HHsearch 1.5 NAME d2fug33 FAM FILE d2fug33 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2fug33.a3m DATE Mon Mar 8 18:35:03 2010 LENG 77 match states, 77 columns in multiple alignment FILT 103 out of 571 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4123 -0.1510 SEQ >ss_dssp CEEEECSSCEEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEECCCBCSSCEETTTCBCCTTCEEEC >sa_dssp EBDBDACEDECDBDEEBCABEBADEBECEBDDECBEEEEEEDCEDEDBCBDBBEEEDDEEECBABDCEBDEDBCADD >ss_pred CCEEEECCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCEECCCCCEEEC >ss_conf 92899999999968988778999973996250115788887641104999992668988440000117359989979 >Consensus MvxitidGxxxxxxxgxtilxaxxxxgixipxxcxxxxxxxxGxCxxCxVxVxgxxxxxxxvxACxtxvxxgmxIxT >d2fug33 MVRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLIQWQPKLAASCVTAVADGMVVDT >UniRef50_B8GGF2(7-82:272) Ferredoxin n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GGF2_METPE E=3e-16 s/c=1.13 id=27% cov=100% LVTVTINGVDCRAEEGEILLSVATREGIAIPHLCYEEALDPYGACRLCMVEVEK-RGKREMTTACTLRALDGLTVVT >UniRef50_B8KS50(15-93:107) Putative sarcosine oxidase alpha subunit n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KS50_9GAMM E=1e-07 s/c=0.73 id=25% cov=99% -IRITIDGVDFETYEGETIASALLIAGnlhcYTTPTGRPRTMFCNMGTCFECRVVVGQGEDQ-RWVLACNTPVEPDMCIAT >UniRef50_C6P4K6(1-82:333) Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P4K6_9PROT E=0.0003 s/c=0.56 id=19% cov=91% MSSITYGGQSFQCKAQESVLDCMTAHGVIIPSSCH------AGLCQTCLMQAVKGKVPASAQAglkstlvaqnfflACACHPEEDIEI-- >UniRef50_B1KJV3(16-92:947) NADH-quinone oxidoreductase, chain G n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KJV3_SHEWM E=5e-18 s/c=1.20 id=24% cov=99% LISLTIDNQSYSVEKRQNLLQACLSLGLDLPYFCWHPAMGSVGSCRQCAVTqyQNSEDTRGRLVMSCMTPLTEGMII-- >UniRef50_D1N815(3-74:675) Ferredoxin n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N815_9BACT E=7e-10 s/c=0.90 id=23% cov=95% -IEFILDGRNVTAEPGQTILEVARANGIKIPTLCREQRISKTTSCFVCVVR---DKKTGRFMPSCAAMPAPGQEIE- >UniRef50_D1UCG2(39-113:137) Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UCG2_9BURK E=8e-07 s/c=0.73 id=28% cov=94% --RFYIDGDEASALQGDTLLTAVLMQQRRVrnSEFSGAPRagFCLIGACQDCWMRTEDGQ----RIRACSTLVTEGMRVLT >UniRef50_A7UU58(22-105:1149) AGAP006220-PA n=1 Tax=Anopheles gambiae RepID=A7UU58_ANOGA E=1e-06 s/c=0.64 id=22% cov=100% -VTFTINGKPYTVDAGKISVDTSLNTFIRnHAQLTGTKFMCLEGGCGACVVNVNGLHPVTKekkswAVNSCLFPVYAchGLDVLT >UniRef50_B8GJX3(25-86:490) Succinate dehydrogenase and fumarate reductase iron-sulfur protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GJX3_METPE E=2e-05 s/c=0.81 id=22% cov=82% ---------TIEVNEGARVLHLLHAIHDQIDPTLSYRYCCSSGQCGSCAVRVDG-----KPVLACTAEARDGITIE- >UniRef50_D2RSS7(1-94:123) Ferredoxin n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RSS7_9EURY E=0.0003 s/c=0.49 id=25% cov=99% MPTIEFRGREIECERGRILRDVLLEAGesPHNGRANWL-NCRGHGTCGTCAVAIEGDASEPtaaerrrlslpphdpdgGLRLSCQTRVDGDLEVR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 2199 354 * * * * * * * * * 1 0 * * * * * * 6097 0 0 V 2 4883 * * * * 6354 * 1758 4834 6132 5084 * 3245 * * 5804 5480 1205 * * 2 0 * * * * * * 6942 0 0 R 3 5411 * * 3272 6486 * 4645 5572 3780 6506 * 2880 6574 5492 2727 3236 1830 6650 * * 3 0 * * * * * * 6857 0 0 V 4 * * * * 2845 * * 1260 * 2701 5080 * * * * * * 1944 * * 4 0 * * * * * * 6879 0 0 K 5 6590 * * 4670 4316 * 5014 3674 3886 6004 5755 6792 * 4600 5411 4371 1222 3828 6670 4107 5 0 * * * * * * 6879 0 0 V 6 * * * * 3935 * * 1378 * 2626 * * 5126 * 5697 * * 1748 6369 5060 6 36 5341 * 763 1284 * * 6926 1995 0 N 7 * * 1302 3626 6523 5214 * 6242 6067 * * 1328 * 6299 5483 6170 * * * * 7 34 5410 * 611 1534 * * 7094 1564 0 D 8 6661 * 3511 7469 * 292 6690 * 6555 * * 4406 * * * 6323 * * * * 8 15 6560 * 1000 1000 * * 7086 1000 0 R 9 5620 6190 * 3991 4985 * 6560 3622 2148 * 6484 4859 * 2811 2222 * 4214 3740 * 5451 9 0 * * * * * * 7086 0 0 I 10 4708 6323 3213 2153 * * 6797 5144 3871 5122 * 5483 2685 3472 4427 4070 3583 6200 6478 * 10 31 5552 * 1421 674 * * 7086 1550 0 V 11 5188 4337 * * 2930 * * 2428 * 3200 4835 * * * 6616 6540 * 1931 6345 2584 11 0 * * * * * * 7103 0 0 E 12 3973 5827 4370 1655 * * 4360 * 4063 5991 6740 4697 4310 4058 5030 4188 2661 5238 * * 12 30 5616 * 2010 412 * * 7103 1471 0 V 13 1729 3723 * * 5262 4312 * 3699 * 5848 4969 * * * * * 4745 1458 * 5733 13 12 6881 * 0 * * * 7103 1000 0 P 14 3936 * 3160 2344 5023 4025 5846 * 4368 6515 * 4390 2567 5396 3907 4121 5668 6686 * 3983 14 15 6560 * 3000 193 * * 7103 1000 0 P 15 2455 * 4299 2218 * 5051 * 6755 2680 5665 * 6666 3144 4096 3897 4258 4806 * * * 15 14 6692 * 1585 585 * * 7103 1000 0 G 16 6920 * 3131 4137 * 749 5080 * 5116 * * 3248 * 6137 * 5874 5623 * 6578 * 16 18 6329 * 0 * * * 7103 1080 0 T 17 3880 * 3371 2047 * 5868 5529 4715 4089 4380 3804 5397 * 3032 6454 4683 3143 5130 * * 17 0 * * * * * * 7103 0 0 S 18 * * * * 6720 * * 4919 5556 6901 6364 2815 3638 * 4869 2611 1147 4826 * 6867 18 0 * * * * * * 7103 0 0 V 19 5680 * * * * * * 1960 * 1435 5274 * * * * 5390 * 1719 * * 19 20 6169 * 1000 1000 * * 7103 1208 0 M 20 3321 * * * 4012 * 4670 3212 6538 976 5939 * * 6400 4951 6364 * 4463 5888 4769 20 0 * * * * * * 7103 0 0 D 21 3486 * 1887 2874 * * 6626 * 4944 6598 * 5538 * 2332 5036 3337 4317 4611 6584 * 21 0 * * * * * * 7103 0 0 A 22 889 6137 * 7064 3751 6125 * 3981 6598 6606 6615 * * * * 6179 5794 2298 * 5615 22 15 6560 * 4644 59 * * 7103 1000 0 V 23 1995 3530 * 5332 5656 * * 3574 * 1439 4718 * * * * 4292 6414 4303 * 6205 23 48 5454 6692 3000 193 * * 7103 1000 0 F 24 4094 * 6897 3634 5066 * 6139 4881 3385 1960 6114 4332 * 3845 2749 5465 4224 5134 5198 7055 24 0 * * * * * 0 7098 0 1000 H 25 2742 * 5091 3907 * 5281 4214 5147 3008 5756 * 4148 * 4518 2537 2942 5815 6502 * 3784 25 28 6316 7299 619 1519 * 0 7098 1080 1000 A 26 2038 * * 5360 6517 5453 3762 4152 * 2783 * 2692 * 4033 * 3537 5106 3439 * * 26 31 6543 6588 0 * 1117 891 6945 1000 1458 G 27 * * 3688 5712 5356 775 5152 * 4488 * * 3381 * 4973 6598 4268 6466 * * 5621 27 102 4377 5617 1583 586 0 * 7099 3002 1611 Y 28 5700 * 5557 5617 6708 5590 3669 1474 4237 4347 5934 6901 5335 6640 6415 6772 4768 2272 * 4511 28 34 6496 6386 1585 585 1000 1000 