HHsearch 1.5 NAME d2fx0a1 FAM FILE d2fx0a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2fx0a1.a3m DATE Tue Mar 9 12:27:07 2010 LENG 73 match states, 73 columns in multiple alignment FILT 107 out of 8874 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.5 EVD 0.4085 -0.0883 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHTSHHHHHHHHHHHHCSGGGCCCHHHHTC >sa_dssp EDEECCDEABEBADDCBEDDCCEDBCBECAAEDCECEDEDADECBECCDDACDCBEEDDDEEEEDDEEEEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9689999999999999997292407599999995899888403389999999999999999999999864159 >Consensus srxxtxxxIlxaaxxlxxxxGxxxxtxxxIaxxagvsxxxxYxxFxxKxxLxxxxxxxxxxxxxlxxxlexnx >d2fx0a1 SREQTXENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAXASYYFNGKENLYYEVFKKYGLANELPNFLEKNQ >UniRef50_B8H0Y2(18-88:213) Transcriptional regulator, TetR family n=2 Tax=Caulobacter vibrioides RepID=B8H0Y2_CAUCN E=0.0002 s/c=0.66 id=17% cov=99% -RPHTEARLRAATEALLVEGGFSALTPSAIGRRAGVDKMLIYRYFGDLPGLIRAIAFAPDFFPTFEDHCEGD- >UniRef50_C8PP11(10-83:200) Transcriptional regulator, TetR family n=3 Tax=Bacteria RepID=C8PP11_9SPIO E=0.0003 s/c=0.63 id=18% cov=100% -RKDLKNLLIEKGIEIVNTEGLQSFSLRKAAAACKVSHAAPYSHFHSKEELLNAMQLHITerFSKALETAISENK >UniRef50_D2Q502(9-77:208) Transcriptional regulator, TetR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q502_9ACTO E=4e-09 s/c=0.91 id=18% cov=82% ------QQIVAAGRRCVSAHGFHKTTMADVIRESELSAGAVYGYFKSKDEIVAAIADEaLGTVDEL-------- >UniRef50_Q2Y845(3-60:206) Putative transcriptional regulator, TetR family n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y845_NITMU E=3e-05 s/c=0.86 id=17% cov=81% ----TADQIVNTAVELGEQKSWEAVRLHDVAAALGITLNDVHAHFREKEDIVEAWFERADSA----------- >UniRef50_Q28SB6(25-83:231) Transcriptional regulator, TetR family n=1 Tax=Jannaschia sp. CCS1 RepID=Q28SB6_JANSC E=8e-05 s/c=0.82 id=18% cov=77% ----TREDWVNTARDVLVNSGVAQVKIATLAGRLDVSRSSFYWYFQNRDELLSALLQDW-------------- >UniRef50_C0D3D0(5-70:189) Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3D0_9CLOT E=0.0001 s/c=0.72 id=18% cov=92% ----TKREILRAFSELASEKPVDKITVKEITDNCQISRNTFYYHYQDVYEVLEEYLR--LESQRMVERLEKD- >UniRef50_C9Y3S7(21-94:199) Putative uncharacterized protein n=2 Tax=Cronobacter RepID=C9Y3S7_CROTZ E=6e-09 s/c=0.84 id=18% cov=100% SPEALRQTLLECAVQVIAEQGLTGLTQEKVIRRAGISKGGLQHHFPTRQALVDGVMQHlqHMLLEEIQTLMAQD- >UniRef50_C9QF95(7-79:208) Transcriptional regulator TetR family associated with agmatine catabolism n=2 Tax=Vibrio RepID=C9QF95_VIBOR E=0.0001 s/c=0.65 id=18% cov=77% --KEKLKKIHNAVAQLMERREATDISMYDVAKECGMATSTVYHHYPNIENLFHSLLD---------------- >UniRef50_UPI0001969457(6-63:199) hypothetical protein BACCELL_04275 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969457 E=0.0003 s/c=0.80 id=19% cov=81% ------AEIYKNAFRLFLQDNYEKVTVVKLEKAIGLSCRGIYHHTKDKLGLFKAVVDTYIFEPH--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1374 * * * * * * * * * * * * * * 1163 2577 * * * 1 0 * * * * * * 5412 0 0 R 2 5503 * * * * * 5352 * 1791 * * * 5705 2652 1115 * 5353 * * * 2 0 * * * * * * 6999 0 0 E 3 3423 * 4526 1529 * 6094 6590 * 3130 6237 * 5065 3952 3132 3801 4191 5090 * * * 3 22 6067 * 1000 1000 * * 7324 1000 0 Q 4 3558 * 3142 1921 6071 * 4374 5516 4268 4819 * 4770 * 2656 3439 4111 5645 * * * 4 20 6179 * 1585 585 * * 7408 1000 0 T 5 5518 * 6177 * * * * 4675 3698 4069 * 4498 * 4657 2407 4794 1094 6423 * * 5 13 6750 * 1000 1000 * * 7481 1000 0 X 6 4617 * 5188 3575 6335 * 6314 5218 2131 4537 6367 6190 * 4621 1466 6760 6558 4242 * 5405 6 17 * 6424 * * * * 7479 0 0 E 7 2703 * 2880 1930 * 6479 * * 4833 * 6227 3839 * 2832 3048 5184 5065 * * * 7 0 * * * * 0 * 7591 0 1000 N 8 3172 * 6643 3330 * * 5676 * 3131 3321 * 5035 * 2902 1978 4105 4371 5546 * * 8 0 * * * * * * 7609 0 0 I 9 5574 * * * 4669 * * 966 * 2075 4462 * * * * * * 2784 * * 9 0 * * * * * * 7609 0 0 L 10 4959 5680 * 6816 4823 * 6422 2407 5033 1215 4734 * * 5853 4656 * 6814 3136 * 5287 10 0 * * * * * * 7622 0 0 K 11 3372 6472 2208 2170 * 6729 6137 * 3632 4852 * 4065 * 3490 3857 4380 4354 * * * 11 0 * * * * * * 7622 0 0 A 12 1034 5218 * 4676 * 4891 6189 4214 4646 5810 5866 6171 * 5167 5476 3829 3881 3898 * * 12 0 * * * * * * 7622 0 0 A 13 1197 6384 * * 4444 3446 * 5018 * 5053 5079 * * * * 3807 2409 3972 * * 13 0 * * * * * * 7622 0 0 K 14 3822 * * 3715 4050 5875 * 2899 4427 2503 3736 5689 * 5193 3284 5519 4720 4126 5344 4247 14 0 * * * * * * 7622 0 0 K 15 3545 * 2943 2159 * 5729 4655 5237 3540 5214 6380 5014 * 3866 2925 4933 3740 6430 * * 15 0 * * * * * * 7622 0 0 K 16 3980 4232 * 4131 * * 5603 3027 6680 1397 3968 * * 5575 5813 6525 6026 2882 6618 5737 16 0 * * * * * * 7622 0 0 F 17 4215 6652 * * 1825 * 6363 2351 * 1862 5076 * * * * * * 3337 * 4573 17 0 * * * * * * 7624 0 0 G 18 2455 5353 4029 3868 4409 4410 6221 5310 6434 3615 4987 4271 * 5601 3910 3680 4289 4496 3963 5086 18 20 6190 * 0 * * * 7624 1000 0 E 19 3468 * 3410 2020 * 4768 * * 3600 5558 * 5613 * 3708 2646 3470 3615 * * * 19 0 * * * * * * 7627 0 0 R 20 6635 * 3333 3102 4831 4251 3141 5907 2336 4680 * 4129 6698 3609 3797 4585 5354 5937 * 5932 20 0 * * * * * * 7627 0 0 G 21 * * 4664 5638 * 357 6653 * * * 6916 5402 5514 * 5715 4103 5737 * * * 21 0 * * * * * * 7627 0 0 Y 22 5801 * * 5959 2156 6389 * 2812 * 2640 6156 * 3863 * * * 5698 4901 5070 1934 22 0 * * * * * * 7627 0 0 E 23 3152 * 3017 2899 * 6463 4638 * 3365 5649 6538 4530 5069 3345 3219 3116 4755 6837 * 6543 23 0 * * * * * * 7627 0 0 G 24 1946 6360 3938 3314 * 2394 * * 3438 * * 3553 * 4303 4130 4140 5764 6389 * * 24 0 * * * * * * 7627 0 0 T 25 3266 5393 * * 3840 * * 3059 * 2543 4859 * 6664 * * 5643 2826 1758 6653 * 25 0 * * * * * * 7627 0 0 S 26 5851 * * * * 4142 6680 * 6360 * * 5624 6301 5529 3863 1438 