HHsearch 1.5 NAME d2ev0a1 FAM FILE d2ev0a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2ev0a1.a3m DATE Mon Mar 8 15:49:58 2010 LENG 57 match states, 57 columns in multiple alignment FILT 101 out of 318 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.3797 -0.9152 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHHHHHHTTSCBCCCBC >sa_dssp EDEDADDBCDCAEDBCEEDEDBDDDBABEDCEDEDDDADEBBEDADEDEDAEEEBDD >ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCC >ss_conf 977699999999999983898529999998189813399999999987983207219 >Consensus xtxsxEdYLxxIyxlxxxxxxvxxxxiAxxLxvsxpSVsxmikrLxxxGlVxYGxix >d2ev0a1 TTPSMEDYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYGLVL >UniRef50_A3HS31(2-54:219) Iron dependent repressor n=2 Tax=Bacteroidetes RepID=A3HS31_9SPHI E=9e-05 s/c=0.90 id=24% cov=95% ASQTEENYLKALFNLANEENEVNISELAGQMQVSMPTVNSMVKNMQKNGWVIY---- >UniRef50_A5CU24(7-65:224) SirR protein n=2 Tax=Clavibacter michiganensis RepID=A5CU24_CLAM3 E=1e-06 s/c=0.92 id=21% cov=98% -SSAAQDYLKLIWSATEwTDQPMTVSRLADRLGIRPATASDGIRRLTAQGLVEhrpYGSI- >UniRef50_D2RJF5(6-55:127) Iron (Metal) dependent repressor, DtxR family n=4 Tax=Clostridiales RepID=D2RJF5_ACIFE E=1e-08 s/c=1.22 id=25% cov=89% -TESTEMYLETILVLKNRLGLVRSIDIANEMGYSKPTISVAMKKFRAEGLV------ >UniRef50_C0C104(10-57:262) Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C104_9CLOT E=0.0005 s/c=0.95 id=27% cov=77% -----------IYDYIKKHSEVSINHIAQYFNISPVTVRRYVDKLEQNGLVsrKYG--- >UniRef50_A5VLM7(2-53:224) Iron dependent repressor n=24 Tax=Lactobacillus RepID=A5VLM7_LACRD E=5e-10 s/c=1.26 id=28% cov=93% -TPMKEDYLKIIFELGGSHKKVSNKEISLGLGIAAGSVTEMISKLADEGLVVH---- >UniRef50_C7H441(10-61:132) Transcription repressor n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H441_9FIRM E=0.0004 s/c=0.88 id=26% cov=88% -------YLLAIYEVSQTHLDICSRSIAEKLNVTKPSVVRIMNLLMDRGMIvkeHYGKI- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 1283 * * * * * * * * * * * * * * 3025 1100 * * * 1 0 * * * * * * 3612 0 0 T 2 * * * * * 5213 * * * * * * * * * 1067 1013 * * * 2 0 * * * * * * 5247 0 0 P 3 2711 * 5921 2320 6006 * 5802 4867 6049 5514 * 5757 1679 3611 * 3403 5752 * * * 3 0 * * * * * * 5247 0 0 S 4 2273 * * * * 5429 * * 4949 5788 6320 3797 5573 * 3443 1427 3444 4100 * * 4 0 * * * * * * 5402 0 0 M 5 5221 * * 3101 * 6184 5154 3794 3141 2477 3034 * * 4684 4510 6019 4235 2584 * 6706 5 0 * * * * * * 5502 0 0 E 6 6299 * 5239 380 * 5895 * 4944 6161 * * * * 3680 5158 * * 5443 * * 6 0 * * * * * * 5468 0 0 D 7 * * 965 3448 * * 6232 5978 4850 * 3079 2537 * 5916 6183 * 6453 * * * 7 18 6335 * 1000 1000 * * 5487 1000 0 Y 8 * 5266 * * * * * 5158 * 6369 * * * * * * * * * 99 8 0 * * * * * * 5562 0 0 I 9 5327 * * * * * * 2944 * 378 5678 * * * * * * 4153 * * 9 0 * * * * * * 5688 0 0 E 10 * * * 1581 6880 * * 5081 1374 3655 6343 * * 4657 4031 * 5133 5571 * * 10 0 * * * * * * 5699 0 0 Q 11 1473 6719 * 5254 6611 6646 * 4850 6425 4287 4181 5399 * 5531 6356 4831 2184 3333 * 5697 11 15 * 6611 * * * * 5717 0 0 I 12 * * * * * * * 496 * 2924 4667 * * * * * 5742 3305 * * 12 56 6592 5191 1000 1000 * 0 5723 1000 1000 Y 13 3551 * 5055 * 3219 * 5182 6104 6094 2868 * * * * 6480 6052 * 6739 3966 1047 13 0 * * * * * 0 5684 0 2031 M 14 4209 5439 3927 2197 * 6827 4965 4599 4687 3441 5624 4242 * 4485 2912 3848 5609 4555 * 4545 14 0 * * * * 1671 544 5684 0 2031 L 15 3990 4965 * 6544 5408 * * 2905 6865 695 5799 5248 * * * * 6000 4698 * 6303 15 28 5705 * 0 * 0 * 5894 1000 1753 I 16 4656 6682 6139 3143 * 3673 5406 4002 4480 3079 5394 6471 6110 3045 4638 2344 4005 5833 * 6966 16 14 6713 * 1000 1000 * * 5731 1000 0 E 17 3676 * 5451 2001 6535 4355 6398 4850 3012 3982 5657 4210 * 3425 3673 4482 4702 6010 6430 * 17 64 4524 * 0 * * * 5925 2513 0 E 18 4527 5505 3914 1649 * 5756 * * 2668 * * 6430 5725 4308 3042 3627 3851 * 5582 * 18 21 6136 * 495 1783 * * 5925 1598 0 K 19 6360 * 3780 3883 6212 2399 3558 * 2626 5323 6033 3212 7161 3778 4025 4719 5324 4481 * * 19 25 6535 7242 1585 585 * * 5925 1000 0 G 20 6513 * 4222 3057 6121 1699 6918 5406 3319 5231 * 4040 5290 3701 5130 3909 4380 5165 * * 20 132 3518 * 419 1989 0 * 5730 3087 1000 Y 21 3596 6497 3770 2951 * 4513 5377 6507 3620 5285 6886 4634 2498 6060 3684 5373 4560 4001 4443 5366 21 58 4663 * 406 2028 * * 5925 2213 0 A 22 2620 5495 * * * * 6173 3127 * 4226 5871 * 3465 * * * 4828 1028 * * 22 0 * * * * * * 5925 0 0 R 23 5277 6522 * * * 5876 5799 5687 3325 4362 6697 4251 5725 * 1604 2251 2930 * * 6753 23 0 * * * * * * 5925 0 0 V 24 3984 6113 * 6212 6173 6453 * 3762 * 2913 5614 3326 5776 4572 4055 3285 2544 2621 * * 24 17 6430 * 1000 1000 * * 5925 1000 0 S 25 3434 6586 * * * 3428 * 4322 2755 * 5495 3927 * 6698 4910 2112 3260 2842 * * 25 0 * * * * * * 5925 0 0 D 26 3871 * 1389 2317 * 6698 5427 * 3913 4676 5523 * * 5276 3247 5661 5158 6621 * * 26 0 * * * * * * 5925 0 0 I 27 * * * * * * * 1250 * 1232 5017 * * * * * * 3024 * * 27 0 * * * * * * 5925 0 0 A 28 515 4963 * * * 5554 * 6526 * * 6507 * * * * 2906 5991 3721 * * 28 0 * * * * * * 5925 0 0 E 29 3840 6821 3273 2099 * 5009 5954 * 3140 6197 * 4325 * 3794 2667 4184 4601 5714 * 6010 29 0 * * * * * * 5925 0 0 A 30 3113 6442 5064 3912 5102 6091 4311 4714 3808 5518 4165 6113 * 4692 2353 4415 4926 6350 4953 3033 30 0 * * * * * * 5925 0 0 L 31 * * * * 3539 * * 5575 * 639 2383 * * * 6431 * 5198 5625 * * 