HHsearch 1.5 NAME d2ck0l2 FAM FILE d2ck0l2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2ck0l2.a3m DATE Mon Mar 8 19:35:19 2010 LENG 93 match states, 93 columns in multiple alignment FILT 102 out of 722 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.2 EVD 0.4542 -0.3054 SEQ >ss_dssp CCCHHHHTTTEEEEEEEEEEESSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEEEEEC >sa_dssp EBDEECCEEDCABBDBEBEEBECDECDCCBCBDEEDCEEDCEDDDDEDDEEDDCCBACACADBDDDCBDECDCACBCBDBEEDEEDDEEDCEE >ss_pred CCCHHHCCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEECCCEEECCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEECC >ss_conf 937756479838999999733164459999999899444512123058638970899999997052003798799999908998754545129 >Consensus PPsxxxxxxxxvtLxCxxxxfxPxxixvxWxxxgxxixxxxxxxxxxxxxxdgtxxxxSxLxixxxxxxxxxxytCxVxHxxxxxpixxxxxx >d2ck0l2 PPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR >UniRef50_A9UMG6(178-257:634) LOC100135349 protein (Fragment) n=5 Tax=Xenopus RepID=A9UMG6_XENTR E=5e-10 s/c=0.82 id=19% cov=87% ---------NSVTMGCLVTGYMADPLEIQW--NDGSITTGIKTMGPVLSAADGLYTLSSQLTILASEW-KNTTYRCKVVHNSTNTKQEKSLK- >UniRef50_D0EP38(30-107:112) Beta-2 microglobulin n=3 Tax=Carcharhinus plumbeus RepID=D0EP38_CARPL E=4e-05 s/c=0.63 id=18% cov=83% ----EEGKSNV--LLCHAKDFTPPNIKLELLENGKTIPNA--NQSDLSFESDWSFKLTKFVEVTPEA---GTKYSCKVEHNGNSREV------ >UniRef50_P01871(228-320:452) Ig mu chain C region n=83 Tax=Eutheria RepID=IGHM_HUMAN E=1e-08 s/c=0.65 id=19% cov=98% PPSfASIFLTKSTKLTCLVTDLTTYDsVTISWTRqNGEAVK---THTNISESHPNATFSAVGEASICEDDWNSGERFTCTVTHTDLPSPLKQTISR >UniRef50_Q0E9F2(586-663:1542) Sticks and stones, isoform B n=17 Tax=Diptera RepID=Q0E9F2_DROME E=0.0003 s/c=0.59 id=18% cov=83% --PEELRPGMEATIICDSSSSNPPA-KLSWWKDGIPIEGINNTSKPGLWGG-----TVSTLEfrVNVTQEMNGQVYTCQSANEALQ--------- >UniRef50_A4JYN7(158-231:367) CDNA, clone cssl:d0207 (Fragment) n=2 Tax=Danio rerio RepID=A4JYN7_DANRE E=0.0007 s/c=0.61 id=19% cov=75% ---------------CMASGARPAA-RVFWRLGALNTSLNTHTSST--EHSDGTFTVQSHIYGVPSKHLHQKKIQCVVQHITFTEDL------ >UniRef50_UPI0000E49EB8(613-692:979) PREDICTED: similar to nephrin, partial n=6 Tax=Strongylocentrotus purpuratus RepID=UPI0000E49EB8 E=0.0003 s/c=0.58 id=21% cov=87% ----------SAAVTCIANNGYPAPV-FQWYLGTTDLTN--QSATEKELNEYNRMSARSVLTFTPKKSDHDQYLVCEVFQPGAQPAWSRSVRK >UniRef50_Q52KR2-2(145-230:696) Isoform 2 of Leucine-rich repeats and immunoglobulin-like domains protein 2 n=2 Tax=Euarchontoglires RepID=Q52KR2-2 E=2e-05 s/c=0.58 id=18% cov=90% PESTIALRGVNVTLTCTAVSSSDSPMSTIWRKDSEILYDvDIENFVRYRQQDGEALEYTSVLRLFSVNFTDEGKYQCIVTnHFGS---------- >UniRef50_B4F746(479-575:816) Putative uncharacterized protein (Fragment) n=1 