1280 * * * 26 0 * * * * * * 7627 0 0 I 27 4942 * * * 4149 * 6414 2343 * 2548 2735 * 5726 6874 * * 3749 2067 * 4616 27 0 * * * * * * 7627 0 0 Q 28 3309 * 3415 3655 * 4320 6156 * 4473 * 6874 3982 * 3680 1849 3032 4501 6180 * 6754 28 0 * * * * * * 7627 0 0 E 29 2949 * 2446 2863 * 5790 6875 * 3589 6894 5860 3474 6463 2944 4135 4156 4660 5042 * * 29 0 * * * * * * 7627 0 0 I 30 5496 * * * 6360 * * 949 * 2064 * * * * * * * 2261 * * 30 0 * * * * * * 7627 0 0 A 31 993 3545 6771 6180 * 3951 * 5320 * 4676 5456 * * 6528 * 4285 3596 3436 * * 31 0 * * * * * * 7627 0 0 K 32 3070 * 3105 2644 * 6389 6425 * 2309 6445 * 5705 * 3823 2710 4244 4066 6301 * * 32 0 * * * * * * 7627 0 0 E 33 2093 * 4826 2482 6758 6830 4972 * 4417 4314 * 6528 * 3339 2236 4994 5674 5653 * 6439 33 0 * * * * * * 7627 0 0 A 34 1064 5729 * * 6600 6745 * 3827 * 2909 4259 * * * * 4085 3417 3738 * * 34 0 * * * * * * 7627 0 0 K 35 5796 * 4006 3902 * 688 6588 * 4632 6581 6653 3850 * 4573 5531 5959 * 6360 * * 35 0 * * * * * * 7627 0 0 V 36 6603 5140 * * 5004 * * 2096 5361 2631 4846 * * 6301 6846 6463 4577 1498 * 4412 36 18 6301 * 0 * * * 7627 1000 0 N 37 3337 * 4349 * * 3658 * 6877 5812 * * 3956 3826 5711 6628 1261 2677 6827 * * 37 0 * * * * * * 7627 0 0 V 38 4706 6180 6826 4268 * 6830 4644 6019 1790 4728 6486 6628 3231 4510 2304 4790 5163 4383 6664 * 38 0 * * * * * * 7627 0 0 A 39 2582 * * * * 1452 * * * 6375 5730 * 3705 4180 3146 2865 4876 5610 * * 39 0 * * * * * * 7627 0 0 X 40 2657 * * * 6696 3184 6985 * 6226 3614 5858 4389 6840 6750 5938 2408 1848 4538 * 6596 40 0 * * * * * * 7624 0 0 A 41 4482 * * * 2071 * * 2455 * 1714 5588 * 5433 * * * 6414 2520 * * 41 0 * * * * * * 7627 0 0 S 42 * * * * 3270 * 3901 6913 * 4153 * * * 5063 5456 5737 6414 6445 * 577 42 0 * * * * * * 7627 0 0 Y 43 4200 * 5633 5013 5718 6722 2390 * 3201 4102 * 3500 * 5218 2355 4442 6228 6736 7254 3033 43 0 * * * * * * 7627 0 0 Y 44 5054 6228 * 4347 4508 * 1549 4904 6538 5377 * 5876 * 5757 4682 5716 6578 * * 1516 44 0 * * * * * * 7627 0 0 F 45 5653 * * * 585 * * 6638 * * * * * * * * 5343 3948 5049 2445 45 0 * * * * * * 7627 0 0 N 46 3829 * 4300 4587 * 2209 4885 * 2637 * * 5756 2390 4021 4203 3872 5718 6156 * * 46 13 6758 * 0 * * * 7627 1000 0 G 47 * 5711 2544 * * 3391 6230 * 6031 * * 1791 * * * 1698 3501 * * * 47 0 * * * * * * 7627 0 0 K 48 * * 5382 6538 * * * 5162 634 4792 4836 * 6425 6230 2747 * 5869 5020 * * 48 13 6846 * 2000 415 * * 7627 1000 0 E 49 3927 * 2066 1829 6425 5780 4759 * 6444 5306 6543 4477 5760 4130 5715 3764 4652 6736 * 4741 49 0 * * * * * * 7627 0 0 N 50 2384 * 2212 1847 * 2854 5511 * 6635 * 6967 5619 * 5018 5806 5033 4771 * * * 50 27 6653 6906 2000 415 * * 7627 1000 0 L 51 5468 6223 * * 5396 * * 2509 * 680 3960 * * * * * * 3875 * 7002 51 34 6058 6881 2396 304 0 * 7622 1784 1000 Y 52 5705 6644 * * 2417 5141 * 2537 4993 1638 