HHsearch 1.5 NAME d2cq2a1 FAM FILE d2cq2a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2cq2a1.a3m DATE Tue Mar 9 12:41:04 2010 LENG 101 match states, 101 columns in multiple alignment FILT 111 out of 3593 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.1 EVD 0.4295 0.4342 SEQ >ss_dssp CCSSHHHHHTCCCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC C >sa_dssp EECEEBEEDDCEDCEDCBDBAAAACAAEECCADEEDACDBADEBBECDCCDBBEECCBAAADAEDDECADEACEEACCDDBEAEEDEECDACABBAEECE D >ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHCCCEECCCCCCEEEEEEEEEEECC C >ss_conf 9620034257545689986599983689886899999999830241357530343774999973999999999731897900699876899998432113 9 >Consensus axxxlxkxxxvxxxxxPtxxlxVxxxgLxxxvtexxLxxxFxxxGxixxixxxxxkxxafVxfxxxxxAxxAxxxlxgxxxxxxxxxxixxxxxxxxxvx x >d2cq2a1 AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ W >UniRef50_Q6CU32(104-187:301) KLLA0C08019p n=1 Tax=Kluyveromyces lactis RepID=Q6CU32_KLULA E=2e-07 s/c=0.68 id=21% cov=75% -----------NISSDPYRTLFV--GRLHYAVDEVELQKSFVKYGDIESCRIVRDqdgksRGYGFVQFTSYEDSKQCFRELGVRKGIEIMGRT------- ------ >UniRef50_D2V9B8(391-474:482) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V9B8_NAEGR E=2e-06 s/c=0.63 id=21% cov=80% ---------------QPTHTLHISNVPFeKDEKGKEILTNIFSQFGEIEGLRVFRHndKPMALIKFKTITSAAEALATLHN-ETISGKHMKVAFSLNSV- ---- >UniRef50_A2ECD1(2-77:93) Putative uncharacterized protein n=2 Tax=Trichomonas vaginalis RepID=A2ECD1_TRIVA E=7e-10 s/c=0.85 id=15% cov=61% --------------------------------TEQTIKDAFVIFGDLADIKMKMDRNQALIEFNYESDAEAAIDNMDGAEIFGQ-----TIYCTFATK-- - >UniRef50_A7RG09(213-289:599) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RG09_NEMVE E=9e-06 s/c=0.67 id=19% cov=53% -------------------------GGLGPWISIPELEREFDRFGAIRRIDYRKGGDHAYILYDSLDAASVAAREMRG---------------------- - >UniRef50_UPI000179122C(100-187:270) THO complex 4 n=2 Tax=Nasonia vitripennis RepID=UPI000179122C E=1e-05 s/c=0.58 id=19% cov=83% -------------SSSDATKLIVSN--LDFGVTDSDILELFSEFGPLKHAgvhydRSGRSIGSADLLFERRADAIKAMKQYNGVPL-DGREMNIQLATSE IPGV-- >UniRef50_Q0J072(32-133:149) Os09g0527100 protein n=5 Tax=Oryza sativa RepID=Q0J072_ORYSJ E=2e-05 s/c=0.49 id=16% cov=94% ARYSVGMDSGIHGATR-TESRTLYVEGLPSNCTKREVAHIFRPFSGFREVRLVNKESrhagscnlLCFVDFSSPPEARAALETLQGYKFDEHDHESSNLR TQF------ >UniRef50_A8BKE6(348-436:663) Polyadenylate-binding protein, putative n=2 Tax=Giardia intestinalis RepID=A8BKE6_GIALA E=0.0001 s/c=0.53 