31 0 * * * * * * 5925 0 0 A 32 5285 * 3769 4129 * 1401 3734 * 3893 * * 2271 * 5058 * 3765 * 6398 * * 32 0 * * * * * * 5925 0 0 V 33 * * * 7042 5802 * 5636 2562 6745 3291 * * * 5131 6419 5205 5818 859 * 4741 33 0 * * * * * * 5925 0 0 H 34 3684 * 5111 6173 * * 6018 * 2723 * * 6714 * 5220 3871 1246 2503 6656 * * 34 0 * * * * * * 5925 0 0 P 35 3549 * 4396 * * 5636 5495 * 2274 4304 4692 6556 1574 4273 4017 5791 5583 5071 * * 35 0 * * * * * * 5925 0 0 S 36 2403 * * * * 3964 6260 * * * * * 1173 6010 * 2175 * 4226 * * 36 0 * * * * * * 5925 0 0 S 37 4765 * * * * * * * * * * * * * * 931 1189 * * * 37 0 * * * * * * 5925 0 0 V 38 2558 * * * * * * 4360 * * 6513 * * * * * 4660 452 * * 38 0 * * * * * * 5925 0 0 T 39 4766 * * * 6586 * 4926 5115 6033 5271 * 3480 * * 6338 1452 1602 4241 * * 39 0 * * * * * * 5925 0 0 K 40 4162 * 3908 2209 * 3644 4952 6707 2851 5447 6279 5326 * 3251 3282 3960 4813 5385 * 6889 40 0 * * * * * * 5925 0 0 M 41 2171 * * * 6033 4981 * 4079 5793 6173 1166 5094 * * * 5423 3946 4828 * 4589 41 0 * * * * * * 5925 0 0 V 42 6445 5272 * * 5315 * 6442 2180 * 1645 3949 * * * * * 6331 1752 * 6430 42 0 * * * * * * 5925 0 0 Q 43 3923 * 4325 4431 * 4432 4501 * 1473 * 7215 3704 * 3336 3075 4283 4856 * * * 43 0 * * * * * * 5925 0 0 K 44 5989 * * 4680 * * 6595 5324 1559 5192 * 4404 * 6497 1301 5641 4343 * * 6702 44 0 * * * * * * 5925 0 0 L 45 * * * * 5657 * * * * 163 3524 * * * * * * * * * 45 0 * * * * * * 5925 0 0 D 46 2495 6113 4692 2436 * 5167 * 4562 3534 5927 5661 4815 * 3788 4665 3205 3722 4049 * * 46 0 * * * * * * 5925 0 0 K 47 3180 * 3448 1609 * 5217 4752 * 2755 * * 4520 6350 5395 3284 4315 5283 * * * 47 0 * * * * * * 5925 0 0 D 48 3295 6634 3131 2898 * 6595 5839 6886 3231 3453 4544 4241 * 3559 2753 4746 4667 * * * 48 0 * * * * * * 5925 0 0 E 49 6279 * 4525 4849 * 356 5495 * 4362 * * 4753 * * * 5657 * * * * 49 0 * * * * * * 5925 0 0 Y 50 * * * 6738 3703 * 6450 5602 * 729 4729 * * * * * * 5699 5500 2325 50 0 * * * * * * 5925 0 0 L 51 5739 * * * * * * 1556 * 2800 6465 * * * * * * 1040 * * 51 141 3430 * 1513 622 * * 5925 3426 0 I 52 5459 * 4032 2020 * 6160 3724 3948 2465 * * 3458 * 3974 6474 5651 4066 3823 * 5800 52 357 2191 * 1670 544 * * 5684 3776 0 Y 53 * * * * 5263 * 2864 * * 5886 * * * * * 4942 * 5309 * 392 53 107 3812 * 2000 415 * * 5313 1614 0 G 54 * * 4645 * * 59 * * * * * * * * * * * * * * 54 0 * * * * * * 4668 0 0 L 55 4644 * 3705 4754 * * * * 3233 3635 * 4610 4699 * 3377 4553 4913 1892 * 2854 55 0 * * * * * * 4332 0 0 V 56 * * * * * * * 966 * 4654 * * * * * * 4488 1308 * * 56 0 * * * * * * 4300 0 0 L 57 * * * * * * * 1772 * 500 * * * * * * * * * * 57 0 * * 0 * * * 2897 0 0 //