HHsearch 1.5 NAME d2e45a1 FAM FILE d2e45a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2e45a1.a3m DATE Wed Mar 10 14:15:20 2010 LENG 50 match states, 50 columns in multiple alignment FILT 26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.4 EVD 0.4548 1.5506 SEQ >ss_dssp CCTTCSSTTCSCSCCCTTEEEEEETTEEEEEETTTCCEESSCCCCCCTTC >sa_dssp EEEEEEEDEDECEECDECBCDDEDEECCBBDCEEEDEEDEEECEEEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCC >ss_conf 95347232236899889720356577747898268883314887456888 >Consensus dxxwxxxsxexxxdLPPgWxxxxDxxGxYYwHixtgxtQwepPxxxxpxx >d2e45a1 DSFWNPNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQ >UniRef50_O95704(17-59:486) Amyloid beta A4 precursor protein-binding family B member 3 n=56 Tax=Euteleostomi RepID=APBB3_HUMAN E=8e-17 s/c=2.05 id=45% cov=88% DDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRP------- >UniRef50_Q4T309(386-436:916) Chromosome undetermined SCAF10141, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4T309_TETNG E=9e-18 s/c=1.79 id=56% cov=100% -DIWSEQSFQTDPDLPPGWKKITDMAGIYYWHIPTGTTQWERPAThpAQPGQ >UniRef50_Q6PCY9(564-600:737) Setd2 protein (Fragment) n=22 Tax=cellular organisms RepID=Q6PCY9_MOUSE E=3e-08 s/c=1.61 id=43% cov=74% --------------LPPNWKTARDPEGkIYYYHVITRQTQWDPPTWESPGD >UniRef50_UPI00017933BE(201-245:679) PREDICTED: similar to mammalian FE65 Homolog family member (feh-1) n=1 Tax=Acyrthosiphon pisum RepID=UPI00017933BE E=4e-14 s/c=1.76 id=43% cov=92% -----NNSHECTDELPAGWEKHEDNDGPYYWHIKSGTIQREPPEYSGKNE >UniRef50_Q4RZC7(23-69:564) Chromosome 1 SCAF14944, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RZC7_TETNG E=1e-09 s/c=1.37 id=51% cov=86% -DVWG------DGDLPPGWREISDSSEVYFWHVPTGTTQYHRPvapgnQHASPN- >UniRef50_UPI0000E4633B(353-401:848) PREDICTED: similar to amyloid beta A4 precursor protein-binding, family B, member 2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4633B E=8e-12 s/c=1.46 id=59% cov=88% -------ALTKPTTLPPGWREVADAHGTYYWHVPTGTTQWSPPsptdsqGSASPPK >UniRef50_Q4SQ21(46-95:464) Chromosome 7 SCAF14536, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SQ21_TETNG E=2e-15 s/c=1.67 id=45% cov=102% DNIWTDQNLLLDPDLPSGWRTIKDSAGTYYWHVPTGATQWQHPSLSRTPQ >UniRef50_B0WG67(2000-2047:2379) Huntingtin interacting protein n=2 Tax=Coelomata RepID=B0WG67_CULQU E=3e-11 s/c=1.45 id=38% cov=94% ----NPDDYELPPmDLPPLWKFAIDERGrLYYYHVKLRVPQWEPPKKVNPNR >UniRef50_B3RRG4(799-837:1004) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RRG4_TRIAD E=0.0002 s/c=1.21 id=32% cov=74% -------SLKDVPPLPPDWRAAIDQQGrIYYYNIHTRVSQWQQP------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 325 2310 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1703 0 0 S 2 * * 864 * * * * * * * * 2193 * * * 2109 * * * * 2 0 * * * * * * 1864 0 0 F 3 * * * * 1838 * * 1132 * 2856 * * * * * * * 2991 * * 3 0 * * * * * * 1872 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 1872 0 0 N 5 * * 3736 * * 2231 * * * * * 1439 * * * 2359 2754 * * * 5 162 * 3236 * * * * 2181 0 0 P 6 * * 1391 3882 * * * * * * * 2871 1847 * 3984 3775 * * * * 6 0 * * * * * 0 2289 0 1000 N 7 * * 3230 3230 * * 2154 * * * * 1917 * 2157 * 3775 * * * * 7 0 * * * * * 0 2289 0 1000 A 8 2442 * 2580 * * * * * * * * 3877 * * * 784 * * * * 8 0 * * * * * 0 2409 0 1000 F 9 * * * * 1952 * 3051 * * 1140 * * * * * * * * * 2580 9 70 * 4390 * * * 0 2409 0 1000 E 10 * * * 980 * * * * 3061 3898 * * * 2107 * * 3756 * * * 10 0 * * * * * 0 2490 0 1326 T 11 3484 3158 3061 * * * * * 3756 1826 * * * * * * 1994 3801 * * 11 0 * * * * 0 * 2490 0 1326 D 12 * * 1095 4031 * * * * * * * * 2329 * * 3593 3787 3103 * * 12 0 * * * * * * 2543 0 0 S 13 4196 * 3870 4076 * 3562 * * * * * * 906 * * 3665 3051 * * * 13 197 2972 * 0 * * * 2529 1063 0 D 14 * * 818 4344 * 4414 * * 2721 * * 4436 3429 * * * 4443 * * * 14 0 * * * * * * 2502 0 0 L 15 * * * * * * * * * 0 * * * * * * * * * * 15 0 * * * * * * 2500 0 0 P 16 * * * * * * * * * * * * 0 * * * * * * * 16 0 * * * * * * 2500 0 0 A 17 3887 * * * * * * * * * * * 248 * * 3472 * * * * 17 0 * * * * * * 2500 0 0 G 18 * * 3939 * * 783 4048 * 4653 3548 * 3398 * * * * 4928 * * 4635 18 0 * * * * * * 2500 0 0 W 19 * * * * * * * * * * * * * * * * * * 0 * 19 0 * * * * * * 2500 0 0 M 20 * * * 2299 * * * * 1486 * 3537 * * * 1499 * * * * * 20 0 * * * * * * 2500 0 0 R 21 2817 * * 3136 2992 * * * 1780 * * * 4928 * 3164 * 2708 5060 * * 21 0 * * * * * * 2500 0 0 V 22 1255 * * * * * 2773 2119 * * * * * * * * * 2290 * * 22 0 * * * * * * 2500 0 0 Q 23 4794 * * 3247 * * 4925 2389 3758 * * 5115 * 3329 2428 3276 2801 * * * 23 0 * * * * * * 2500 0 0 D 24 * * 84 4137 * * * * * * * * * * * * * * * * 24 0 * * * * * * 2500 0 0 T 25 2950 * * 2992 * * * 4202 4881 * 5255 3809 2543 3291 * 2813 2806 * * * 25 0 * * * * * * 2500 0 0 S 26 2760 * 3809 2029 * 4881 4794 * 4653 * * * * 3234 2992 2609 5039 * * * 26 0 * * * * * * 2500 0 0 G 27 * * * 3685 * 117 * * * * * * * * * * * * * * 27 889 1121 * 0 * * * 2500 1988 0 T 28 * * * * * * * 1900 * 2992 * * 3247 * * 4607 2028 2218 * * 28 84 4137 * 0 * * * 2500 1000 0 Y 29 * * * * 4137 * * * * * * * * * * * * * * 84 29 0 * * * * * * 2500 0 0 Y 30 * * * * 3685 * * * * * * * * * * * * * * 117 30 0 * * * * * * 2500 0 0 W 31 * * * * 4386 * * * * * * * * * * * * * 783 1430 31 0 * * * * * * 2500 0 0 H 32 * * * * * * 97 * * * * 3939 * * * * * * * * 32 0 * * * * * * 2500 0 0 I 33 4757 * * * * * * 1010 * * * * * * * * 4048 1300 * * 33 0 * * * * * * 2500 0 0 P 34 * * 4607 * * * 3939 3499 1885 * * * 1202 * * * * 3325 * * 34 0 * * * * * * 2500 0 0 T 35 * * 4386 3644 * * * * * 4732 * * * * * 2480 610 * * * 35 0 * * * * * * 2500 0 0 G 36 * * * * * 783 * * * * * * * * 1255 * * * * * 36 48 4928 * 3170 170 * * 2500 1000 0 T 37 3988 * * 4048 * * * 4635 * * * * * 2969 * 4925 1043 2393 * * 37 0 * * * * * * 2500 0 0 T 38 * * * * * * * 2773 * * * * 2992 * * 3252 683 * * * 38 0 * * * * * * 2500 0 0 Q 39 * * * * * * * * * * * * * 90 * 4048 * * * * 39 0 * * * * * * 2500 0 0 W 40 * * * * * * * * * * * * * * 2773 * * * 366 3685 40 0 * * * * * * 2500 0 0 E 41 * * 2029 1193 * * 3685 * * * * * * 2295 * 4794 * * * * 41 0 * * * * * * 2500 0 0 P 42 * * * * * * 3953 * * * * * 558 3939 2387 * * * * * 42 0 * * * * * * 2500 0 0 P 43 * * * * * * * * * * * * 0 * * * * * * * 43 350 2215 * 2434 295 * * 2500 1293 0 G 44 4090 * * 2314 * 2855 * * 2881 * * * * 2454 3826 2968 3553 * * * 44 0 * * * * * * 2377 0 0 R 45 * * * * * * 3233 * 2023 3578 * * * * 3662 2937 3824 * 3372 2418 45 106 3824 * 1000 1000 * * 2562 1000 0 A 46 1371 * * 3372 * * * * * * * 3619 3480 * * 1885 * 3736 * * 46 0 * * * * * * 2562 0 0 S 47 3652 * * * * 2243 * * * * * 2621 * 3622 3453 1419 * * * * 47 0 * * * * * * 2561 0 0 P 48 3438 * * 3652 * * * * 3070 * * * 695 * * * 3453 * * * 48 0 * * * * * * 2561 0 0 S 49 * * * 3652 * 2455 * * * * * 1345 2577 * * 2499 * * * * 49 0 * * * * * * 2561 0 0 Q 50 * * 3023 2084 * * * * 3328 * * * * 1694 2105 * * * * * 50 0 * * 0 * * * 2491 0 0 //