7082 1000 1612 D 29 4716 * 3289 2567 3973 * 3399 6122 3407 4823 * 4202 4080 4663 3845 6710 3791 5026 6180 4654 29 101 4168 6354 1532 612 * 0 7072 2880 1603 V 30 5048 * * * 4852 6548 4966 1071 * 3436 6223 6419 5327 5807 5715 6483 5584 2514 5604 6721 30 26 6492 7206 1585 585 1551 602 7057 1000 2122 P 31 5241 5846 4333 4568 * 5050 6688 4446 * 6272 * 4802 819 * 4191 3933 4890 6796 * * 31 0 * * * * 1568 593 6970 0 1857 L 32 3196 * 6673 5018 5204 5551 2507 * 5059 6990 * 5668 5641 5299 2769 3557 2184 6562 * 4044 32 26 5790 * 1000 1000 911 1095 6937 1568 1436 F 33 4629 * 4751 6635 2662 4903 * 5001 5560 1693 * 4485 4407 5844 4071 3676 4720 5463 * 4276 33 38 * 5283 * * 0 * 6948 0 1000 C 34 6706 637 * * * 4888 * 6756 6388 5633 6802 4285 * * 5558 4519 3169 6195 * 5473 34 372 4456 2459 1626 565 866 1148 6901 2315 1552 S 35 4906 * 3904 6191 4399 2675 2833 * * 6534 * * 4571 * 4132 3593 6493 4952 3676 2136 35 56 6851 5087 1000 1000 2483 284 6654 1000 4366 E 36 5287 6011 4330 4364 4927 4951 1542 6436 * 3594 6051 4397 * 4470 3782 4620 3737 4373 * 6221 36 83 6322 4529 2000 415 * 0 6619 1000 4215 K 37 5499 5682 4199 3296 6404 3128 5471 5578 3271 5973 * 5385 1790 4300 4027 3707 6479 * * * 37 64 5186 5987 2239 343 2831 218 6556 1707 4718 H 38 2548 6105 4168 4782 5784 2919 4870 5420 3314 4545 6483 3592 6150 6454 3015 4084 6034 5407 * 5052 38 86 4624 5849 1331 731 3839 104 6535 1912 4636 L 39 4657 4194 6952 6086 3036 4026 6246 4067 4345 1512 4592 5173 6413 5210 5293 5292 6447 5164 * 5126 39 42 5127 * 1632 562 1397 689 6507 1582 4698 S 40 3431 2284 6656 4659 * 2051 6743 * 6662 * * 4706 3897 5546 4111 2951 4597 5431 * 6217 40 63 5068 6244 1934 438 1065 937 6752 2087 3971 P 41 4195 * 4587 4155 * 2091 5202 3999 4132 4745 6205 5167 2977 5550 3878 4564 4898 3393 * * 41 46 4995 * 1712 525 1855 467 6808 2139 3251 I 42 2784 4229 5677 4372 5151 5411 5394 3326 3359 5130 3401 5222 5513 4539 * 3661 5680 3369 * 4299 42 76 4291 * 1397 689 318 2337 6865 2861 2810 G 43 3992 * 4834 6357 5629 401 * * 6749 6307 * 5564 * 4663 * 5656 6641 * * * 43 0 * * * * * 0 6971 0 1000 A 44 3335 5160 * 3938 6901 3943 4913 4596 5309 5193 6386 3358 6521 3903 3974 3633 2586 3195 * * 44 41 5143 * 2903 207 0 * 6971 2360 1000 C 45 * 62 * * 5666 * * * * * * * * * * 5484 * * * * 45 0 * * * * * * 6951 0 0 R 46 5454 * 3973 6777 3693 1751 5497 * 4763 * * 4984 * 3937 1806 5501 5784 * 5105 5732 46 20 * 6193 * * * * 6951 0 0 M 47 3802 5137 4294 3348 * 5383 * 4671 4014 3370 3123 * 5638 4115 6324 3691 3010 3256 * 5837 47 22 * 6017 * * 0 * 6967 0 1000 C 48 * 43 * * * * * * * * * * * * * 6738 * 5627 * * 48 15 6631 * 1000 1000 * 0 6961 1000 1000 L 49 3066 * * 5611 * * 6787 5547 3564 1735 3755 6639 * 5650 3776 4500 3944 2975 5501 6740 49 0 * * * * 0 * 6961 0 1000 V 50 4190 * * * 6505 * * 4610 * 5768 4560 * * * * * * 264 * * 50 12 6879 * 1585 585 * * 6951 1000 0 R 51 5507 * 6747 1453 * 6707 3956 4827 3818 4113 5578 5532 6671 4752 3401 5352 3421 5220 6380 5335 51 93 5592 4591 1759 505 * * 6951 1602 0 I 52 5364 * 6618 * 6565 * * 2247 4927 4503 5635 * * 5205 6015 