Tax=Xenopus (Silurana) tropicalis RepID=B4F746_XENTR E=3e-06 s/c=0.54 id=20% cov=94% -PLQSERENNKLRLSCNISNYFPDALTVSWFgkkKGSQELFPVTGSDiyviqkPQSERGTNYTYKCKACLVLPlPESTEQEMEYICRVGHPSLKEPI--- --- >UniRef50_UPI00017B3893(530-621:774) UPI00017B3893 related cluster n=2 Tax=Tetraodon nigroviridis RepID=UPI00017B3893 E=8e-09 s/c=0.67 id=18% cov=99% -PTGSHLSTSRVrSLHCIVSGFFPANVLLFWKENDHEVSTTRYTNYGPWKYQGSSTFSMNSVLNTSVSKNISSTYSCVVKHESSKNPFVSTVK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 6994 0 0 P 2 4544 * * 5314 * * * * * * * * 317 5230 * 3282 * * * * 2 149 3345 * 1784 495 * * 7564 3042 0 S 3 * 6115 * 4175 5575 5624 * 5939 5489 4507 5310 5402 2857 * 5889 1269 2599 5466 * * 3 135 3486 * 1984 421 * * 7767 3015 0 S 4 3332 * 4849 3107 * 5015 * 4946 5864 2566 * * 3585 4088 3387 3235 3537 3828 * * 4 19 6231 * 3459 138 * * 7824 1000 0 E 5 4279 * 4401 1452 * * 4811 4644 4392 5589 5842 4545 6162 5653 4134 2615 3966 6221 * * 5 0 * * * * * * 7909 0 0 Q 6 3501 * 5622 1758 * * 5914 3632 4383 3580 * 4411 4326 3377 5090 4546 5661 3610 * * 6 0 * * * * * * 7893 0 0 L 7 5324 * 5213 4860 5088 3927 * 2387 6240 1838 4757 6078 * * 3266 6103 4096 4208 4919 5766 7 42 6300 5988 3585 126 * * 7980 1000 0 T 8 4687 * 4156 2933 * 5219 * 5081 4094 3978 * 5094 4019 2652 4400 3120 2590 * * 5863 8 42 5124 * 2059 396 * 0 8131 1680 1000 S 9 5193 * 6022 3784 * 1984 3559 * 4386 6280 * 3080 * 5492 3132 2805 4048 5140 * * 9 24 5947 * 0 * * 0 8266 1000 1000 G 10 6244 * 3319 4556 * 2718 4858 * 4546 * 6510 2200 6401 3940 4033 2520 4094 6027 * * 10 21 6128 * 3000 193 0 * 8272 1000 1000 G 11 6686 * 5552 3557 6845 5089 6043 * 2741 5365 6440 3258 3526 4407 3763 3032 2725 4436 6206 * 11 95 4258 6418 1565 595 * * 8291 2811 0 A 12 2058 * * 6223 * 4500 * 4140 * 3544 * 6594 * * * 4192 3429 1370 6040 * 12 104 3846 * 1107 901 * 0 8331 3379 1000 S 13 5138 * * 4616 * * 5632 6042 3999 * * 3594 6602 4300 4361 2830 1170 4177 * * 13 111 4013 6403 1227 804 0 * 8364 3353 1000 V 14 5205 * * * 4095 * * 3365 * 714 5740 * * * * * * 2684 * 4902 14 26 5806 * 1067 936 * 0 8360 1676 1000 V 15 6461 * * 5097 5125 4138 6527 3474 4331 3787 4908 6219 * 4485 6265 3210 1556 3345 * * 15 16 6535 * 0 * 0 * 8360 1000 1000 C 16 4152 126 * * * * * * * 6311 * * * * * * * 6060 * * 16 19 * 6286 * * * * 8461 0 0 F 17 6932 * 4710 3702 5753 6401 3346 4052 4821 2351 5207 4405 6396 4962 4164 4081 3214 3590 6528 5534 17 10 * 7125 * * 0 * 8433 0 1000 L 18 1531 * * 5404 * * * 2308 * 3746 * * * * * 3832 5737 1916 * * 18 18 * 6331 * * 0 * 8468 0 1000 N 19 4429 * 5330 3374 5173 * 5242 6246 3827 6424 * 3571 5171 5131 3765 2337 2379 4525 * 4832 19 11 * 7060 * * 0 * 8421 0 1000 N 20 * * 2532 4459 * 1617 4219 * 5114 * * 2921 6493 4821 3577 3460 * * * 5659 20 17 * 6414 * * 0 * 8467 0 1000 F 21 3297 5688 5572 * 1162 3745 * * * 3934 6334 * * * * 3166 * 5822 * 2951 21 36 6427 6288 0 * * 0 8451 1000 1000 Y 22 5748 * 5730 * 2767 6249 3359 * 3361 5048 6110 4145 * 6553 4431 2905 4605 6437 6962 1969 22 13 6792 * 0 * * 0 8425 1000 1675 P 23 4755 * 5326 6411 6419 * * * * 5730 6411 6249 328 6042 * * 4738 5533 * * 23 41 * 5160 * * 0 * 8425 0 1675 K 24 2830 * 3200 3286 * 5523 6618 6559 2701 4679 6599 4858 2675 4146 4071 4050 * 6324 * 5476 24 13 * 6809 * * * 0 8435 0 2039 D 25 2870 * 2793 3933 7102 3830 5204 4843 * 4861 * 2777 3287 4990 4623 3750 5537 3983 * * 25 300 5762 2562 0 * 0 * 8431 1720 2626 I 26 3616 * * * * 6228 6349 1586 * 2388 4429 * 6070 6044 6105 * 5206 1996 * * 26 50 * 4864 * * 0 * 8274 0 5372 N 27 5121 * 3718 2943 6723 * 5018 6729 3597 5125 5393 3788 * 3869 4049 3706 1835 * * 5489 27 0 * * * * 0 * 8453 0 2136 V 28 6276 * * * 3425 * * 2362 * 1998 4608 * * * * * 5553 1499 * 4920 28 0 * * * * * * 8461 0 0 K 29 7054 * 5276 4181 4060 5666 6495 5076 2815 5666 6811 5814 * 3964 3355 2987 1928 4658 * 6332 29 0 * * * * * * 8461 0 0 W 30 * * * * 5488 * * 5170 * 5586 * * * * * * * * 106 * 30 77 5667 4946 2945 201 * * 8461 1768 0 K 31 * * * 3445 2675 * 6705 4374 3285 2716 3882 * * 4492 3599 4813 3842 * 5830 3043 31 92 5112 4923 1745 511 * 0 8459 2251 2426 I 32 5569 5561 * 3495 * * 5171 5056 1721 3253 5595 5307 * 4187 2295 4861 * 3966 * * 32 106 3819 * 2547 271 859 1157 8414 3595 3489 D 33 5679 * 1787 4118 * 2613 6548 * 4481 * * 1689 * * 5472 4728 5682 * * 5361 33 0 * * * * * 0 8429 0 2226 G 34 6669 * 2683 6647 6035 958 6502 * 4790 5718 * 4074 * * 4629 3769 4179 * * * 34 24 6860 6976 0 * 1617 569 8429 1000 2226 S 35 5055 * 4850 2844 * 4152 4828 5087 2696 5471 6032 4429 6584 3211 6299 3344 3166 3672 * 5875 35 27 7084 6524 2000 415 649 1465 8455 1000 2275 E 36 4810 * 4225 2038 * * 6841 4550 3499 5070 * 4301 2859 4594 4876 3744 3489 3838 * * 36 0 * * * * 0 * 8461 0 1725 R 37 5586 * 6508 4841 6594 5459 * 2035 * 1869 4347 6422 4286 6784 4498 5783 5169 2657 * 6329 37 0 * * * * * * 8461 0 0 Q 38 5564 * 5598 4314 6946 6351 4790 5108 4459 4014 6578 4770 2536 3690 4657 2631 2957 4665 6306 4792 38 103 4878 4829 1935 438 * * 8461 2414 0 N 39 3746 6528 3816 2595 * 3151 4646 * 4055 4743 6469 3622 4520 4238 5133 2882 4625 6467 5434 * 39 45 6306 5773 0 * * 0 8455 1000 2453 G 40 4096 6365 2776 3802 6551 2792 6904 4250 4278 * * 3638 3757 4827 4875 3350 3828 4635 * 6400 40 73 5895 4927 1828 477 1821 480 8450 1706 3316 V 41 4954 6191 4965 4111 7128 4337 5344 3190 4902 * 6218 4419 3551 3597 4855 