id=18% cov=88% ---ILIVDEAVRATDTQRSKTVILCKNLPGDVDISEISQQFEQYGAVLRC-IQPCPGFAIVEMGAPQDARKAFNMLAFKRVG---KLKVPMFLEF----- - >UniRef50_Q4Q1B5(53-145:183) Pre-mRNA branch site protein p14, putative n=4 Tax=Trypanosomatidae RepID=Q4Q1B5_LEIMA E=0.0006 s/c=0.49 id=13% cov=90% --HVSPSNASVHAAAMPDERILLVTGIPSKQCTSEYLYSLFGAYGGIQQIRIgssSITKGCAIVVYEQCEAANNAVGALNEYALSKDRVLRVSVY----- ---- >UniRef50_O94432(165-239:474) Uncharacterized RNA-binding protein C660.15 n=2 Tax=Schizosaccharomyces RepID=YHKF_SCHPO E=0.001 s/c=0.59 id=17% cov=23% ---------------------------------------------------------FGFLTFKNPKCVNEVMskeHHLDGK------------------ ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 3825 0 0 K 2 * * 3452 3564 * * 3845 * 2414 * 3732 * * 2204 1864 * * * * * 2 0 * * * * * * 4493 0 0 H 3 * * * 4322 * * 1118 * 1849 * * * * * 3966 * * * * 2759 3 0 * * * * * * 5171 0 0 T 4 3114 * * * * * * 1848 * 4281 * * * * * 3832 1737 2434 * * 4 0 * * * * * * 5322 0 0 L 5 * * * * * * * 4488 3513 1065 4391 * * * * 4109 * 1814 * * 5 0 * * * * * * 5893 0 0 L 6 * 4946 * 4586 * 2536 5766 3687 4757 1302 * * 4586 3732 * 5386 4901 4617 * * 6 48 4920 * 1000 1000 * * 6308 1000 0 R 7 * * * * * * * * 980 * 3964 5007 * * 2312 2646 * 4766 * * 7 0 * * * * * * 6488 0 0 H 8 3468 * 2548 2271 3477 * 2091 * 4009 * 5013 4843 5601 * 5157 * * * * 5033 8 0 * * * * * * 6535 0 0 E 9 4968 * 2273 1650 * 4520 * 5156 5297 4395 5509 5306 * 5155 3548 5113 3207 * * * 9 85 4133 * 0 * * * 6729 1484 0 G 10 3143 * 2767 3151 * 1678 * * * * * 5230 3698 5501 3753 3434 5479 * * * 10 28 * 5680 * * * * 6787 0 0 I 11 4356 * * * * 5457 * 2165 3894 3130 5606 * * * 5987 4532 * 1170 * * 11 0 * * * * * 0 6879 0 1000 E 12 4769 * 3755 2976 * 4838 3954 * 4583 4722 * 2843 * 3273 5567 2412 4686 3750 * 5784 12 0 * * * * 0 * 7071 0 1000 T 13 2924 4938 * 4994 5810 4250 5959 3760 5889 6542 5682 3496 3693 * * 3053 2399 3276 5836 * 13 0 * * * * * * 7114 0 0 V 14 2842 5648 4443 4982 5873 * * * * 6082 * 4182 5844 3976 3716 2474 2563 2558 * * 14 0 * * * * * * 7207 0 0 S 15 3061 6041 2594 3713 * 4092 * * * 4578 6045 4261 * * 4006 2011 3004 * * 5614 15 65 * 4496 * * * * 7211 0 0 Y 16 5081 * 4716 2530 * * 4454 5735 4994 4605 5612 4194 4886 3046 3044 2792 4501 4898 5920 4935 16 113 5204 4379 1128 882 * 0 7164 1646 1777 A 17 4677 * 5883 4582 * 5767 * * 6169 * * 4092 558 5127 6204 4044 * 5089 * * 17 89 4061 * 1784 495 814 1213 7184 2440 3201 T 18 5272 6066 4126 6401 5902 4695 * 5964 4041 5602 5172 3727 6509 6060 6056 2751 1285 5473 * 6401 18 27 6577 6936 2000 415 * 0 7175 