HHsearch 1.5 NAME d2cota2 FAM FILE d2cota2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2cota2.a3m DATE Tue Mar 9 01:32:49 2010 LENG 38 match states, 38 columns in multiple alignment FILT 118 out of 11612 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.8 EVD 0.5274 2.9710 SEQ >ss_dssp CCCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCC >sa_dssp EEEDEEDEEEEECCAEEDDEDCEEDDEADECDEEDDEE >ss_pred CCCEEECCCCCCEEECCCCCEEEECHHCCEEEEEECCC >ss_conf 97300027883216765781990101242125311688 >Consensus xrHxxxHtxekpyxCxxCgkxFxxxxxLxxHxrxHTGE >d2cota2 GRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE >UniRef50_D2A690(240-279:288) Putative uncharacterized protein GLEAN_15029-OG6047 n=1 Tax=Tribolium castaneum RepID=D2A690_TRICA E=0.0005 s/c=1.14 id=28% cov=103% AKHQRTHFDTKPYACQVvgCTKKYTDPSSLRKHVKNHTSE >UniRef50_UPI0000F2E4A1(608-645:898) PREDICTED: similar to hCG2041454 n=1 Tax=Monodelphis domestica RepID=UPI0000F2E4A1 E=5e-05 s/c=1.28 id=28% cov=103% AQHLQVHNKEKTFQCPECDKSFRQNRSLKAHMSKHNGE >UniRef50_UPI00016E6366(229-265:384) UPI00016E6366 related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E6366 E=0.0004 s/c=1.24 id=32% cov=100% ARKERLLTANRPYGCEHCPKAFTTAAHLKEHLKIHSG- >UniRef50_C3ZWS5(445-481:584) Putative uncharacterized protein n=6 Tax=Branchiostoma floridae RepID=C3ZWS5_BRAFL E=3e-06 s/c=1.43 id=29% cov=100% -RHMMKHTGEKPFICEQCGYRSVEKAQLARHIRSHTGE >UniRef50_B4M6M2(283-317:376) GJ16809 n=2 Tax=Drosophila RepID=B4M6M2_DROVI E=0.0006 s/c=1.29 id=25% cov=95% -KHLLCHSGEKNYSCQICGKQFSRAENRNVHHFVHS-- >UniRef50_B0WE45(338-371:634) Zinc finger protein 38 n=1 Tax=Culex quinquefasciatus RepID=B0WE45_CULQU E=0.0006 s/c=1.33 id=26% cov=92% -RHQRTHSNEAQFVCPFCGRGFNHESNFAQHKLRH--- >UniRef50_A9VAE0(165-197:1268) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAE0_MONBE E=0.0003 s/c=1.41 id=32% cov=74% ------HSQERRHVCKDCDRTFQRRDHLDKHQR----- >UniRef50_UPI0000D9A729(447-483:782) PREDICTED: similar to Zinc finger protein 479 (Zinc finger protein Kr19) (HKr19) n=2 Tax=Catarrhini RepID=UPI0000D9A729 E=3e-06 s/c=1.44 id=32% cov=100% -KHKTRHTGKNHFKCKKYGKSFCMLSHLNQHQVIHTRE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 785 * * * * 1253 * * * * * * * * * * * * * * 1 0 * * * * * * 4256 0 0 R 2 2793 * * * * * * * 2217 * * * * 2105 1292 * * * * * 2 0 * * * * * * 5702 0 0 S 3 * 6545 6426 * * * 192 * 5977 * * * * * 4500 4989 * * * 6538 3 0 * * * * * * 5906 0 0 E 4 4847 7008 * 3467 6520 * 4483 4020 3338 3830 2737 5819 * 1982 4141 4573 6468 4813 * 6142 4 0 * * * * * * 5920 0 0 W 5 4795 * * * 6840 * 5783 4741 3168 3983 4953 4723 * 4484 1312 5138 4664 4026 4321 5139 5 0 * * * * * * 5920 0 0 Q 6 4538 6072 * 6122 * * 4464 2151 4504 6526 5295 5289 5574 5746 4629 2936 2557 2551 * * 6 0 * * * * * * 5920 0 0 Q 7 * * * * * 6352 228 * * 5788 * * 5935 6655 5567 6478 5992 6444 * 5056 7 0 * * * * * * 5925 0 0 R 8 3899 6477 * 5573 6951 * 5992 5252 4585 5926 5123 4503 5254 * 4145 2545 1131 6770 * * 8 0 * * * * * * 5925 0 0 E 9 5355 * 3169 3660 * 1371 6196 * 3602 7118 6572 3985 6865 3866 3640 5140 7080 5809 6526 * 9 17 6439 * 3459 138 * * 5925 1000 0 R 10 5949 6474 3535 1118 6481 6012 6684 4663 3926 4931 * 5814 5346 3474 5157 