HHsearch 1.5
NAME  d2dlqa4
FAM   
FILE  d2dlqa4
COM   /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2dlqa4.a3m 
DATE  Tue Mar  9 00:24:05 2010
LENG  27 match states, 27 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.5041  4.0217 
SEQ
>ss_dssp
CCCTTTCCCCSSHHHHHHHHHHHSSCC
>sa_dssp
DDAEEDEEECEDDEDBDDCDEEDEDEE
>ss_pred
CCCCCHHHHHHHHEEHEEECCCCCCCC
>ss_conf
937510033300100212131123689
>Consensus
vxcpxcxkxfxskyylkvhnrxhtgex
>d2dlqa4
VECPTCHKKFLSKYYLKVHNRKHTGEK
>UniRef50_Q4S680(313-339:673) Chromosome 9 SCAF14729, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4S680_TETNG  E=0.0001 s/c=1.77 id=71% cov=104%
VQCPICDKSFKSKYYLKVHNRRHTGER
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
V 1    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	1
       0	*	*	*	*	*	*	1197	0	0	

E 2    *	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1197	0	0	

C 3    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1197	0	0	

P 4    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1197	0	0	

T 5    *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	1000	*	*	*	5
       0	*	*	*	*	*	*	1197	0	0	

C 6    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1197	0	0	

H 7    *	*	1000	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1197	0	0	

K 8    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1197	0	0	

K 9    *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	9
       0	*	*	*	*	*	*	1197	0	0	

F 10   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1197	0	0	

L 11   *	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1197	0	0	

S 12   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	12
       0	*	*	*	*	*	*	1197	0	0	

K 13   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1197	0	0	

Y 14   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	14
       0	*	*	*	*	*	*	1197	0	0	

Y 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	15
       0	*	*	*	*	*	*	1197	0	0	

L 16   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1197	0	0	

K 17   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1197	0	0	

V 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	18
       0	*	*	*	*	*	*	1197	0	0	

H 19   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1197	0	0	

N 20   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1197	0	0	

R 21   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	21
       0	*	*	*	*	*	*	1197	0	0	

K 22   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	1000	*	*	*	*	*	22
       0	*	*	*	*	*	*	1197	0	0	

H 23   *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1197	0	0	

T 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	24
       0	*	*	*	*	*	*	1197	0	0	

G 25   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1197	0	0	

E 26   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1197	0	0	

K 27   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	1000	*	*	*	*	*	27
       0	*	*	0	*	*	*	1197	0	0	

//