1000 1744 Q 19 6479 5115 4364 3902 * * 5114 6106 2084 * * 3399 3361 4861 2723 3187 3913 6518 * * 19 41 5170 * 1585 585 674 1422 7245 1663 2285 S 20 4069 3677 4307 * * 6101 4296 3323 4240 5013 * 2990 6339 * 5118 2550 2497 * * 4395 20 75 6275 4729 0 * * 0 7222 1000 1217 L 21 6348 6330 * * 5320 6295 5375 3569 5280 918 * 6156 * * 3981 * 3621 3328 * 5955 21 73 4805 6224 1396 690 0 * 7228 1946 2854 V 22 5746 5488 * * 2820 * 5235 3072 4051 3232 6284 5750 * * 4701 5033 4383 2076 4858 3554 22 16 * 6485 * * 0 * 7274 0 1000 V 23 * * * * 6132 6097 * 1577 * 2524 * * * * * * * 1160 * 6103 23 132 * 3520 * * * 0 7315 0 1000 A 24 3335 2874 * * 2939 3118 6287 5028 4685 4036 * 5788 * 5997 * 3806 4175 4090 * 2678 24 22 * 6029 * * * 0 7256 0 3808 N 25 6175 4413 * * * * * 2527 5998 4594 6032 1297 * * 5873 * 5713 1998 * * 25 330 5872 2417 1585 585 0 * 7251 1000 4013 G 26 3884 5839 * 4775 5303 1172 4208 5034 4257 4815 * * * 6172 4205 4104 4774 3760 * * 26 16 * 6462 * * * 0 7162 0 4745 G 27 * * 4707 * * 1166 5362 6036 4510 5127 * 2345 5211 * 4077 3273 * * * 5843 27 101 * 3893 * * 122 3625 7248 0 4677 L 28 * * * * 4606 * * 2350 * 666 6205 * 4070 6460 * * * 4844 * 6248 28 23 6000 * 0 * 948 1054 7235 1000 3404 G 29 4449 * 4423 6267 6283 3489 3997 6490 6122 3712 5984 4561 1720 6788 * 2308 4170 * * * 29 19 6267 * 0 * 593 1569 7259 1000 2182 N 30 5661 4597 4061 3315 3692 4737 5396 * 3921 6767 6252 3819 2957 4472 5494 3033 4118 6779 6516 3557 30 18 6370 * 0 * 0 * 7291 1000 1000 G 31 4188 * 3194 3707 6351 2494 4983 * 5612 6458 6458 2896 5539 4089 3963 2745 6627 * 5718 4730 31 0 * * * * * * 7418 0 0 V 32 3949 4083 * 6169 4302 6442 * 2687 6528 2954 4127 6468 * * * 6670 2956 1748 * * 32 0 * * * * * * 7565 0 0 S 33 * 6684 3561 5133 6838 6550 6550 * 5628 6884 * 3768 7065 3892 * 2226 1162 * * 6717 33 0 * * * * * * 7518 0 0 R 34 4818 * 3181 1121 * * 6519 4800 3489 5034 6540 * 6645 4402 4295 4246 5643 6100 * 5520 34 0 * * * * * * 7528 0 0 N 35 3633 * 3067 1675 * 5744 5104 * 4101 * * 4633 5274 3364 4559 3284 4512 5650 * 6828 35 24 5918 * 0 * * * 7528 1000 0 Q 36 5392 * 2219 2048 * * 5480 4198 5842 3617 5531 5067 6701 3493 5459 4409 3738 5022 * 5761 36 0 * * * * * * 7528 0 0 L 37 * * * * 5078 * * 2043 * 745 5331 * * * * * * 3234 * * 37 0 * * * * * * 7545 0 0 L 38 3996 * * 2906 6938 6203 3977 5763 2607 3573 4952 5703 * 4057 2467 6554 4413 6181 5710 3852 38 20 6172 * 2000 415 * * 7545 1000 0 P 39 3682 6815 3007 2580 * 5342 4706 6695 3774 5664 6405 3899 4747 