5169 4715 5330 * * 10 17 6444 * 1585 585 * * 5925 1000 0 R 11 5867 * * 6739 6029 6540 * * 972 * 5352 5089 5264 4875 1664 6954 * * * * 11 14 6739 * 0 * * * 5923 1000 0 R 12 5676 * 5242 * 6980 * 6812 6813 4463 4528 6848 4347 857 5940 4141 3672 4124 5572 * * 12 0 * * * * * * 5923 0 0 Y 13 * 5191 5948 * 2046 * 2573 * * 6060 * * * * 6355 6131 * * * 986 13 0 * * * * * * 5923 0 0 K 14 4806 * * 2828 * 5536 5114 5570 1785 6475 5336 5476 4466 3857 3854 4301 3776 3528 * 6733 14 0 * * * * * * 5923 0 0 C 15 5789 106 * * * * * * * * * * * * * * * * 6123 4715 15 0 * * * * * * 5923 0 0 D 16 4378 * 3257 2789 * 3946 3886 * 3273 6136 * 4279 3328 4149 7056 3084 3160 7047 * * 16 0 * * * * * * 5923 0 0 E 17 6688 * 5680 1885 5419 * 4061 2563 4478 4418 6755 * * 3109 * 5611 5084 3432 6060 3772 17 42 5107 * 1000 1000 * * 5923 2386 0 C 18 * 278 * 6404 6739 5011 * * 6060 * * * * 5834 * 5450 * * * 3890 18 0 * * * * * * 5923 0 0 G 19 5955 * 3823 4369 * 841 5422 * 5315 6126 * 3960 4553 7064 4844 3682 5895 * * * 19 48 4943 * 1000 1000 * * 5923 1834 0 K 20 5505 6404 * 4859 6835 7021 * 6540 662 6825 6052 5458 * 5599 3129 * 6027 5760 6475 4450 20 26 5832 * 733 1328 * * 5923 1463 0 S 21 2103 6623 5290 5981 * 3710 7058 5699 4303 5058 6483 4708 5328 5356 3775 2344 3306 4185 * 7161 21 0 * * * * * * 5923 0 0 F 22 5699 4802 * * 337 * * * * 6078 * * * * * 6698 6544 6535 * 3217 22 0 * * * * * * 5923 0 0 S 23 3469 6304 * * 6997 6886 6453 4644 2874 5644 5357 3971 * 5759 3033 2313 2864 3863 * 4762 23 0 * * * * * * 5923 0 0 H 24 5390 5182 4333 4360 5725 * 3223 6739 4605 5313 6268 5110 * 2764 2468 3411 4558 4959 4093 4277 24 0 * * * * * * 5923 0 0 S 25 3502 6560 * 5554 6479 6816 * 6768 2307 4546 5889 3365 3815 4822 3013 2338 5986 4591 * 7273 25 0 * * * * * * 5923 0 0 S 26 3736 * 3289 4363 5948 4093 3881 * 5879 * 7017 4719 5826 5038 5589 1410 4708 6006 5045 4668 26 0 * * * * * * 5923 0 0 D 27 3757 5278 4211 5569 5007 5542 2496 5748 4436 5432 * 2471 6560 6768 4945 2758 3692 5672 * 5056 27 0 * * * * * * 5923 0 0 L 28 7066 5294 * * 3789 * 6922 6477 * 503 3906 * 6131 * 4867 * * 5436 6961 5429 28 0 * * * * * * 5923 0 0 S 29 4013 6479 5507 5153 6594 * 5627 4138 2028 4901 6404 3526 * 5116 3530 3920 2645 3821 * * 29 0 * * * * * * 5923 0 0 K 30 3608 5458 5184 3799 6965 * 5515 3668 3647 5730 5265 4589 * 3198 2336 5035 4118 3144 * 6273 30 0 * * * * * * 5923 0 0 H 31 * * * * * * 136 * * 5699 * * * 5458 * * * * * 4374 31 12 6879 * 0 * * * 5923 1000 0 R 32 5911 * 6130 3261 6610 * 5056 4587 3760 3094 2642 6550 5458 2565 3290 5467 6766 4261 * 4534 32 0 * * * * * * 5925 0 0 R 33 6060 * * 6472 6850 5212 * 4670 2646 3303 4907 5131 * 5514 1112 5058 4442 * 7229 6817 33 17 6416 * 1877 458 * * 5925 1492 0 T 34 6186 * * * 6395 6469 6138 2028 4761 4468 5019 4850 * 5939 4202 4266 1779 2816 * * 34 0 * * * * * * 5923 0 0 H 35 * 6409 5946 * * * 105 * 5647 * * * * * * * * * * 5476 35 0 * * * * * * 5825 0 0 T 36 5053 * * * * 5748 * 6765 * 5981 5183 4876 * 6005 * 2032 744 7106 * * 36 0 * * * * * * 5803 0 0 G 37 6312 * 5873 5419 * 407 * * 4201 * * 4334 * 4752 * 5179 5357 * * * 37 0 * * * * * * 5575 0 0 E 38 * * * 66 * * * * 5378 * * * * 5602 * * * * * * 38 0 * * 0 * * * 5124 0 0 //