HHsearch 1.5 NAME d2ffma1 FAM FILE d2ffma1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2ffma1.a3m DATE Tue Mar 9 00:42:07 2010 LENG 83 match states, 83 columns in multiple alignment FILT 92 out of 96 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.4779 2.5753 SEQ >ss_dssp CCEEEEEECSSSSEEEEEESSCCSSSCCEEECSCCTTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHHTTC >sa_dssp DECEDDDECEEECBBDACBDEECEDEEDDEBEEDDEEBDECABDABEBECBDBADBBDDBABACBDEECDBEDACDDADDCCE >ss_pred CCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHEEEEECCEEEEECCCCCCHHHHHHHHHHHHC >ss_conf 92056116987441232058834463222346411234538999752647010244221477514888889996399998729 >Consensus xxiIxxexTPNPnxlKFxxxxxlxxxxxxxfxxxxxxxspLaxxLfxixgVxxVfxxxdFITVtKxxxxxWxxlkpxIxxxxx >d2ffma1 XKIISISETPNHNTXKITLSESREGXTSDTYTKVDDSQPAFINDILKVEGVKSIFHVXDFISVDKENDANWETVLPKVEAVFE >UniRef50_Q6MRA2(7-88:186) Putative nitrogen-fixing protein NifU n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRA2_BDEBA E=4e-14 s/c=0.96 id=24% cov=99% --LIRIQATPNPNAWKFVLDRAVLNDGKATYADAKEAEQSiLASSLFQVEGVRQVHFFQNVITITHNFDADPEEIQRNVCSVIQ >UniRef50_C7M8X0(6-80:299) Nitrogen-fixing NifU domain protein n=2 Tax=Capnocytophaga RepID=C7M8X0_CAPOD E=4e-05 s/c=0.65 id=13% cov=92% ---LSVQPTSSPDIIKLEANKALVKGSYEYKNIDEAKNSPLAKELFYLPFVKTVYISSNFIALKRFPIIEWKDVQEEV----- >UniRef50_B1YJ97(2-80:363) PBS lyase HEAT domain protein repeat-containing protein n=2 Tax=Exiguobacterium RepID=B1YJ97_EXIS2 E=3e-12 s/c=0.92 id=26% cov=96% -KIIAIEPTPSPNNMKVIVDETFSEKGQTF--EHAFGAPDHVAKLLEIPGIKSVYQVSDFLAVERFPKYDWRTLVIEIRRSF- >UniRef50_D0RQK0(1-80:179) NifU domain protein n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQK0_9RICK E=3e-12 s/c=0.91 id=22% cov=98% --MINVVDTPNPDTKKFVFDQTIVKIGSKEFKKSDQSNIDLVNDLFLIKELELVYLDKNFISIKKNKDSSWDDIVQDILEAL- >UniRef50_C4KB11(6-85:202) Nitrogen-fixing NifU domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4KB11_THASP E=7e-11 s/c=0.85 id=20% cov=96% ----AVMSTPNPLANKFMLDAPLYTGAPRHFSAGVAvVGDTLGESLLAVPGVVDIYCTGGFITITRDPGTPWSAIEPAVTELIE >UniRef50_C4QXG5(22-115:257) Protein involved in iron metabolism in mitochondria n=2 Tax=Saccharomycetaceae RepID=C4QXG5_PICPG E=8e-11 s/c=0.72 id=26% cov=98% ---IQTASTPNDNALKFItkgvrllPPHIQKSTIEIDDLASATEKSPLALQLFKVPGVKSILIGDDFITVNKvdeklsnSDHSRWQFLKPQIINVID >UniRef50_A4GIY5(5-86:92) Putative nifU domain protein n=1 Tax=uncultured marine