HHsearch 1.5 NAME d2ct1a2 FAM FILE d2ct1a2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2ct1a2.a3m DATE Tue Mar 9 01:02:00 2010 LENG 36 match states, 36 columns in multiple alignment FILT 100 out of 10796 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.5104 2.8502 SEQ >ss_dssp CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSCC >sa_dssp EEEEEEDEDDAEDDECEBEECCEBEDCBEEEBEEEE >ss_pred CCCCCCCCEECCCCCCEEEEHHHCCEEEEEECCCCC >ss_conf 967878814814128788331331101331048869 >Consensus RxHtgekPyxCxxCxkxFxxxxxLxxHxxxhhxxel >d2ct1a2 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV >UniRef50_Q9VS55(543-576:818) CTCF n=14 Tax=Drosophila RepID=Q9VS55_DROME E=0.0002 s/c=1.39 id=31% cov=97% -IHLDEKPFHCDQCPQAFRQRQLLRRHMNLVHNEE- >UniRef50_C3ZR92(75-110:2669) Putative uncharacterized protein n=37 Tax=Branchiostoma floridae RepID=C3ZR92_BRAFL E=2e-05 s/c=1.39 id=30% cov=103% RTHTGEKPYKCDQCDYSASKKCNLDYHSAKHTGDKL >UniRef50_UPI0000D56782(154-190:1493) PREDICTED: similar to schnurri CG7734-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56782 E=0.0001 s/c=1.29 id=27% cov=103% RAHTNERPFPCNSCGFSFKTRSNLYKHCRsRTHANRV >UniRef50_Q4SKK4(481-513:759) Chromosome undetermined SCAF14565, whole genome shotgun sequence n=4 Tax=Tetraodontidae RepID=Q4SKK4_TETNG E=4e-05 s/c=1.50 id=26% cov=94% -SHTNSRPYVCPVCRKAYAHSGSLSTHTKLHHSD-- >UniRef50_UPI0000D569C8(344-378:534) PREDICTED: similar to lost on transformation protein 1 n=1 Tax=Tribolium castaneum RepID=UPI0000D569C8 E=0.0001 s/c=1.37 id=31% cov=100% -VHTGMRDFLCQFCPQRFGRKDHLVRHIKKSHSKNV >UniRef50_UPI0000F2BB2B(503-536:648) PREDICTED: similar to Zinc finger protein 72 n=1 Tax=Monodelphis domestica RepID=UPI0000F2BB2B E=9e-05 s/c=1.41 id=31% cov=97% RIRVGPKAYKCKECGETFSDCSTCIRHQ-RVHTGE- >UniRef50_C3YKU4(595-627:801) Putative uncharacterized protein n=3 Tax=Branchiostoma floridae RepID=C3YKU4_BRAFL E=4e-06 s/c=1.58 id=32% cov=94% -THSKVQPHMCSECGKGFRQAGNLQVHMRTHSGE-- >UniRef50_B4MLL9(488-523:784) GK16907 n=2 Tax=Drosophila RepID=B4MLL9_DROWI E=0.0009 s/c=1.24 id=32% cov=103% RSHTGEKTSECKICGKIFLQEKSLTKHLKTHEKREL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * * * * * * * 0 * * * * * 1 0 * * * * * * 5156 0 0 T 2 6070 * * * * * * 1750 5201 4233 5962 * * 6243 * 2349 2034 2860 * * 2 0 * * * * * * 5613 0 0 H 3 * * * * * * 36 * * * * 5355 * * * * * * * * 3 0 * * * * * * 5676 0 0 S 4 4897 * * * 6542 * * 5147 5160 3780 6333 6529 * 5111 5015 2533 809 * * * 4 16 6460 * 1000 1000 * * 5678 1000 0 G 5 3700 * 4442 3452 * 957 * * 3649 6431 * 3334 * 4966 4730 * 6601 * * * 5 0 * * * * * * 5671 0 0 E 6 5643 * 2773 830 5238 6502 5604 5596 5050 4008 * * * 6590 4820 * * 4206 * * 6 0 * * * * * * 5671 0 0 K 7 * * * * 5791 * 6067 * 973 4992 5720 5385 * 5639 1793 6540 5050 5604 * 6256 7 0 * * * * * * 5671 0 0 P 8 6525 * 4993 * * * 5986 * 4785 5458 * 5655 427 5821 3652 * 5513 * * * 8 0 * * * * * * 5668 0 0 Y 9 * * * 6413 1336 * 3101 6561 * * 6322 * * * * 6299 * 6460 * 1223 9 0 * * * * * * 5668 0 0 E 