HHsearch 1.5 NAME d2e9xc2 FAM FILE d2e9xc2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2e9xc2.a3m DATE Mon Mar 8 15:42:31 2010 LENG 78 match states, 78 columns in multiple alignment FILT 54 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4497 1.8432 SEQ >ss_dssp CTTTCCCCCCCTTSSSCCTTCHHHHHHTTSEEEEEESSCBTTCGGGCCCCBCTTCEEEEEHHHHHHHCCSSSSSEEEC >sa_dssp EEEEEEEDEDCDEDEECDEEAEEADECBEEECDBDACDDCDEDCEEEEEDBEEDCECEBBCECADECDCEEEEDACDE >ss_pred CCCCEECCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCEEEEC >ss_conf 973110034455343576578889631586567999830243423058764689898600998998721666605519 >Consensus xxxxxxxxxxgxxxmxxxYydIDDILaxxekIpcxfxxxixxLGxlxxxdixxGskveLPlWLAxxLxxxrxxivSVE >d2e9xc2 MSEAYFRVESGALGPEENFLSLDDILMSHEKLPVRTETAMPRLGAFFDNAVPQGSKLELPLWLAKGLFDNKRRILSVE >UniRef50_UPI000186E4B7(1-73:199) DNA replication complex GINS protein PSF1, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E4B7 E=1e-06 s/c=0.75 id=35% cov=88% MSEgSYFP----------DYFSIEDIMVTQEKVPCVTVVPFSLTGFSIeendDKHIDENVTINVPLWLAKKLCSRQIKYLKVE >UniRef50_Q8SU47(3-56:158) Putative uncharacterized protein ECU11_0920 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SU47_ENCCU E=0.0004 s/c=0.85 id=25% cov=68% ------------------YYSPDDILLGESRIQVTFKHKIRNFGFLGPRPkiLPENRRVEVPYFLVSFLLRN-------- >UniRef50_UPI0000D56A7B(3-74:200) PREDICTED: similar to predicted protein n=1 Tax=Tribolium castaneum RepID=UPI0000D56A7B E=3e-16 s/c=1.20 id=32% cov=88% LQTSYFP----------DYFSVDDILATQEKIPCKFIQNVPKLGKLnpatEDPDLQSGTVLEMPLWLVLEASLMRQPIVTAD >UniRef50_B0DK25(3-57:226) Predicted protein n=2 Tax=Agaricales RepID=B0DK25_LACBS E=3e-11 s/c=1.27 id=27% cov=62% -----------------DYFSVEAILADNQKVQCTFKHEIKNMGHLgggSERDIPVLSKMQLPIWLA-------------- >UniRef50_A5C0R7(4-60:186) Whole genome shotgun sequence of line PN40024, scaffold_67.assembly12x n=2 Tax=Embryophyta RepID=A5C0R7_VITVI E=3e-10 s/c=1.16 id=33% cov=69% ------------------YYNIDEIIVEEELVSAVFQKAANGVGILDPsaetNSVEQGSKVELPFWLAHELLQRQ------- >UniRef50_A8HYL5(1-60:204) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8HYL5_CHLRE E=6e-09 s/c=1.03 id=22% cov=69% -----------------DYWNLDAALAEETTVPLKFKYGILGVARVLEPgstnnDIDSGTKVDAPLWLAAALSRR-------- >UniRef50_C6LU05(5-66:192) Putative uncharacterized protein n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LU05_GIALA E=6e-08 s/c=0.94 id=31% cov=76% -----------------DYLSIDEALARSERISVRTRMEIHALGLLDttsaSQELQKGATVYLPLWFADRLLEP--NFITV- >UniRef50_Q4DAZ8(55-120:236) Putative uncharacterized protein n=5 Tax=Trypanosomatidae RepID=Q4DAZ8_TRYCR E=2e-08 