5108 * * * 6497 * 6436 3045 6662 4395 52 33 6762 6226 2000 415 * 0 7626 1000 1000 Y 53 2709 6583 3752 3114 5514 6942 6527 4515 5421 2897 5170 3879 * 5267 3726 5156 4122 3892 * 4195 53 13 6831 * 2322 322 * 0 7607 1000 1660 E 54 1372 * 3684 2673 * 4611 4981 5241 6655 5710 5099 * * 4352 5197 4317 4382 5881 * 5030 54 29 5663 * 2000 415 0 * 7607 1768 1660 V 55 2707 4583 * * 5293 6444 * 2623 * 2208 5198 * * * * 5783 3981 1974 6785 5876 55 39 6635 5896 1585 585 * * 7627 1000 0 F 56 3759 5808 * 5638 3958 5884 6773 2975 * 1740 3421 * * 6412 * 5789 4894 2818 6909 3962 56 72 4784 6315 1350 718 937 1066 7619 2800 1729 K 57 3390 * 2491 2333 6592 5103 6281 5177 4742 4667 5616 4702 * 3772 2846 4405 4562 6508 * * 57 199 3600 4422 895 1113 1043 958 7591 3851 1664 K 58 5597 * 4121 2785 5041 6909 3582 6689 5724 4928 5218 6369 * 3385 2111 4707 5178 5489 4670 3329 58 189 3680 4487 935 1068 2485 284 7573 4184 3454 Y 59 4634 * * 5505 3440 4270 4806 3155 5650 2817 6167 6770 6471 4779 3032 6585 * 4040 4357 2549 59 129 4005 5422 1000 1000 675 1421 7568 3531 4118 G 60 2506 6695 3621 4781 5427 3814 6448 3718 4904 2526 5596 6919 6798 6528 5696 3627 3658 4266 * 5174 60 164 3390 6358 1079 925 625 1508 7641 4308 3287 L 61 3278 * 4264 4148 3327 5465 6264 5013 3758 2498 3627 6863 5685 3502 4548 4415 5123 4758 * 5742 61 16 6470 * 1000 1000 555 1646 7639 1000 2415 A 62 2265 6580 5642 3307 4811 6426 6897 3742 5619 3166 * 6673 5114 3229 3421 5430 6632 3674 5142 5672 62 56 4727 * 798 1235 * 0 7654 2699 1000 N 63 3513 * 3142 3679 4385 6511 5171 5163 3985 4275 * 3509 4920 3690 3114 3861 3820 5168 * 6580 63 57 5044 6912 1391 692 * 0 7654 2380 1000 E 64 2702 * 4011 1859 6828 * 5132 * 5479 4638 5618 5491 5249 3184 3543 5619 4028 5581 4889 7009 64 42 6818 5665 1000 1000 0 * 7653 1000 1732 L 65 5341 6543 * 4667 3463 * * 3103 * 1365 4325 * 5308 4880 4549 6318 6515 2926 6496 6392 65 27 * 5760 * * 957 1044 7650 0 1819 P 66 4535 6689 3211 2971 5534 6644 6763 4072 3526 3816 6497 5069 2805 4603 3848 4460 3747 5217 * 6343 66 17 6431 * 0 * 564 1628 7595 1000 2303 N 67 4456 * 2079 2645 6300 4153 5441 6691 4155 5439 * 3669 6654 3133 4893 4563 3557 6186 * * 67 20 6158 * 0 * 0 * 7575 1000 1000 F 68 2393 6422 5399 5260 3266 * 3446 3459 5015 3674 5074 6170 5630 4288 3261 5542 4351 6251 5462 5230 68 0 * * * * * * 7583 0 0 L 69 5282 5415 6471 * 4120 6513 * 2014 6314 1164 5261 * * * * 5269 4409 3931 * * 69 0 * * * * * * 7572 0 0 E 70 4164 * 2204 1359 5944 6391 6563 * 5416 * * 5251 4029 4813 3806 3860 6429 * * * 70 0 * * * * * * 7514 0 0 K 71 4508 * 6271 1671 * 2875 * * 2586 5040 5994 * 5817 2817 3235 * * 6128 * * 71 0 * * * * * * 7403 0 0 N 72 * * 1829 3967 * 5362 * * * * * 1216 5664 4518 * 3397 5625 * * 5557 72 0 * * * * * * 6939 0 0 Q 73 * * * 2903 * * * * 2857 * * * * 1360 1562 * * * * * 73 0 * * 0 * * * 6439 0 0 //