 6574 3757 4316 * 4639 * * 2422 4694 5747 4902 3989 3746 4584 * 6648 48 81 5110 5283 429 1960 0 * 8394 2222 3572 L 49 3930 5265 6612 4529 4894 5710 4671 4117 4752 2653 6755 5633 3788 5921 4083 3521 3453 3005 * 5114 49 60 6859 4950 0 * 546 1666 8415 1000 2286 T 50 4648 6003 3474 2793 4964 4274 6779 * 3604 4498 5883 4842 5242 3809 3866 3569 4336 4764 5861 3558 50 29 * 5661 * * 311 2366 8340 0 3344 E 51 4127 * 3076 1971 * 4813 5820 6451 4383 4325 4195 5823 6600 3157 4540 3729 5830 4830 5576 5651 51 19 6258 * 1000 1000 574 1607 8404 1000 2307 R 52 2454 3369 * * * 4404 5424 5124 3191 5326 5601 * 5260 1665 3552 6675 6726 6688 * 6516 52 42 * 5117 * * 0 * 8427 0 1000 V 53 2300 2527 * * 4833 5581 6825 2546 4693 5378 5151 5208 5182 * 7221 5003 3169 3576 * 6781 53 48 * 4924 * * 0 * 8400 0 2240 R 54 5157 * 5869 4405 3662 5564 4259 4371 7260 2835 5078 * 6590 5013 3127 4614 4869 4253 6591 2077 54 13 * 6763 * * 517 1731 8360 0 2316 E 55 3222 5813 3621 2504 * * 4502 6682 4115 4482 * 4337 * 2460 4063 3621 4236 5324 6537 * 55 0 * * * * 910 1096 8461 0 1614 S 56 3853 5045 * * * 5356 * 3753 * 2136 1375 * * * * 5917 4869 2858 * * 56 0 * * * * * 0 8472 0 1000 L 57 * * * * 3851 * * 4267 * 278 4831 * * * * * * 5715 * * 57 24 * 5925 * * * 0 8472 0 1000 R 58 6524 5520 4555 3063 6141 6587 4825 6977 2748 2929 5978 3862 * 3294 2558 * 4940 7012 5622 4633 58 14 * 6733 * * 536 1688 8475 0 2294 I 59 3978 6875 4358 3894 * * 4447 4120 2975 2802 4735 5256 * 3920 3666 3593 3588 4745 6638 5954 59 0 * * * * * 0 8456 0 1666 W 60 6402 5726 * * 6457 * 6848 6459 * * * * * 6841 * * * * 106 * 60 17 6402 * 1585 585 963 1038 8456 1000 1666 K 61 5407 6760 * 4454 5974 6385 5240 4169 2299 4076 4556 * * 2942 2671 4644 5393 3713 7026 3799 61 97 4596 5414 586 1583 * 0 8474 3081 1000 N 62 4465 5448 3307 2309 * 5373 * 4887 3777 6693 6078 3471 * 2503 3141 4901 6538 6605 6705 5083 62 50 4887 * 1296 755 1510 624 8426 2470 2383 T 63 * 7225 3469 5064 * 5209 * 6648 2018 5506 4922 5247 * 3573 1892 3622 3772 * * * 63 69 4736 6779 541 1677 873 1139 8437 2784 1738 E 64 4812 5053 4099 3005 4931 6557 3498 6089 3885 6083 5370 2557 5277 4222 4818 3662 4095 4881 * 4578 64 82 6050 4630 1000 1000 871 1141 8463 1280 1657 K 65 4276 6455 4841 6581 * 962 * * 4504 5688 * 5210 3910 6632 3465 3413 6651 5891 * * 65 107 4598 5060 1790 492 298 2422 8469 2838 3470 E 66 6058 6664 3551 3006 * 3799 4824 6896 3153 6921 4988 5268 3937 3930 3337 2992 4673 5041 6493 4817 66 68 4751 6773 687 1400 415 2000 8464 2579 2853 N 67 4866 6363 2553 3397 * 3631 4974 * 3195 5933 6630 3109 4066 4319 4270 3225 4741 7026 * 6571 67 53 6658 5274 0 * 927 1077 8472 1000 1710 A 68 1292 5347 3267 4725 4724 3454 5115 * 5131 5598 * 4759 4573 5712 6799 5275 5634 4423 * 5755 68 96 4442 5749 1154 861 380 2111 8394 3104 2722 T 69 3642 5971 4944 5051 6355 6903 * 6355 2984 4840 7174 4560 5459 5666 7113 2965 1317 6668 * 6803 69 30 6471 6745 1000 1000 0 * 8399 1000 2325 V 70 5235 7028 7011 6836 4569 6961 6862 2950 3674 1950 4100 * 6048 * 4255 6531 5048 2233 4956 6348 70 0 * * * * 0 * 8488 0 1000 A 71 4607 8022 3124 2007 7156 3342 5942 6913 3530 5145 * 3812 5755 3797 3918 3879 4592 6746 * * 71 15 6607 * 0 * * * 8491 1000 0 H 72 4272 * 3392 3440 * 5725 5386 5012 3209 4758 4923 3348 6702 3418 3290 4459 3359 4232 * 6764 72 0 * * * * * * 8491 0 0 L 73 * * * 6483 4910 * * 4817 * 319 4580 * * * * * * 4141 5630 * 73 0 * * * * * * 