s/c=0.92 id=31% cov=74% ----------GEVAMIKSYFDLFDILVNEETVPVTFLVSSFSLGRDIHarttdgealEEVRAGSVATVPLWAAVAL----------- >UniRef50_A0BZZ9(2-70:196) Chromosome undetermined scaffold_14, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BZZ9_PARTE E=9e-09 s/c=0.89 id=26% cov=78% ------------------YYNIEDILCEDHLVECRLEVELYKGQFLdkeahtEDGNLQRGHVMKLPLWMAKIMSEQEydgIQLVSVE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 1946 434 * * * * * * * * * 1 0 * * * * * * 1813 0 0 S 2 * * * * * * * * * * * * * 1946 * 434 * * * * 2 0 * * * * * * 1813 0 0 E 3 * * * 434 * * * * * * * * * * * * 1946 * * * 3 425 1969 * 0 * * * 1813 1000 0 A 4 1044 * * * * * * * * * * * * * * 957 * * * * 4 0 * * * * * * 1813 0 0 Y 5 * * * * * * * * * * * * * * * * * * * 0 5 0 * * * * * * 1813 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1813 0 0 R 7 * * * * * * * * * * * * 413 * 2006 * * * * * 7 1044 * 957 * * * * 1813 0 0 V 8 * * * * * * * * * * * * * * * * * 0 * * 8 0 * * * * * 0 1083 0 1598 E 9 * * * 0 * * * * * * * * * * * * * * * * 9 0 * * * * * 0 1083 0 1598 S 10 * * * * * * * * * * * * * * * 0 * * * * 10 0 * * * * * 0 1083 0 1598 G 11 * * * * * 0 * * * * * * * * * * * * * * 11 0 * * * * * 0 1996 0 1598 A 12 1238 * * 1683 * * * * * * * * * * * 1918 * * * * 12 0 * * * * * 0 1996 0 1598 L 13 * * * * * * * * * 538 * * * * * * * 1683 * * 13 0 * * * * * 0 1996 0 1598 G 14 2160 * * 2356 * 784 * * * * * * * * * * * * * * 14 0 * * * * * 0 2255 0 1598 P 15 * * * * * 3721 * * * * 316 * 3046 * * * * * * * 15 0 * * * * * 0 3430 0 1598 E 16 * * 2320 2577 * * * 2880 2807 * 3936 * * * 4382 2796 3379 * * * 16 0 * * * * * 0 3502 0 1598 E 17 3968 * 2699 2823 * 3930 3804 * 2943 * * 3945 * 2754 * 3169 4347 * * * 17 0 * * * * 0 * 3541 0 1598 N 18 * * 1519 * * 5021 * * 4771 * * 1556 * * * 2037 * * * * 18 0 * * * * * * 3827 0 0 F 19 * * * * 4575 * * * * * * * * * * * * * * 62 19 0 * * * * * * 4208 0 0 L 20 * * * * 1637 * * * * 2508 * * * * * * * * 3653 1241 20 0 * * * * * * 4208 0 0 S 21 * * 1081 * * 5343 * * * * * 2728 * * * 1508 * * * * 21 0 * * * * * * 4208 0 0 L 22 * * * * * * * 820 * 1800 * * 4563 * * * * 3265 * * 22 0 * * * * * * 4208 0 0 D 23 * * 522 2749 5137 * 5344 * * * * 4899 * * * 5364 4502 * * * 23 0 * * * * * * 4208 0 0 D 24 2577 * 612 3537 * * * * * * * * * * * 3445 * * * * 24 0 * * * * * * 4208 0 0 I 25 3932 * * * 4384 * * 241 * * * * * * * * * 4628 * * 25 0 * * * * * * 4208 0 0 L 26 * * * * 4563 * * 3288 * 364 3674 * * * * * * * * * 26 0 * * * * * * 4208 0 0 M 27 1120 4415 * * * * * 5300 * 4563 3774 * * * * 4251 3041 2488 * * 27 0 * * * * * * 4208 0 0 S 28 * 6036 1983 1975 * 4563 * * * * 5080 4246 * * 5052 3087 2286 * * * 28 0 * * * * * * 4208 0 0 H 29 3504 * 3891 1961 * 4266 4688 * * * * 3326 * 2098 * 2613 * * * * 29 0 * * * * * * 4208 0 0 E 30 * * * 745 * * 3881 * * * * * * 2658 * 4103 3409 * * 5344 30 8 * 7498 * * * * 4208 0 0 K 31 * * * 5894 5297 * 5339 * 1115 3122 * * * * 1773 * 3966 * * * 31 0 * * * * * 0 4210 0 1000 L 32 * * * * 4424 * * 1382 * 3289 5569 * * * * * 5189 1255 * * 32 0 * * * * * 0 4210 0 1000 P 33 4912 * * 3480 * * 5429 * 5596 * * * 721 3722 * 3313 4314 * * * 33 0 * * * * * 0 4210 0 1000 V 34 5511 749 * * * * * * * 4816 * * * * * 4199 * 1771 * * 34 0 * * * * * 0 4210 0 1000 R 35 * * * 5429 * * * 5856 2278 5297 * 5847 * 4474 2012 * 1662 3298 * * 35 0 * * * * * 0 4210 0 1000 T 36 5583 * * * 655 * * 5429 * 3817 * * * * * 5777 2992 3241 * * 36 0 * * * * * 0 4210 0 1000 E 37 5569 * 5596 2258 5847 * 4318 6041 2894 3290 * 2519 * 3440 4117 5341 4204 5235 * * 37 0 * * * * * 0 4210 0 1000 T 38 * * * * 4683 * 4062 3489 3825 3295 4327 * * 5005 5583 3624 2947 2135 * 3330 38 0 * * * * * 0 4210 0 1000 A 39 4489 * 2698 2546 * 3967 * * 4006 4304 * 4802 3104 5384 5454 2673 3357 * * * 39 0 * * * * * 0 4210 0 1000 M 40 3231 4103 * * 4374 * * 2199 * 2045 4572 * * * * 5133 * 1963 * * 40 0 * * * * * 0 4210 0 1000 P 41 * * * 4576 4242 * 4017 * 3768 3861 * 4400 1418 4551 4560 4374 5135 * * 3083 41 37 * 5297 * * * 0 4210 0 1000 R 42 5029 * 4412 * * 1543 * * 3564 5199 * 2590 * * 2744 3604 4953 * * 4735 42 29 * 5670 * * * 0 4188 0 1217 L 43 * 5525 * * 4539 4816 * 5747 * 529 3338 * * * * * 5172 4029 * * 43 41 5150 * 4248 78 318 2337 4179 1000 1752 G 44 4129 * * * * 128 * * * * * * * 5164 * * * * * * 44 105 * 3831 * * * 0 4210 0 1000 A 45 4406 * * * 1684 * 3370 5369 3463 5051 * * * 4039 3900 * * 5146 * 2037 45 28 * 5716 * * 130 3541 4031 0 2025 F 46 * * 4197 5090 3296 * * 4823 5166 705 * * * * * 5219 5282 4809 * 4333 46 316 2517 5507 2031 405 556 1644 4209 2672 1192 F 47 4368 5435 2256 1670 4581 4574 * 3317 * 2732 5153 * * * * 5815 * 5369 * * 47 315 2350 * 2533 274 505 1759 4124 3046 1196 D 48 * * 1579 3417 * 2874 5133 * * * * 3093 2570 * * 3346 5454 * * * 48 315 2349 * 2377 309 * 0 4210 3000 1000 N 49 * * 3571 2697 * 4624 4891 * 4066 * * 2515 2289 3461 2815 6035 * * * * 49 305 2390 * 2225 347 0 * 4210 2844 1000 A 50 5477 * 1079 3615 * * 4264 * * * 5795 4006 2430 * * 3460 6180 * * * 50 218 2836 * 3343 150 * * 4212 2407 0 V 51 5308 * * * * * * 1556 * 1303 5123 * * * * * 4953 2571 * * 51 53 4780 * 2613 258 * * 