Nitrospinaceae bacterium RepID=A4GIY5_9DELT E=2e-07 s/c=0.70 id=21% cov=94% ---VTVETTPNEHALKFSVNQQILDSGYKTFNSLEEAKDfPVAAKIFANEAVASVFVMAQpssaFITVTKKPETSWGDLQNKIVE--- >UniRef50_A7E2N1(53-137:157) Hirip5 protein n=2 Tax=Danio rerio RepID=A7E2N1_DANRE E=3e-09 s/c=0.74 id=18% cov=95% ---IQTQDTPNPNSLKFLPGRAVLDSGTMDFagprDAPRADTAPSEDDDEVVAMIKELLDTRIRPTVQEDgsGETEWKVIKPDVFAT-- >UniRef50_B5KEF2(10-88:419) NifU-like domain protein n=2 Tax=Octadecabacter antarcticus RepID=B5KEF2_9RHOB E=5e-08 s/c=0.75 id=17% cov=94% ---IRVQPTvKDPQTLRFILEAPVQDSTSVCYDDA-SADAPLARALFAISGVQRVEVDGASIYVSRSTDVDWSALKAPIAVA-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 K 2 * * * 1919 * * * * 837 * * * * * 2506 * * * * * 2 0 * * * * * * 3487 0 0 I 3 * * * * * * * 1101 * 1526 3319 * * * * * * 3535 * * 3 0 * * * * * * 4572 0 0 I 4 5651 * * * * * * 564 4302 3811 * * * * 4833 * * 2768 * * 4 0 * * * * * * 5323 0 0 S 5 3588 * * 3737 * * 4284 * 6239 4882 * 5501 * 1445 2884 2735 4831 * * 4913 5 0 * * * * * * 5421 0 0 I 6 4169 * * * 5980 5056 * 1572 5134 5056 5873 * * * * 5023 1859 2473 * * 6 17 6432 * 1000 1000 * * 5421 1000 0 S 7 5222 * 5329 905 * * * * 3733 * 5078 5296 * 2215 * 4358 * 5648 * * 7 27 5734 * 1000 1000 * * 5555 1000 0 E 8 3412 * 3460 3129 * 5037 * * * * 5369 4747 1982 5343 * 3309 2609 5618 6536 4824 8 0 * * * * * * 5502 0 0 T 9 * * * * * * * * * * * * * * * 5945 24 * * * 9 26 5811 * 0 * * * 5495 1000 0 P 10 4607 * * 5902 * * * * 5811 * * 6101 160 * * 6056 * * * * 10 0 * * * * * * 5495 0 0 N 11 * * 3791 * * * * * * * * 324 * * * 2956 * * * * 11 0 * * * * * * 5495 0 0 H 12 * * 5108 4243 * * 5677 * * * * * 183 5795 * * * * * * 12 0 * * * * * * 5504 0 0 N 13 3385 * 2612 4850 * * 6097 * 5925 5227 5248 1078 * 4368 6144 3959 5550 * * * 13 0 * * * * * * 5504 0 0 T 14 1696 4005 * * 5762 * * 4301 * * * 5448 * * 6276 2193 2181 3557 * * 14 0 * * * * * * 5504 0 0 X 15 * 4995 * * * * * 5175 5683 1012 1665 5223 * * 6343 * * 4326 5559 * 15 0 * * * * * * 5498 0 0 K 16 * * * * * * * 5468 263 * 4905 * * 5550 3710 * 6297 * * * 16 0 * * * * * * 5504 0 0 I 17 * * * * 440 * * 4066 * 3703 * * * * * * * 3822 * 4168 17 0 * * * * * * 5504 0 0 T 18 * * * 4301 5693 * * 2231 * 2123 4319 6257 * * * 5358 2781 2238 * 4558 18 50 4870 * 1945 434 * * 5504 1956 0 L 19 2858 * * * 5691 * * * * 1638 * * 1702 * * 3770 5477 3079 * * 19 40 5187 * 1000 1000 * * 5504 1614 0 S 20 * * 1989 4548 * 2032 