6618 5615 835 * 6208 52 211 3580 4255 2278 333 * 0 6947 3205 2570 G 53 3747 * 1739 3495 * 3171 * 5984 4956 * * 2599 * 4389 4614 4226 5351 4425 * * 53 202 3944 3933 3700 116 3020 190 6925 2628 3607 L 54 5489 6377 4619 3260 * 956 * 5722 4402 4663 6720 5197 * 4069 5331 4495 4877 * * * 54 210 6557 3001 3459 138 1138 874 6912 1000 4272 I 55 5194 6632 4609 2757 5036 2708 * 2809 4165 4177 4712 5122 5265 * 4851 5723 4363 2822 * * 55 205 * 2916 * * 1555 600 6907 0 4634 Q 56 3306 * 3098 2794 * 5078 3794 * 3297 6137 * 3985 2756 4636 3571 4112 6359 6088 * * 56 37 * 5321 * * 2750 232 6787 0 5102 W 57 6733 * 3565 6679 4975 2412 5447 6410 2970 5967 5703 2557 4962 5247 3531 3943 5561 5720 4479 6135 57 364 6105 2261 2322 322 2617 257 6733 1000 5063 Q 58 3166 * 4306 4471 4967 5087 5189 6252 4488 5105 6294 4189 3968 2632 3178 4840 3902 4389 6103 4323 58 117 * 3681 * * 4512 65 6450 0 5500 P 59 4023 * 3536 4737 5491 2510 * 5927 3934 5400 * * 2384 6028 3188 4246 3577 4561 * 5964 59 189 3263 5761 2425 297 1418 677 6412 3300 5779 K 60 5737 * 5657 3942 * 2765 * * 1632 * * 6063 * 4131 1993 3553 * 5778 * * 60 51 4845 * 3095 180 1632 562 6673 1726 4981 L 61 4201 * 5025 5826 5197 6020 * 4439 4750 1864 4939 5848 2759 * 3605 6459 3624 3799 5296 5208 61 90 4895 5216 3476 136 275 2528 6804 2011 4465 A 62 3637 * 6271 5047 5518 * * 4255 4830 3749 6585 * * 2921 4863 * 4886 1053 * * 62 15 * 6573 * * 1142 871 6850 0 2301 A 63 2927 * * * * * * 4693 3366 2320 4614 3995 3515 4212 2754 * 3490 6547 * 4659 63 62 4578 * 3128 175 551 1655 6984 2056 2101 S 64 747 * * * * 4343 * * * * * * * * * 1747 4543 6144 * * 64 43 5076 * 3584 126 * 0 6983 2193 1000 C 65 * 36 * * * * * * * * * * * * * 5342 * * * * 65 15 6548 * 1000 1000 0 * 6983 1000 1000 V 66 3720 4949 5348 4933 * 4527 4651 6757 3896 4142 3332 4716 * 2528 4464 3921 3371 3329 * * 66 0 * * * * * * 7001 0 0 T 67 4639 4352 * 5510 6130 * 4466 4642 6506 4254 6815 * * 6715 5072 5123 881 3936 * 4619 67 0 * * * * * * 6883 0 0 A 68 4805 * 6580 5010 * 6247 6095 6349 2872 3311 5605 5642 1625 4110 3030 6958 4833 4402 * 6672 68 16 6513 * 1000 1000 * * 6883 1000 0 V 69 2539 * * * * * 6166 2965 * 3864 * * 3557 * * 6482 * 940 * * 69 0 * * * * * * 6844 0 0 A 70 3240 6468 4304 2132 5453 4418 4902 6711 4406 5254 6710 6539 * 3565 3821 3787 3934 4775 4992 4762 70 15 6610 * 1000 1000 * * 6835 1000 0 D 71 3657 * 1437 1973 * 4563 * * 6323 * * 5131 3161 4744 5039 6227 5603 * * * 71 35 5403 * 681 1411 * * 6835 1655 0 G 72 * * 2539 * * 625 * * 6520 * * 3243 5099 6300 * 5559 * * * * 72 11 7024 * 1000 1000 * * 6818 1000 0 M 73 6910 4725 6378 6247 * * * 4224 * 3190 646 * * 3755 * * 4792 5914 * * 73 0 * * * * * * 6818 0 0 V 74 4401 5696 4592 2132 * * 3868 3228 4255 5475 * 5499 * 4608 3879 4201 4227 2600 * 6652 74 0 * * * * * * 6749 0 0 V 75 * * * * 6006 * * 893 * * * * * * * * * 1166 * * 75 0 * * * * * * 6729 0 0 D 76 5454 * 5260 1676 4562 * 5524 5946 2922 5735 * 4398 * 4870 3917 6213 3938 3286 5208 4296 76 0 * * * * * * 6596 0 0 T 77 * * * * * * * * * * * * * * * * 0 * * * 77 0 * * 0 * * * 5929 0 0 //