HHsearch 1.5 NAME d2do3a1 FAM FILE d2do3a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2do3a1.a3m DATE Mon Mar 8 22:39:15 2010 LENG 62 match states, 62 columns in multiple alignment FILT 45 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4445 1.5685 SEQ >ss_dssp CCCCCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEECTTSEEESCC >sa_dssp EEEEEEEEEECDEEDCACADCDECEECDBEADEECEECBCADAEEEEEEBEBDDECBDCEEE >ss_pred CCCHHHHEEECCCCCEEEEECCEECCCEEEEEEECCCEEEEECCCCCCEEEEEHHHHHHCCC >ss_conf 98765603302589759996122559617899972999999838987789998678764039 >Consensus exxxxxLrKxFxxGdhVkVixGxxxgetGlVVxvxxxxvxvxsDxtxxEixVxxxdLxxsxe >d2do3a1 EFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE >UniRef50_B2WAZ3(497-559:1020) Transcription elongation factor spt5 n=3 Tax=Pleosporineae RepID=B2WAZ3_PYRTR E=1e-16 s/c=1.38 id=37% cov=102% DAPVKTLRKLFRDGDHVKVIGGsKYVDEVGLVTRIRDDKITLLCDSTQQEITVFSKDLKRAAD >UniRef50_B8BVN2(600-671:1158) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BVN2_THAPS E=8e-11 s/c=0.95 id=37% cov=102% EFLISQIRKFIAVGAHVKVMDGRYANETGVVVAVEnmdgeegsdfDCTAVVLTDMTHKEISVRTSQLQESAE >UniRef50_C5KNI1(544-604:1267) Histidyl-tRNA synthetase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KNI1_9ALVE E=5e-12 s/c=1.18 id=32% cov=100% -VAIKDLSKHFDMGDHVKILDGASAGDTGTVIKLDGSVATILTDNEPREVKCQSSNLKLTSD >UniRef50_O80770(456-516:990) Putative transcription elongation factor SPT5 homolog 2 n=2 Tax=Arabidopsis thaliana RepID=SPT52_ARATH E=7e-15 s/c=1.34 id=37% cov=100% -VNGRELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLIILSDTTKEHICVFADHVAKSAE >UniRef50_A4RZ64(363-423:938) Predicted protein n=2 Tax=Ostreococcus RepID=A4RZ64_OSTLU E=2e-15 s/c=1.37 id=37% cov=100% -FKSEQLRKHFKTGSTVRVLHGKHEGVVGMVVKVERDVAHIFSTVSNEEFQVFMHDLADSEE >UniRef50_Q22N16(468-528:778) KOW motif family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22N16_TETTH E=2e-10 s/c=1.09 id=35% cov=100% EYPLKQLVKYFEDGSRVKVISGTSEGITGTVLSTKGDVCEVFTDNNNT-IEVRTKDLAITGE >UniRef50_D2VQ68(398-461:963) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VQ68_NAEGR E=1e-09 s/c=1.01 id=27% cov=100% QFTSNQLQKHFSVGQFCRVVGtGKWEGESGYIVRVseDDDSIVLYNEVRRCDMNVYSNEIQETT- >UniRef50_A5K1V0(583-644:1213) Trancription factor, putative n=3 Tax=Plasmodium RepID=A5K1V0_PLAVI E=1e-08 s/c=0.98 id=37% cov=97% -FLPSDVTKYFLEGDNVTVINGIHKGKSGLISLLDykENVALIFSPSLNTEFRSSIQDLSAC-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 1790 683 * * * * * * * * * 3510 * * * * * * 1 0 * * * * * * 3482 0 0 F 2 4392 * * * 1046 * * 5074 * 4532 * * * * * * * 1469 * 4886 2 0 * * * * * * 4002 0 0 P 3 4937 * 4102 * * * * * 3531 3018 5838 3560 1079 4434 * * 3696 * * * 3 0 * * * * * * 4042 0 0 A 4 2575 * * 4036 4408 4270 * 3348 4627 3451 5099 5879 3110 * 5104 2879 3854 4438 * * 4 0 * * * * * * 4042 0 0 Q 5 * * 5169 2925 * 5459 4318 * 2284 5256 * 3068 * 6279 2701 2295 * 5134 * 5794 5 0 * * * * * * 4172 0 0 E 6 * * 2090 2270 * 3491 * * * * * 5189 * 2291 * 2474 4128 * * * 6 0 * * * * * * 4172 0 0 L 7 * * * * * * * 5053 * 301 * * * * * * * 2659 * * 7 0 * * * * * * 4199 0 0 R 8 5167 4044 * 5885 * * * 5089 6122 * 4293 * * 3598 826 3847 4212 5064 * * 8 0 * * * * * * 4199 0 0 K 9 * * * * * * * 4635 59 * * * * * * * * * * * 9 0 * * * * * * 4187 0 0 Y 10 * 5598 5292 * 3810 * 2302 4206 4883 4166 * 4151 * * 3311 4702 * 5364 * 1661 10 0 * * * * * * 4187 0 0 F 11 * * * * 285 * * 3673 * 3758 * * * * * * * 5200 * * 11 0 * * * * * * 4187 0 0 K 12 3728 * 4431 3150 * * * 5279 1654 5327 * 3020 5443 5359 3243 3470 * 5028 * * 12 0 * * * * * * 4187 0 0 M 13 5803 * 4341 2472 * * 4921 3771 * 5120 4264 * 2916 5371 * * 3796 1570 * * 13 0 * * * * * * 4187 0 0 G 14 4914 * * * * 49 * * * * * * * * * * * * * * 14 0 * * * * * * 4187 0 0 D 15 3624 * 529 5642 * * * * * * * 4917 * 3872 * 3727 5120 * * * 15 0 * * * * * * 4187 0 0 H 16 5286 * * 5818 3943 * 668 * 5292 * * 3242 * * 3465 * 5356 * * 5963 16 0 * * * * * * 4187 0 0 V 17 4978 4506 * * * * * 4519 * * * * * * * * * 183 * * 17 0 * * * * * * 4187 0 0 K 18 * * * * * * * 5120 873 * * * * * 1656 * 3646 5142 * * 18 0 * * * * * * 4187 0 0 V 19 4383 5319 * * * * * 3412 * * * * * * * * * 263 * * 19 0 * * * * * * 4187 0 0 I 20 * * * 5142 * * * 1241 * 2262 4436 * * 4914 * 5120 3492 2805 * * 20 0 * * * * * * 4187 0 0 A 21 2858 * 2799 4541 * 2336 4339 * 5873 5818 * 3646 * * 4024 1990 * * * * 21 65 4506 * 0 * * * 4187 1000 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 102 3878 * 0 * * * 4187 1513 0 R 23 5247 * 4531 3535 * * * 3831 2202 5279 3890 4868 * 5364 1973 4831 3860 4434 * * 23 0 * * * * * * 4187 0 0 F 24 * * * * 3485 * 1394 * * * * 3774 * 5598 5120 4254 * * 4506 1684 24 0 * * * * * * 4187 0 0 E 25 2375 * 5852 1444 * 5364 * * 3297 5885 * * * 3512 4211 4470 4473 4397 * * 25 0 * * * * * * 4187 0 0 G 26 * * 2342 * * 545 * * * * * 3093 * * * * * * * * 26 0 * * * * * * 4187 0 0 D 27 3834 * 2247 1157 5286 5575 5963 5261 3620 * * * * 4914 * * * 3885 * * 27 0 * * * * * * 4187 0 0 T 28 4204 * * * * * * 5286 * 6049 * * * * * 2350 705 3390 * * 28 0 * * * * * * 4187 0 0 G 29 * * * * * 0 * * * * * * * * * * * * * * 29 0 * * * * * * 4187 0 0 L 30 * * * * * * * 4125 * 1293 2106 * * * * * 2871 4244 3860 4506 30 36 5359 * 1000 1000 * * 4187 1000 0 I 31 * * * * * * * 1425 * * * * * * * * * 672 * * 31 0 * * * * * * 4187 0 0 V 32 * * * 4635 * * * 3571 * 3242 * * * * * 4303 5425 523 * * 32 0 * * * * * * 4187 0 0 R 33 3056 * 5359 3677 * 5885 * * 2064 4303 4063 3357 * 4913 1979 5261 * * * * 33 0 * * * * * * 4187 0 0 V 34 * * * * 4365 5292 * 2450 5286 3875 * * * 5818 * 4131 5261 867 * * 34 112 3743 * 1000 1000 * * 4187 1644 0 