5307 * 6189 * 6595 2377 4018 6093 * 3086 5332 * * * 20 51 5033 7857 976 1025 * * 5504 2034 0 E 21 3509 5254 6042 2374 4673 4783 5718 * 2248 4620 6730 * * 3559 2913 * 5107 4327 * 5241 21 55 4749 * 1088 917 * 0 5505 2115 1000 S 22 3944 6733 4104 3175 * 6334 * 5670 3598 4571 5857 4474 2499 4048 4541 3867 3253 3570 * * 22 62 5660 5485 659 1447 * 0 5505 1626 1000 R 23 4850 * * * 4407 6119 * 3373 5344 1410 6719 5414 6270 6333 4467 * * 1724 * * 23 132 3518 * 653 1458 381 2108 5543 2894 1879 E 24 6779 * * 3245 4800 6610 4998 4874 6390 2075 4023 * 2943 4191 * 4423 4357 2769 * 4785 24 39 5213 * 1209 818 * 0 5505 1704 1000 G 25 4383 * 2526 2690 * 2634 * * 4167 6923 * 4076 3224 * 6251 3735 3208 5504 6185 * 25 9 7277 * 1000 1000 * 0 5505 1000 1000 X 26 4747 * 4069 4432 * 1701 * 4302 3649 * 5548 4634 6097 4128 4581 2978 3814 5048 * 6022 26 0 * * * * * 0 5499 0 1000 T 27 4776 * * 6610 5499 1255 * 4257 3176 4783 6475 3919 6393 5642 5958 3733 3522 5296 * * 27 25 5852 * 1468 647 * 0 5505 1559 1000 S 28 4122 * * 5529 4612 6374 6712 4893 5079 4073 * 6606 3890 5838 4686 1786 2244 4723 * 3993 28 10 7242 * 0 * * 0 5505 1000 1000 D 29 3817 5307 4474 2996 4076 5211 4909 3930 3586 4005 4128 4291 * 3976 4184 5006 4474 3699 * 5459 29 15 6610 * 0 * * 0 5505 1000 1000 T 30 4881 5038 2283 3096 2919 * 5225 * 6101 5111 * 4093 * 6184 * 2822 2990 6113 * 4143 30 25 7267 6522 0 * * 0 5505 1000 1000 Y 31 5777 * 5133 * 1203 6267 * 5852 3685 4729 * * 5289 * * 5073 4573 4450 * 2120 31 57 4685 * 1666 546 * 0 5497 1501 1381 T 32 3821 * 3127 4705 * 6086 6299 6869 2768 4248 5341 4265 3151 6532 5918 2364 3276 5210 * * 32 30 5601 * 979 1021 651 1462 5497 1685 1381 K 33 2855 * 3226 4375 * 5549 6374 3640 3059 * 7093 3043 3537 5921 4965 3220 3484 6263 * * 33 19 6244 * 0 * * 0 5505 1305 1000 V 34 2117 * 3758 4016 6175 3242 4942 5314 4264 4270 * * 3079 4819 4668 4194 3969 4605 * * 34 82 5265 5084 567 1623 * 0 5505 1870 1000 D 35 2955 * 2851 1980 * 6002 6246 * 4305 6666 * 3916 * 3233 3216 3914 6020 5173 * * 35 76 4278 * 0 * 389 2080 5534 2284 2008 D 36 1621 5466 3786 2594 5446 6893 6149 4613 * * * 7084 6348 4067 6995 3429 2757 * * * 36 80 4214 * 294 2438 * 0 5505 2427 1000 S 37 1608 * 3767 3316 * 2652 6110 * 4977 7027 6893 * 5604 5169 5648 3330 4361 4053 * * 37 138 3451 * 999 1001 * 0 5505 2707 1000 Q 38 3057 6606 3093 2660 6730 3502 4551 * 3637 * 7086 3594 7142 3552 4382 