HHsearch 1.5 NAME d2fy9a1 FAM FILE d2fy9a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2fy9a1.a3m DATE Mon Mar 8 18:19:24 2010 LENG 54 match states, 54 columns in multiple alignment FILT 44 out of 48 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4520 2.1563 SEQ >ss_dssp CCSSCCCCCCCSSSCCCCCHHHHHHTTCSSSCCCEEEEETTEEEEECSSSCCCC >sa_dssp EEEEDDEDEEDEEDEDECAECBDEECDBDEEDDDDECEDEEDEDCCBEEDEDEE >ss_pred CCCEEEEEEECCCCCEEECHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCC >ss_conf 963023786411695982188986529899976899995994999970488889 >Consensus MKxtGiVRxiDxLGRiViPkElRkxlxixxxdxlEifvxxdxIiLkKYxpxxxc >d2fy9a1 MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVC >UniRef50_UPI0001C3571A(1-50:98) AbrB family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3571A E=4e-09 s/c=1.25 id=33% cov=94% MNSTGIIRRIDDLGRVVVPRDMRKSFGLQEGTPLEVCATEEGILFKKYDP---- >UniRef50_C9S1A7(1-48:82) Transcriptional regulator, AbrB family n=3 Tax=root RepID=C9S1A7_GEOSY E=2e-07 s/c=1.19 id=39% cov=91% MKPLGIVRRIDHLGRITIPMEIRRVHGWNTGTPIEMFATDKGLLLREY------ >UniRef50_A8F9W2(12-60:100) Transcription regulator n=2 Tax=Bacillus pumilus RepID=A8F9W2_BACP2 E=5e-06 s/c=1.06 id=34% cov=93% -----YVRYIDNVGRVVLPTDIRKRLKIHPRDFMEIYREEDQIVIKPYWQDKPC >UniRef50_C3EDV7(1-47:83) Transition state regulatory protein n=1 Tax=Bacillus thuringiensis serovar pakistani str. T13001 RepID=C3EDV7_BACTU E=1e-05 s/c=1.08 id=38% cov=89% -----MVRRMDELGRVVLPKEMRRSLDLVTNTQVEMFVRDGNVHMRKQERTC-- >UniRef50_B0G6C5(5-46:172) Putative uncharacterized protein n=2 Tax=Lachnospiraceae RepID=B0G6C5_9FIRM E=0.001 s/c=1.07 id=33% cov=80% -----LIRTMDSQGRIVIPAEIRKQMKLSDGDALELENVGMELLLRK------- >UniRef50_A8RA51(41-89:204) Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RA51_9FIRM E=4e-13 s/c=1.54 id=44% cov=93% MKATGIVRRLDDLGRLVIPKEIRKQYRLKEGDSIEFFTENDRILIQKFD----- >UniRef50_A8FHH2(1-54:96) Transcriptional regulator n=3 Tax=Bacillus RepID=A8FHH2_BACP2 E=1e-11 s/c=1.31 id=42% cov=102% MKRTGMVRHIDSLGRIVLPSEMRKVLNIKEEQLLEIFIEDQTIMLKRYDADKSC >UniRef50_C9RBL0(1-54:83) Transcriptional regulator, AbrB family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBL0_AMMDK E=9e-10 s/c=1.20 id=40% cov=98% MKVFVSMREIDELGRVTLPAELRRSLGWGPGTPLELFIDEakGEIVLRLYEPGC-- >UniRef50_C4G0V6(1-47:86) Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0V6_ABIDE E=6e-07 s/c=1.17 id=38% cov=89% MKNIVLTRRLDKLGRITIPANLRKSLNINDSEELEIITGANNIIIRK------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2719 0 0 K 2 * * * * * * * * 204 4630 * 4647 * 5311 5242 * * * * * 2 0 * * * * * * 2778 0 0 S 3 1871 * * * * * * * * * * 3712 3547 * 4587 1295 5208 3497 * * 3 0 * * * * * * 2778 0 0 I 4 4661 * * * 4420 * * 3432 * 4570 * * * * 4797 3890 682 4258 * * 4 0 * * * * * * 2811 0 0 G 5 * * * * * 144 * * * * * * * * * * * 3398 * * 5 0 * * * * * * 2811 0 0 V 6 * * * * * * * 973 * 3614 2992 * * * * 4592 * 2579 * 3747 6 0 * * * * * * 3051 0 0 V 7 * * * * * * * 2541 5476 * 4592 * * * * * 3858 524 * * 7 0 * * * * * * 3051 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 3051 0 0 K 9 * * * 4592 * 4660 3784 * 1540 * * 4338 * * 1414 * 4658 * * 4713 9 0 * * * * * * 3051 0 0 V 10 5217 * * * * * * 1279 * 2203 3670 * * * * * * 1914 * * 10 0 * * * * * * 3051 0 0 D 11 * * 0 * * * * * * * * * * * * * * * * * 11 0 * * * * * * 3051 0 0 E 12 4338 * 2259 1941 * 4581 3798 * 4572 * * 4311 4539 3817 * 2633 * * * * 12 0 * * * * * * 3051 0 0 L 13 * * * * * * * * * 159 5217 * * 4658 * * * 4713 * * 13 0 * * * * * * 3051 0 0 G 14 * * * * * 73 * * * * * 4338 * * * * * * * * 14 0 * * * * * * 3051 0 0 R 15 * * * * * * * * * * * * * * 33 * * * 5476 * 15 0 * * * * * * 3051 0 0 I 16 * * * * * * * 964 * 3655 * * * * * * * 1293 * * 16 0 * * * * * * 3051 0 0 V 17 * * * * * * * 4338 * * * * * * * * 2611 346 * * 17 0 * * * * * * 3051 0 0 M 18 * * * * * * * 961 * 1268 5598 * * * * * * 4308 * * 18 0 * * * * * * 3051 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 0 * * * * * * 3051 0 0 I 20 3022 * * * * * * 3286 923 * 2987 * * * 4334 4909 4713 * * * 20 0 * * * * * * 3051 0 0 E 21 * * 3818 387 * * * * * * * 4572 * * 4782 3542 * * * * 21 0 * * * * * * 3051 0 0 L 22 * * * * * * * 1480 * 1076 2976 * * * * * 4647 * * * 22 0 * * * * * * 3051 0 0 R 23 * * * * * * * * * * * * * * 0 * * * * * 23 0 * * * * * * 3051 0 0 R 24 * * 3606 * * * * * 887 * * * * * 1666 * 4011 * * * 24 0 * * * * * * 3051 0 0 A 25 5598 * 4782 * * * * 5570 * 4468 * 5043 * 4021 3745 1852 1709 2973 * * 25 0 * * * * * * 3051 0 0 L 26 * * * * 4219 * 4813 * * 587 2978 * * 4698 * * * * * 3653 26 0 * * * * * * 3051 0 0 D 27 4782 * 2438 4430 * 1859 3988 * 2742 * * 3513 * 4779 3360 5436 * * * * 27 0 * * * * * * 3051 0 0 I 28 * * * * * * * 650 * 2121 4779 * * * * * * 5687 3698 * 28 0 * * * * * * 3051 0 0 A 29 4127 * 3179 * * 3308 4165 * 2617 4326 * 2695 5817 3641 3698 4641 * 3897 * 5255 29 0 * * * * * * 3045 0 0 I 30 * * 3135 1095 * 5574 * 4177 * * * 4790 2929 4768 5891 * 3373 5365 * * 30 0 * * * * * * 3045 0 0 K 31 4790 * 3664 4892 * 1234 4326 * 2179 * * 4668 * * 4062 4151 * * * * 31 0 * * * * * * 3045 0 0 D 32 5572 * 876 3394 * * * * * * 5657 * * 4892 * 3573 2312 * * * 32 0 * * * * * * 3045 0 0 S 33 3231 * * 4542 4698 5365 5574 * 4567 4892 * * 1242 4668 * 2127 * * * * 33 31 5574 * 2322 322 * * 3045 1000 0 I 34 * * * * * * * 2590 * 637 3950 * * * * * * 2987 * * 34 0 * * * * * * 3045 0 0 E 35 * * * 0 * * * * * * * * * * * * * * * * 35 0 * * * * * * 3045 0 0 F 36 4326 * * * 3946 * * 620 * 3591 3278 * * * * * * 4368 * * 36 0 * * * * * * 3045 0 0 F 37 * 4909 * 4641 894 * * 3855 * 4761 * 5018 * * * * 5365 * * 2137 37 0 * * * * * * 3045 0 0 V 38 3852 * * 5413 * * * 2696 5255 * * 4641 * * 4698 * 2313 1162 * * 38 0 * * * * * * 3045 0 0 D 39 6255 * 1607 1687 * 4542 * * * * 5018 5545 * 4031 4668 * 3538 3916 * * 39 16 6544 * 0 * * * 3045 1000 0 G 40 4542 * 2188 1908 * 1666 * * 4303 * * 4862 * 6257 4822 * * * * 5474 40 63 4542 * 1000 1000 * * 3045 1000 0 D 41 6193 * 1106 2650 * 3427 * * 3745 * 4641 3855 * 4892 5018 5574 * * * * 41 185 3055 * 0 * * * 3045 1492 0 K 42 4111 4573 5574 2321 * 2959 4761 * 2916 * * 3603 * 3467 3468 3824 4400 * * * 42 19 6228 * 0 * * * 3045 1000 0 I 43 * * * * * * * 475 * 3717 * * * * * * * 2289 * * 43 0 * * * * * * 3045 0 0 I 44 * * * * * * 4668 985 * 2925 3954 * * * * * * 1947 * * 44 0 * * * * * * 3045 0 0 L 45 * * * * 4318 * * 2998 * 432 4668 * * * * * * 4496 * * 45 0 * * * * * * 3045 0 0 K 46 * * * 4761 * * * * 1029 * * * * 4168 1515 4768 5018 * * * 46 0 * * * * * * 3045 0 0 K 47 * * * 4797 * * * * 356 4542 * * 3850 * 3825 * * * * * 47 0 * * * * * * 3045 0 0 Y 48 * * * * 3848 * 4289 * * * * * * 4478 * * * * * 261 48 0 * * * * * * 2892 0 0 K 49 3407 * 3229 2108 * * * * 4120 5432 * 5166 * 3564 3443 2206 * 6100 4297 * 49 0 * * * * * * 2892 0 0 P 50 3962 * 5038 * * * * * * * * * 481 4253 4344 4082 5138 * * * 50 0 * * * * * * 2872 0 0 H 51 2874 * 2822 4773 * 2409 4909 3007 4228 * 5038 4640 4501 * 4139 * 3549 * * 5092 51 0 * * * * * * 2793 0 0 G 52 * 1164 * * * 1776 * * 3106 * 4627 4053 * * 4472 * * * * * 52 0 * * * * * * 2858 0 0 V 53 2997 * * * * * * * * * * * 3373 * * 2144 2249 1549 * * 53 0 * * * * * * 2705 0 0 C 54 * 0 * * * * * * * * * * * * * * * * * * 54 0 * * 0 * * * 2339 0 0 //