10 4367 * * 3512 * 6682 4290 5280 1963 5616 6465 4413 5546 3702 3110 3695 3668 3793 * * 10 0 * * * * * * 5668 0 0 C 11 * 41 * * * 5156 * * * * * * * * * * * * * * 11 0 * * * * * * 5668 0 0 Y 12 4807 6347 3111 3618 * 6679 4331 6068 2692 6505 6777 3900 2503 4027 4310 3691 4481 * * 5148 12 0 * * * * * * 5668 0 0 I 13 5159 * 5083 3027 4109 * 4363 3185 4272 3216 6884 * * 3540 5855 6590 4911 2561 * 3070 13 38 5251 * 1000 1000 * * 5668 1931 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 5668 0 0 H 15 5616 * 2643 4016 5245 1759 5251 * 5138 4407 * 3491 4288 5476 4168 3530 5835 * * 6401 15 0 * * * * * * 5668 0 0 A 16 4498 * * 5764 4885 * 6041 * 950 6486 4646 5986 * 4298 2652 5563 6876 * * 3960 16 0 * * * * * * 5668 0 0 R 17 2546 4112 6846 6801 * 3799 * 5728 3352 * 5408 5708 6401 5000 2660 2485 3135 5156 * * 17 0 * * * * * * 5668 0 0 F 18 6341 4802 * * 456 5657 5307 * * * * * * * * 5429 5107 6497 * 3125 18 17 6447 * 2000 415 * * 5668 1000 0 T 19 2505 6679 * * 6675 4481 4800 6937 3947 4934 5527 3867 4980 6276 3605 2577 2520 4798 * 5446 19 0 * * * * * * 5668 0 0 Q 20 5841 4757 4333 6446 6390 * 3845 * 4273 6874 * 5381 * 2516 1584 4206 3395 5475 * 4696 20 0 * * * * * * 5668 0 0 S 21 4112 * 6809 4813 * 4820 * * 2325 4459 5278 3845 4636 3898 2568 2613 4832 5249 5560 * 21 0 * * * * * * 5668 0 0 G 22 3122 5092 2540 6543 5300 3346 5148 6207 5115 * * 3319 6404 4961 * 1930 4787 5279 6615 * 22 0 * * * * * * 5668 0 0 T 23 6489 5657 4005 5236 6647 5246 2811 6083 4541 4834 * 2160 * 5361 5986 2224 4715 5552 6347 4083 23 0 * * * * * * 5668 0 0 M 24 * 4885 * 6447 4902 * 6276 * * 502 3796 * * * 4474 * * 4712 6428 4820 24 0 * * * * * * 5668 0 0 K 25 4325 * 6341 5161 6704 * 6390 4642 1858 5983 6525 3191 * 4509 2538 4172 3404 4580 * 5134 25 0 * * * * * * 5668 0 0 M 26 4892 * 5820 4368 6489 6068 6465 4321 2220 4538 5887 4726 * 4115 2311 4446 3609 4193 5657 4684 26 0 * * * * * * 5668 0 0 H 27 * * * * * * 0 * * * * * * * * * * * * * 27 33 * 5485 * * * * 5668 0 0 I 28 5737 5519 * 4896 3991 * 4972 3240 4741 2912 2490 * * 3438 3909 5447 4322 3221 * 4715 28 0 * * * * 0 * 5557 0 1516 L 29 4615 * 5391 6600 6870 5439 5365 5384 1652 3096 4511 5700 * 4454 2070 4974 6775 5487 * * 29 43 5728 6535 448 1906 * * 5668 1510 0 Q 30 4331 * * 5244 * 6035 * 2703 2802 6029 5402 5067 * 4454 2233 4260 2502 4946 * 5423 30 43 * 5089 * * 0 * 5562 0 1000 K 31 5768 4885 * * 4652 * 970 4353 3405 6178 4341 5456 * * 5180 5649 5150 3936 * 5207 31 0 * * * * 0 * 5547 0 1721 H 32 6228 * 6224 4522 * * 733 * 5796 6582 5921 5016 * 4916 4006 4044 3374 * * * 32 0 * * * * * * 5651 0 0 T 33 4504 * 6502 4093 * 2529 6176 6790 4121 5779 6529 4548 3580 * 4895 3318 1760 5506 * 5261 33 0 * * * * * * 5707 0 0 E 34 6297 * 3232 1805 * 2294 6064 * 3098 5999 * 4548 5812 3760 4064 4833 6148 * * * 34 0 * * * * * * 5699 0 0 N 35 * * 2562 1328 * * * * 2291 * * 2832 * 5209 4541 * 5828 * * * 35 0 * * * * * * 5564 0 0 V 36 * * * * * * * 5023 * 947 4331 * * * * * * 1320 * * 36 0 * * 0 * * * 4917 0 0 //