4355 4371 4724 * 6983 38 107 3808 * 1104 903 * 0 5505 2754 1000 P 39 2929 * 3622 6936 * 5525 4938 4801 5485 * * 4851 3105 4696 6983 1203 7086 6113 * 6249 39 43 5077 * 790 1245 * 0 5505 1944 1000 A 40 4167 * 3430 4447 * * * * 4487 6648 * * 781 * 6653 3039 5343 6276 * * 40 50 4865 * 0 * * 0 5505 1658 1000 F 41 6610 * * * 3689 * 5446 6249 * 562 6302 * 3263 * * 5116 6172 4674 * * 41 0 * * * * * 0 5505 0 1000 I 42 713 * * 5116 6101 5258 * 3716 * 2597 * * * 6276 * * * 3919 * * 42 22 6029 * 0 * 0 * 5505 1668 1000 N 43 1873 * 5117 3434 * 4828 * * 3083 4799 * 3136 * 2871 3202 5562 5625 5957 * * 43 85 4503 6277 0 * * * 5504 2460 0 D 44 2482 * 3638 3069 * * 7240 * 2478 4721 * 4702 * 3170 3091 3254 5280 * * * 44 51 4841 * 0 * 0 * 5491 2120 1000 I 45 * 6188 5117 * * * * 3099 * 250 * * * * * * * * * * 45 18 * 6368 * * * * 5504 0 0 L 46 * * * 5098 660 * * 6192 * 1965 4670 * * * * * * 6615 * 5748 46 91 4027 * 0 * * 0 5496 2568 1000 K 47 2258 * 3957 3321 * 3547 6291 * 3389 4909 5749 4108 * 4097 3288 3663 5393 5098 * 5052 47 0 * * * * * 0 5496 0 1000 V 48 * 5853 * * 2883 * * 1001 * 2698 * 6094 * * * * * 2483 * * 48 0 * * * * * 0 5496 0 1000 E 49 4513 * 2140 2185 * 4764 5464 * 4480 * * 4946 1885 5769 6546 3777 * * * * 49 0 * * * * * 0 5496 0 1000 G 50 6094 6096 5157 4942 2519 635 6168 * * * 5098 5413 * * * 6343 * * 6261 * 50 0 * * * * * 0 5496 0 1000 V 51 6106 * * * * * * 2378 * 5681 * * * * * * 6261 395 * * 51 0 * * * * * 0 5496 0 1000 K 52 4583 6657 3234 3653 * 6118 * 6168 1686 * * 4559 * 3866 3237 4338 3190 4400 * * 52 0 * * * * * 0 5496 0 1000 S 53 4273 * 4264 3643 * 3460 6343 * 4208 5681 * 3887 * 4792 3090 1518 3854 * * * 53 0 * * * * * 0 5496 0 1000 I 54 * * * * * * * 2176 * 4055 * * * * * * * 477 * * 54 0 * * * * * 0 5496 0 1000 F 55 * * * 5802 823 * 4792 * * 3022 3970 * * * * * 5790 * * 2508 55 0 * * * * * 0 5496 0 1000 H 56 3979 5220 5098 * 1928 5244 4060 2227 * 3059 5706 * * 4718 6236 * * 4454 * 3612 56 0 * * * * * 0 5496 0 1000 V 57 2919 * 3544 * 4555 1679 * * * 6657 4266 6216 * * 6182 3372 3303 3376 * 4513 57 0 * * * * * 0 5496 0 1000 X 58 2601 * 3427 3647 * 2931 5100 * 3682 5447 5272 5164 3472 4002 4124 3213 5077 * * * 58 0 * * * * * 0 5491 0 1000 D 59 5802 * 994 4926 * 5220 * 5098 * * * 1686 * 5061 4773 6198 * * * * 59 21 6094 * 2000 415 * 0 5496 1000 1000 F 60 * * * * 451 * 5464 6198 * * * * * * 5098 4994 5790 4792 6168 3270 60 0 * * * * 0 * 5496 0 1000 I 61 5468 * * * * * * 858 * 3360 * * 5117 * * * * 1740 * * 61 0 * * * * * * 5504 0 0 S 62 2675 * * * * * 6368 * * * * * * * * 2243 762 6276 * 5845 62 0 * * * * * * 5504 0 0 V 63 * 6712 * * * * * 2121 * 3425 6110 * 6368 * * * * 642 * * 63 0 * * * * * * 5504 0 0 D 64 5030 6238 3883 3582 * 5457 * * 4867 6368 * 3383 * 4014 * 3378 1053 * * * 64 0 * * * * * * 5504 0 0 K 65 6718 * 6368 5117 * * 5562 * 565 * * * * 5150 2300 5550 * * * * 65 56 4707 * 1573 591 * * 5504 1842 0 E 66 3894 * 2787 3606 4257 5500 5456 * 3800 4499 * 2595 * 3450 6664 3013 4624 4802 * 5295 66 61 5117 6276 1000 1000 * * 5504 1000 0 N 67 3629 * 2121 3147 4867 2996 * * 5682 * * 5641 1904 * 5854 6085 3975 6102 * * 67 17 6387 * 0 * 0 * 5503 1000 1000 D 68 6143 * 1899 2434 * 3553 3812 4604 4510 * 5859 4141 * 5871 5798 3110 4580 6420 6265 * 68 8 7500 * 0 * * * 5504 1000 0 A 69 1985 * 5006 * 7242 4811 5185 3890 6305 7454 5522 * * * * 3291 2584 2348 * 3764 69 0 * * * * * * 5504 0 0 N 70 6718 * 1516 1780 * * 5859 * 5762 6277 * 3439 4368 * 4910 3346 6110 * * 6112 70 38 5249 * 596 1564 * * 5504 1653 0 W 71 * * * * * * * * * * * * 5562 * * * * * 31 * 71 0 * * * * * * 5504 0 0 E 72 3324 * 2749 2106 6188 3917 6114 * 4018 * * 4162 5795 3095 4880 3354 5243 6154 * * 72 0 * * * * * * 5504 0 0 T 73 3817 * 2452 2403 5140 6238 4989 4245 * 4327 4827 5285 * 6449 6257 3387 3702 3174 * 6263 73 0 * * * * * * 5504 0 0 V 74 * * * * * * * 1753 * 1082 6449 * * * * * * 2188 * * 74 0 * * * * * * 5504 0 0 L 75 4117 * * 3983 * * * 6522 1224 2400 6245 5285 * 4147 4499 6247 5234 3808 * * 75 0 * * * * * * 5436 0 0 P 76 3737 * 5073 5926 6171 * * 5282 * 5873 4570 5904 614 4706 4118 6135 * * * * 76 0 * * * * * * 5392 0 0 K 77 4073 * 2837 1421 * * 4624 6526 4118 * * 3702 5015 2889 5936 5811 4602 * * * 77 0 * * * * * * 5392 0 0 V 78 5021 * * * * * * 1181 * 3622 * * * * * * 6214 1207 * * 78 0 * * * * * * 5392 0 0 E 79 5311 5104 * 2949 2779 5762 * 5269 3158 2824 5237 * * 4722 2708 * 4285 4178 * 4354 79 0 * * * * * * 5317 0 0 A 80 2065 * * 1466 * 5710 * * * 5121 5653 4198 * 5989 4994 4026 3359 3820 * * 80 0 * * * * * * 5287 0 0 V 81 1855 * * * * * * 5164 * 2856 * * * * * 4272 3031 1383 * * 81 0 * * * * * * 5030 0 0 F 82 * * * * 1610 * * 2196 * 1463 4068 * * * * * * * * 4972 82 0 * * * * * * 4686 0 0 E 83 * * 1657 1049 * * * * * * * * * 2326 * * * * * * 83 0 * * 0 * * * 3874 0 0 //