3504 4324 2736 4575 * * 6640 39 9 7327 * 2000 415 * * 7545 1000 0 V 40 4254 5320 6783 4127 5294 * 4018 2350 * 1725 6564 * * 5144 5648 5957 4713 3518 * 3837 40 0 * * * * * * 7545 0 0 L 41 5932 4731 * * 346 * * * * 3517 5861 * * * * * * 4198 * * 41 0 * * * * * * 7545 0 0 E 42 4445 * 5223 2413 6917 3308 * 7586 3416 4172 * 5088 * 4725 3711 1969 4473 5414 * 6893 42 0 * * * * * * 7545 0 0 K 43 3186 * 5209 2950 6574 6176 5971 5780 2412 * * 4407 2776 3026 4170 4202 4582 5653 * * 43 11 * 7089 * * * * 7545 0 0 C 44 5022 3417 * * 1403 5920 3805 5167 6559 5573 * * * * * 6173 * 4603 5883 1847 44 15 6569 * 0 * 0 * 7539 1000 1000 G 45 5986 * 5720 5561 * 253 6468 * 6531 * * * 5370 5092 6798 6714 * 6528 * * 45 13 6759 * 0 * * * 7545 1000 0 L 46 5138 6628 2974 2940 4936 3701 4912 4785 4927 5779 * 3279 3244 4553 4143 4137 4050 5209 * 5523 46 80 4218 * 1425 672 * * 7545 2811 0 V 47 * 5636 * * 4877 * * 1279 * 2552 * * 5103 * * * 5145 1763 * 6468 47 54 5173 6779 1945 434 * * 7545 2288 0 D 48 4681 * 4027 1791 6620 * 5501 3722 3384 4286 6703 4763 * 5559 3722 4206 3814 3523 * * 48 29 6723 6607 2585 263 * 0 7537 1000 1000 A 49 4794 5584 3014 2774 5586 6549 4626 5437 3656 4171 6760 3760 * 4308 3288 2662 5994 * 6107 5708 49 15 * 6618 * * 1000 1000 7520 0 1793 L 50 4261 3185 * * 3706 * * 1976 6573 2883 5828 * 5643 * 6164 6891 6531 1785 * * 50 133 4165 4963 2239 343 0 * 7532 3258 1699 L 51 4811 6588 4057 4093 6578 * 4649 * 2824 4270 * 3514 * 6724 2026 6386 4033 2812 5568 6271 51 90 4050 * 2114 379 0 * 7510 3309 2256 M 52 * 5734 4277 * 2937 6851 * 2701 * 2388 3582 5093 * 6424 6396 5152 3510 2982 * 3903 52 35 5402 * 1334 729 * * 7536 2168 0 P 53 * * 4182 6530 3996 3478 5643 2986 4038 3262 3794 5120 3381 4429 5836 3419 6998 3472 * 5787 53 82 4463 6694 2199 354 * * 7536 3009 0 P 54 5084 * 5750 5931 4806 4954 4105 5486 2915 5676 5488 4618 2265 3907 2521 4620 4504 6753 6423 5846 54 52 4808 * 2380 308 0 * 7594 2691 1000 N 55 6621 5224 2683 3529 5797 2960 4526 * 3372 6538 6093 3207 4275 5759 4420 3049 5923 4430 * * 55 213 2866 * 2354 314 * * 7595 4666 0 K 56 5451 * 4810 4791 * 5105 5099 6646 1484 5013 6185 5213 4014 4666 2223 4598 5160 6424 6429 * 56 106 3819 * 2431 296 * * 7595 3572 0 P 57 5444 6913 4944 * * 1304 4637 * 5112 * * 3038 3761 5558 4385 2704 4880 * * 6618 57 179 3101 * 2112 380 * * 7595 4573 0 Y 58 5568 3116 * * 2268 * 5844 5014 5825 4569 4284 6549 * 3959 * 4741 4333 5569 * 1673 58 12 6927 * 2322 322 * * 7599 1000 0 S 59 760 3746 * * * 