8491 0 0 V 74 3326 3844 5920 4250 5468 6629 6898 2512 3011 2686 4761 * * 6705 5745 5944 5946 3152 * 4169 74 0 * * * * * * 8491 0 0 G 75 4716 6051 3148 2588 * 3828 6613 6763 3254 5908 * 4829 6473 2945 4729 3677 3590 4264 * 5098 75 0 * * * * * * 8491 0 0 A 76 1124 6054 * 4590 * 3513 5900 3361 5958 5711 5060 6625 * * * 4765 3833 3610 * 5747 76 0 * * * * * * 8491 0 0 L 77 * 4280 * * 5917 * * * * 212 5783 * 6483 * * * * 5129 6533 * 77 0 * * * * * * 8491 0 0 R 78 6907 * 4098 3311 6695 4813 4461 5119 3001 4212 4981 5185 7082 3700 2145 5261 4425 4418 5785 5210 78 0 * * * * * * 8474 0 0 S 79 3265 * 2717 2578 * 5128 5637 5886 2631 5266 * 3261 * 5363 4117 3814 4637 6726 * 5925 79 0 * * * * * * 8474 0 0 C 80 3494 2524 * 5766 4439 5307 * 2303 * 3464 2884 * * 5570 * 3146 4391 4744 * * 80 13 * 6768 * * * * 8322 0 0 Q 81 * 6476 2781 3090 * 1410 5347 * 3306 * * 3453 * 5250 3607 5376 * * * * 81 11 6999 * 2000 415 0 * 8307 1000 1000 M 82 * 4147 * 5204 4153 * 4536 5921 5107 1983 3319 6521 * 5279 1842 * 5088 5027 * 4552 82 12 6881 * 2000 415 * * 8256 1000 0 N 83 4676 6200 4524 5127 5741 3471 3532 4499 2770 5840 5680 2881 6068 3657 3429 5323 5029 4023 * 6360 83 0 * * * * * * 8253 0 0 L 84 4138 * 1241 4805 * 5177 5101 * 3628 4401 * 4652 6480 4594 3887 4230 4947 4875 * 5667 84 0 * * * * * * 8191 0 0 V 85 3442 4592 6302 * * * * 2113 6164 1826 5694 * 5595 6563 * * 3776 2386 * 6407 85 21 7168 7098 3459 138 * * 8184 1000 0 A 86 813 * * * * 6612 * 4393 5533 4974 * * * 6710 5414 4332 * 2078 * * 86 19 6262 * 3170 170 * 0 8195 1000 1000 D 87 7604 * 1557 1533 * 5793 4324 5314 3918 * * 4002 * 6385 5797 5529 4792 * * * 87 50 4880 * 2008 412 * 0 8245 2257 1000 L 88 3820 * 3856 3964 * 6212 6552 2702 2471 3064 5100 4632 * 4040 4718 4441 5422 4217 * 5214 88 0 * * * * * 0 8034 0 1000 V 89 5558 * * * 6354 * * 1288 * 1849 5989 * * * * * 5931 2017 * * 89 16 6513 * 2000 415 * 0 8034 1000 1000 Q 90 4852 6060 3797 1534 6674 * 5079 * 2741 5368 * 3344 * 2942 4642 4790 6048 * * * 90 35 5387 * 0 * * 0 7907 1624 1000 E 91 3533 * 3593 2381 * 4846 * * 3010 5964 * 4499 6156 3954 3643 2593 3629 * * 6110 91 18 * 6301 * * 0 * 7699 0 1000 V 92 4047 6103 3460 4441 5139 3706 4857 2217 2251 3306 5973 4977 * * 5077 5956 5947 6310 * * 92 0 * * * * * 0 7554 0 1000 Q 93 5549 * * 2257 5279 * 5011 * 5843 3142 5242 4002 3168 2200 4699 3991 3991 * * * 93 33 * 5459 * * 0 * 7191 0 1000 Q 94 * * 5125 5300 * 3306 5332 2958 4224 3576 * 3628 5813 2856 3030 3144 5261 4170 * * 94 0 * * * * * 0 7016 0 1000 A 95 1474 * * 4048 * * * * 3127 5318 5182 4751 * 5051 * 2607 2758 * * 4914 95 0 * * * * * 0 6907 0 1000 R 96 4621 * 3314 2592 * * * * 4020 * 5031 4941 * 2866 1882 * 2647 * * * 96 48 4923 * 2322 322 * 0 6778 1000 1000 D 97 3179 * 2241 3790 * 2352 4860 4492 4857 * * 3879 5110 * 3217 3999 * 5079 * * 97 0 * * * * 0 * 6643 0 1000 L 98 * 4661 * 4435 4672 * * 2515 * 1204 * * * * * 4078 3538 3051 * * 98 0 * * * * * * 6218 0 0 Q 99 4369 * 4115 2639 * * 4300 * 3609 * * 4562 * 2058 3001 2730 4556 * * * 99 0 * * * * * * 6149 0 0 N 100 4291 * 4261 4435 * 4207 4012 * * 4300 * 1824 * 3888 3264 2124 * * * * 100 0 * * * * * * 5929 0 0 R 101 * 3810 4405 4111 * 1643 * 3930 * 4210 * * 4142 2117 3370 * * * * * 101 0 * * * * * * 5754 0 0 S 102 2056 * * 2684 * 3375 * * * * 3811 2821 * * * 2235 3603 * * * 102 0 * * * * * * 5146 0 0 G 103 * * * * * 0 * * * * * * * * * * * * * * 103 0 * * 0 * * * 4427 0 0 //