4212 1572 0 P 52 4098 * 4028 2614 * 5985 3532 6445 3120 * * 5875 2124 2575 4505 6199 5923 * * * 52 0 * * * * * * 4212 0 0 Q 53 3290 * * 2343 * * * * 2708 * 5154 5605 3947 2827 3983 3345 5795 3138 * * 53 25 5875 * 2322 322 * * 4212 1000 0 G 54 * * 4294 * * 586 4632 * 5564 4262 * 2562 * * * * * * * * 54 0 * * * * * * 4212 0 0 S 55 3665 * * 5154 5361 * 4436 * 5209 * * * * 5605 3574 1460 1778 5265 * 6674 55 0 * * * * * * 4212 0 0 K 56 6332 * * 5154 * * * * 1032 * * 5209 6083 5605 2498 * 3041 3190 * * 56 0 * * * * * * 4212 0 0 L 57 4271 * * * * * * 2856 * 1986 2878 * * * * 6674 * 1280 * * 57 0 * * * * * * 4212 0 0 E 58 5351 * 2678 934 * 6674 5564 * 4436 * * 3478 * 4932 * * 3909 * * 5068 58 0 * * * * * * 4212 0 0 L 59 4825 * * * * * * * * 436 4667 * * * * * * 2427 * * 59 0 * * * * * * 4212 0 0 P 60 * * * * * * * * * * * * 0 * * * * * * * 60 0 * * * * * * 4212 0 0 L 61 * 5094 * * 2643 * 5842 4587 * 834 4794 * * * * * * 5209 * 2973 61 0 * * * * * * 4212 0 0 W 62 * * * * 4568 * * * * * * * * * * * * * 62 * 62 0 * * * * * * 4212 0 0 L 63 4262 * * * 5038 * * 5334 * 428 3228 * * * * * * * * 4544 63 0 * * * * * * 4114 0 0 A 64 399 * * * * 4848 * 4544 * * * * * * * 5827 * 2773 * * 64 0 * * * * * * 4114 0 0 K 65 4657 * 4147 2804 4157 5796 3495 4850 2337 3740 * * 5078 5461 3663 3958 5892 3678 * * 65 0 * * * * * * 4092 0 0 G 66 2316 * * 2452 4428 4064 * 3049 4055 4641 3130 * 4371 * 4993 4872 5461 4709 * * 66 0 * * * * * * 4092 0 0 L 67 5435 * * * * * * * * 218 3654 * * * * * * 4723 * * 67 0 * * * * * * 4088 0 0 F 68 1368 2875 * * 3593 4593 * * * 2585 * * * * * 2432 * * * * 68 107 * 3800 * * * * 3953 0 0 D 69 * * 4009 2590 * 4999 4189 4802 4689 3685 * * * 4702 2695 2618 2809 4841 * * 69 0 * * * * * 0 4004 0 1799 N 70 * * * * * 4190 3723 * * * 4667 2084 3153 3586 1492 4536 * * * * 70 195 * 2983 * * 0 * 3975 0 1799 K 71 * * * 3319 * * * * 2311 * * * * 2231 1202 4302 * * * * 71 262 3179 4161 1585 585 * 0 3547 1059 1712 R 72 * * * * * * * 2194 3586 * * * * 2938 972 4111 * * * * 72 0 * * * * 537 1686 3314 0 1991 R 73 * * 5344 * * 4190 * * 2076 3846 * 2491 3153 2603 2653 * * * * * 73 0 * * * * 0 * 3589 0 1000 I 74 * * 4280 * 2150 * * 947 * 2863 * * * * * * * * * 3895 74 0 * * * * * * 3650 0 0 L 75 3901 * * * * * * 4018 * 2278 * * * * * * * 588 * * 75 0 * * * * * * 3650 0 0 S 76 * * * 5404 * * * * 3895 * * * * * * 647 1887 * * * 76 0 * * * * * * 3650 0 0 V 77 4267 4135 * * * * * 2273 * * * * * * * * * 547 * * 77 0 * * * * * * 3650 0 0 E 78 * * 2792 225 * * * * * * * * * * * * * * * * 78 0 * * 0 * * * 3253 0 0 //