2225 * * * * 6778 * * * * 4253 5150 5001 * * 59 0 * * * * * * 7599 0 0 F 60 * * 6652 6428 753 * 4631 3959 * 3169 6465 5758 * * * * * 4997 6975 3319 60 0 * * * * * * 7599 0 0 A 61 4216 6185 * * 5301 * * 1958 5758 3332 5472 * * * * * * 973 * * 61 0 * * * * * * 7599 0 0 R 62 5598 7256 4870 1919 6903 6569 6776 4367 4127 5280 6353 4757 * 3057 3442 3493 3646 4069 * 5312 62 0 * * * * * * 7599 0 0 Y 63 * 4718 * * 1057 * * * * 5130 3507 * * * * * * * * 1454 63 0 * * * * * * 7599 0 0 R 64 3444 * 3648 2382 7111 5140 * 5870 3526 4044 4568 5320 5517 4218 3754 3323 3878 4765 * 6077 64 0 * * * * * * 7599 0 0 T 65 5772 * 2592 3988 * * 5700 * 3778 6764 * 2896 * 5620 4578 2096 2457 * * 4688 65 13 * 6802 * * * * 7599 0 0 T 66 4321 6675 6696 3263 6690 6680 3579 3576 3921 4137 6932 6415 2987 5511 3321 6775 3273 3310 * 4831 66 0 * * * * 0 * 7597 0 1000 E 67 3179 7214 3585 1746 6549 4595 5335 * 4959 5603 5815 5671 5752 2629 5767 3241 6593 5658 * * 67 0 * * * * * * 7599 0 0 E 68 3260 4938 2242 2446 6548 4815 4736 * 5141 6540 * 6714 * 4662 * 2388 4748 4125 * 6549 68 0 * * * * * * 7599 0 0 S 69 418 4732 * * 6605 5125 * 6416 5767 * * * * * * 3682 5954 4299 * * 69 0 * * * * * * 7599 0 0 K 70 4434 6903 4184 2927 5632 5544 4651 2987 2865 4997 6843 5097 * 3288 4136 4502 4646 3436 * 6775 70 0 * * * * * * 7599 0 0 R 71 2366 6807 5398 4009 6375 * 6601 5137 2491 3709 5853 4251 * 3792 3176 4090 6188 4628 * 4622 71 0 * * * * * * 7599 0 0 A 72 244 4132 * * * 5540 * 5337 * * * * * * * * * 4261 * * 72 0 * * * * * * 7593 0 0 Y 73 4340 5862 * 6803 4662 * 5356 2035 4466 2417 3455 * * 5695 4050 6678 * 2744 * 4207 73 47 6085 5829 1849 469 * * 7589 1786 0 V 74 4199 * 3715 2350 6809 5839 4913 6533 2713 5055 5603 3450 * 3504 3525 4492 4301 5174 * 6591 74 81 5622 4873 2099 383 978 1022 7582 1615 1722 T 75 2266 6295 4933 3074 5540 4091 4358 4891 3967 6348 6403 3920 * 4151 5591 3222 3667 4771 * 6433 75 23 6865 7045 2000 415 327 2301 7573 1000 2922 L 76 5366 5803 * 6769 3853 4998 * 6813 * 896 2232 * * 6173 * 5778 6494 5324 * 5572 76 44 5579 6731 1895 452 1000 1000 7593 1782 1115 N 77 4500 * 3206 5542 * 5618 2352 6564 6370 6588 * 1413 * 3432 4314 4101 * * * * 77 28 6666 6779 0 * 1000 1000 7567 1000 1737 G 78 6624 * 4237 5160 5063 845 * * 4664 5208 * 2500 * 6434 6987 6391 6431 5482 * 6188 78 16 * 6464 * * 0 * 7623 0 1696 K 79 3500 6429 6438 * 6189 6639 3862 4330 2142 4317 4150 * * 4436 2627 5090 3754 5391 * 3685 79 51 6394 5443 2322 322 0 * 7591 1000 1000 E 80 4881 * 4954 2475 * * 5367 4969 2283 4237 4621 5807 5669 3596 3092 4039 4022 4687 * * 80 21 6136 * 0 * 975 1025 7540 1000 1817 V 81 * * 6473 * 3638 6465 6453 2227 6380 1730 4972 5785 4737 * 5816 6529 4215 2761 * 4603 81 222 4673 3271 2930 203 0 * 7525 2223 1000 V 82 5114 * 4036 5933 5396 3825 * 3271 3770 3408 5870 3419 2914 4467 3672 4093 * 3883 * 4832 82 85 * 4136 * * 1353 717 7474 0 3725 D 83 4570 3969 1517 2595 * 3235 * * 5010 6536 * 4425 5773 * 6601 3404 * 4023 * * 83 27 * 5777 * * 2071 392 7389 0 3933 D 84 * * 3088 2697 * 2763 5987 4709 4301 3879 * 4395 5390 2667 4112 3929 5694 * * 4773 84 77 * 4258 * * 997 1003 7374 0 3697 L 85 3490 5562 2280 4186 4785 7791 4231 5669 3321 4197 5568 3735 * 3838 3383 5705 4664 5673 5610 * 85 26 5792 * 2807 222 1741 513 7489 1000 3343 G 86 4694 * 6094 3349 * 1704 4924 * 2924 * * 4690 * 3934 3248 3400 * 3781 * * 86 40 * 5194 * * 2215 350 7529 0 2845 Q 87 5585 * 5428 4808 * 4701 5595 3759 2473 3084 3030 3071 * 4363 4014 4058 5531 4795 * 5675 87 0 * * * * * 0 7443 0 3055 K 88 4484 * 4567 4504 * * 3939 * 1839 5793 * 3453 2337 * 3716 3633 4678 5557 * * 88 60 5330 5983 0 * 1131 880 7374 1000 3055 I 89 4251 * * * 4911 3921 * 1284 5300 3845 * * * 5338 * 5461 4470 2134 * 5488 89 51 * 4854 * * 484 1811 7415 0 2428 T 90 3437 * 4220 3448 * * * 5327 * * * 3858 3062 5365 4133 2593 1894 4935 * * 90 11 7046 * 0 * 614 1529 7326 1000 2200 L 91 4811 * 5220 * 1739 * 5119 4671 * 1787 4223 * * * * * * 2703 4276 5548 91 83 5325 5017 2000 415 0 * 7260 1000 1000 Y 92 2806 * 4421 3511 2899 * 4881 * * * 5061 * * * 3728 5314 5290 * * 1327 92 0 * * * * * 0 7038 0 1000 L 93 5101 4167 * 4901 * * * 3027 5228 1370 * * 4806 5011 * 5116 3960 2856 * 4393 93 0 * * * * 0 * 6987 0 1000 N 94 3884 * * 3054 3951 4176 4850 * 4078 * * 2534 * 3974 5181 1696 5293 * * * 94 0 * * * * * * 6870 0 0 F 95 * * * 4860 1504 * 5014 5410 4799 5110 * * 3996 4775 * 4120 * * 3503 2008 95 0 * * * * * * 6748 0 0 V 96 2706 * * 6112 * * * 2218 4551 4596 2691 * * * * * 3878 1687 * * 96 0 * * * * * * 6357 0 0 E 97 * * 3507 1909 * * * * 2246 * * 4541 3547 2464 4237 4711 4876 * * * 97 0 * * * * * * 6305 0 0 K 98 4170 * * * * 4326 * * 1329 * * 3268 * 3225 2805 3387 4404 * * * 98 0 * * * * * * 6031 0 0 V 99 3806 * * * * 3716 * 3646 * 3391 * 3524 * * * * * 760 * * 99 0 * * * * * * 4999 0 0 Q 100 2687 * * * * * 1892 * 2894 * * * * 1182 * * * * * * 100 0 * * * * * * 4124 0 0 W 101 * * * * * * * * * * * * * * * * * * 984 1016 101 0 * * 0 * * * 1701 0 0 //