E 35 * * 1692 1627 * * * * 2755 * * 3734 * 4946 5425 4481 * 6105 5142 * 35 182 3635 4727 2275 334 * * 4187 1757 0 E 36 * * 1613 3040 * 2000 * * 4089 * * 3372 4588 3656 5309 * * * * * 36 36 5352 * 2322 322 * 0 4158 1000 1487 N 37 * 5017 1227 5267 * 5051 4376 * 5332 5827 * 2619 * 4893 4944 2995 4612 * * * 37 40 5177 * 2000 415 * 0 4158 1000 1487 F 38 * * * 3719 4750 * * 4330 4345 4313 4703 * * 4387 3153 3138 3499 1786 * 4409 38 0 * * * * * 0 4158 0 1487 V 39 1712 4265 * * * * * 3116 * 4376 * * * * * * 4591 1192 * * 39 36 5324 * 0 * * 0 4158 1000 1487 I 40 * 4985 * 4217 4536 * 5240 2795 * 3137 * * * * * 5779 1709 2259 * 4205 40 0 * * * * * 0 4156 0 1487 L 41 * * * * 2956 * * 2286 * 1625 * * * * * * * 1548 * * 41 0 * * * * * 0 4156 0 1487 F 42 * * * * 1334 * * 4272 * 1307 4306 * * * * * * 4279 * 4461 42 0 * * * * 848 1170 4156 0 1487 S 43 * 5408 * * * * * 4897 * * * 3295 5118 * * 766 2347 5182 * * 43 0 * * * * * 0 4181 0 1000 D 44 * * 385 4490 * * * * * * * 5300 3200 * * * 4178 * * * 44 43 5094 * 1000 1000 * 0 4181 1000 1000 L 45 * * * * * * 5346 * 3882 2459 4454 4208 * 2477 4086 3284 2712 2919 * * 45 0 * * * * * 0 4181 0 1000 T 46 4106 * * 5202 * 4762 * * 3929 3876 5182 4496 * * 4490 3381 911 * * * 46 42 5118 * 1000 1000 * 0 4181 1000 1000 M 47 5182 * * 5602 5835 3503 5057 * 2376 5856 2468 2528 5202 5408 3522 3129 * * * * 47 0 * * * * 0 * 4181 0 1000 H 48 3517 4495 * 2269 * * 3783 * 3270 * 6033 4277 * 3237 2854 4856 2849 * * * 48 39 * 5237 * * * * 4179 0 0 E 49 * * 3632 479 * * 4169 * * * * * * 4063 * 4596 4477 * * * 49 0 * * * * 0 * 4149 0 1000 L 50 * * * * 2915 * * 1499 * 2048 3862 * * * * * * 2300 * * 50 0 * * * * * * 4179 0 0 K 51 * 4019 * 3069 * 5203 * 5307 1951 5306 * 4495 * 4248 3060 3843 2348 * * * 51 0 * * * * * * 4179 0 0 V 52 * 4237 * * * * * 5081 * * * * * * * 3469 * 274 * * 52 0 * * * * * * 4179 0 0 L 53 5355 5100 * 5124 1455 * * * 4061 3496 * * * 5210 3022 2748 4030 * * 4495 53 0 * * * * * * 4179 0 0 P 54 2156 * * * 5826 * * 4200 * 4996 5279 * 2533 4598 * 1693 3661 4503 * * 54 0 * * * * * * 4251 0 0 R 55 * * 4012 4856 * * 3721 4089 2178 * * 2567 * 3754 2394 3122 * * * * 55 0 * * * * * * 4164 0 0 D 56 * * 667 4423 * * 3006 * * * * 3364 * 4193 * * * * * 4400 56 0 * * * * * * 4164 0 0 L 57 * * * * * * * 3452 * 276 * * * * * * * 3595 * * 57 0 * * * * * * 4086 0 0 Q 58 3105 * * 3584 * 4679 * 4336 3548 * * * * 2116 2505 2952 5079 4041 * * 58 0 * * * * * * 4086 0 0 L 59 5018 * 4112 1550 * * * 3795 2706 1995 * 4477 * 5561 5177 * * * * * 59 0 * * * * * * 4086 0 0 C 60 2383 2329 * * * * * * * * * * * * * 1366 2598 5369 4965 * 60 0 * * * * * * 4018 0 0 S 61 1689 * * 3485 * 4543 * 4386 * * * * 5545 4765 * 1687 2826 * * * 61 0 * * * * * * 3803 0 0 E 62 * * 1011 989 * * * * * * * * * * * * * * * * 62 0 * * 0 * * * 3669 0 0 //