3072 3746 2527 * 6605 41 30 6475 6712 2000 415 1186 835 8425 1000 3767 L 42 4432 * 5768 3564 5705 5172 4879 4645 3396 5533 6823 5171 6250 2555 3790 3434 3691 3329 * 4273 42 18 * 6362 * * 363 2170 8434 0 3176 N 43 4766 * 5680 3801 * 5034 5200 4134 4869 3705 6968 4643 4391 3685 6507 2688 2267 4291 * 4384 43 42 * 5138 * * 963 1037 8433 0 1659 S 44 4675 * 4313 4632 4242 3736 * 5406 4777 4733 4592 3997 4649 3826 6272 2646 2409 6636 5717 4638 44 64 5444 5599 1467 648 * 0 8425 1669 2797 W 45 6503 * 4009 4153 6222 4070 6306 4788 4396 3587 * 3357 2748 4760 5430 2860 3647 3928 5848 6499 45 84 * 4137 * * 940 1063 8407 0 3510 T 46 3255 * 3624 3364 * 4099 6107 5734 5513 4155 6429 4471 3077 3049 4998 4685 3023 4485 * 6228 46 65 * 4514 * * 577 1601 8426 0 3922 D 47 5351 * 5753 4348 4140 6734 4907 3182 4322 3562 4623 * 2713 * 5433 3171 3725 2944 * 5021 47 37 6528 6115 0 * 1948 433 8408 1000 3740 Q 48 * * 5500 3012 6489 6369 4720 4613 3638 2533 5099 5481 5258 3484 2606 4211 4795 5349 5021 5498 48 39 6755 5828 2000 415 525 1712 8372 1000 3522 D 49 5083 * 4073 3076 6732 4956 4915 5194 3783 4776 * 4851 2490 4233 3002 4349 3463 5527 5621 6819 49 59 6710 5042 0 * 1821 480 8419 1000 2557 S 50 5641 * 2949 4180 * 3146 3594 * 4893 6532 * 1898 4992 4145 5660 3153 4848 6632 * 5518 50 88 5233 4935 1220 809 1443 662 8398 2142 3402 K 51 4172 * 3701 3258 6352 2869 * * 3866 4451 5673 4076 3301 4938 4476 2583 5181 6273 6321 5518 51 80 * 4204 * * 1130 881 8360 0 3832 D 52 6485 5443 1202 5421 * 4236 5233 * 4526 * * 2440 5425 6186 * 4208 4997 5362 * 4214 52 65 6567 4892 0 * 1686 537 8377 1000 4291 S 53 4965 * 5067 4449 6388 987 * 5247 4024 6496 * 4330 * 4404 4166 4621 * 6352 4567 5097 53 43 5485 7084 1835 475 1025 975 8357 1691 4378 T 54 5521 6707 * 4917 6487 4373 * 6380 6623 3312 5351 4920 * * 4816 2698 1085 * * 4844 54 50 5869 5876 2000 415 1468 647 8426 1760 3443 Y 55 6189 * 5297 4967 1699 5443 4543 6379 6274 6273 4943 4165 * 5137 * 5680 4385 * 5279 1702 55 17 6375 * 2000 415 1569 593 8424 1000 3440 S 56 5108 5358 5611 6316 5563 * 5342 4772 4785 6149 5819 3565 5351 3235 4395 1929 2368 4880 * 6634 56 50 5339 6695 1812 484 421 1981 8454 1685 2692 M 57 2729 4506 * 6297 6414 5622 * 3864 4320 3304 3932 * * 3580 * 4350 3033 2529 6845 4715 57 0 * * * * * 0 8468 0 1692 S 58 5188 * * * 4843 6101 5160 3801 5194 5366 4657 4807 * 4524 3752 2453 2024 3322 5606 5069 58 0 * * * * * 0 8468 0 1692 S 59 3699 5318 6669 * 5449 4185 5826 6577 6758 * * 4828 6308 * 5869 752 4019 4256 * * 59 46 6412 5693 1585 585 921 1084 8468 1000 1692 T 60 5235 5966 6655 3493 4897 * 4408 5153 5161 3998 5148 6407 * 4364 4132 2898 2755 2837 5259 3932 60 0 * * * * 1604 575 8453 0 2255 L 61 6667 5200 * * 6302 * * 3654 * 660 6291 * * * * 6176 5758 2756 6701 4831 61 0 * * * * 0 * 8447 0 1682 T 62 4259 * 4656 3754 * 6807 4213 4522 3789 4373 6566 5063 5620 3389 3480 3794 2417 4009 6184 5272 62 48 6854 5375 1000 1000 * * 8461 1000 0 L 63 6716 * * * 2913 5781 6765 1980 * 2247 5513 5610 6504 6586 6411 * 6580 2018 6809 5358 63 70 6408 4817 0 * 964 1037 8428 1000 1696 T 64 6951 5130 4585 * 5339 5507 * 5122 5592 4395 5505 3163 3135 5839 4055 3047 2079 3561 * 6563 64 64 5329 5752 0 * * 0 8403 1691 2622 K 65 2300 * 6376 6618 * 5214 5467 6560 4081 4337 * 6460 2014 * 3940 2713 4158 4009 * 6467 65 0 * * * * 943 1059 8398 0 3442 D 66 3524 * 4228 3612 * 4813 5125 4648 4322 4913 6267 4334 6337 4658 6680 2505 2750 2822 * * 66 27 * 5740 * * 1591 582 8400 0 2229 E 67 4016 * 3850 2706 6849 5438 * 4842 2781 4864 6442 4074 4301 3652 3498 3247 4488 6622 * 5684 67 79 6459 4567 1585 585 1915 444 8389 1000 2714 Y 68 5646 * 3711 2910 4727 4543 5713 6772 4384 3680 6573 4993 6483 4805 4331 3859 4056 4122 2394 5598 68 25 6774 6943 0 * 771 1273 8370 1000 3744 E 69 5452 * 1824 2888 5281 4369 6039 5630 4362 4320 5515 2775 * 4909 4931 4320 4141 * 6569 * 69 63 6541 4960 1000 1000 1858 466 8457 1000 2620 R 70 4299 6035 2044 4896 * * 3284 4805 3241 5385 * 3318 5188 4086 3442 4569 5507 5640 * 5221 70 9 * 7264 * * 1050 951 8403 0 3479 H 71 4411 * 3970 3217 * 1243 6845 * 4639 5278 6436 3985 5663 5776 4067 4162 4885 * 5468 * 71 0 * * * * 1936 437 8282 0 2829 N 72 4234 * 3795 4156 * 2401 5205 6470 3456 * 4999 4270 * 3225 4375 3168 3245 4477 * * 72 0 * * * * 0 * 8271 0 2421 S 73 * * 5788 3536 * 6513 4810 5317 3081 4292 6688 3767 6307 4300 3566 3102 2585 3004 7040 6905 73 44 6433 5779 0 * * * 8317 1000 0 Y 74 6507 * * * 2032 * * 3465 * 3426 * * * * * * * 3609 * 1062 74 0 * * * * * 0 8284 0 1195 T 75 5518 * 6728 5361 * 6498 * 3562 3757 * * * * 4577 3463 2385 1459 4013 * 5313 75 0 * * * * 0 * 8284 0 1195 C 76 * 59 * * * * * 5489 * 5823 * * * * * * * * * * 76 15 * 6564 * * * * 8307 0 0 E 77 6216 * * 2683 6263 * 4604 4255 4219 4216 5278 4389 * 3895 2543 5700 4005 2533 5011 5698 77 0 * * * * 0 * 8284 0 1000 A 78 2316 * * * 5398 * * 4859 * 5135 5717 * * * * 5755 5418 649 * 6155 78 0 * * * * * * 8289 0 0 T 79 4347 * 6034 2731 4439 4499 4488 5774 3524 6482 6725 4653 * 3142 4507 2750 3135 5244 * 4707 79 20 6193 * 0 * * * 8301 1000 0 H 80 * * 6509 6029 5509 * 446 * * 6237 * 3678 * 3628 * 6204 * 6727 * 5484 80 0 * * * * * * 8249 0 0 K 81 5507 6207 3881 2194 4706 5628 * 6505 3437 6396 6667 4936 2376 4315 3795 3534 6408 4865 * 6113 81 18 6336 * 2585 263 * * 8125 1000 0 T 82 2393 * 4680 3765 * 2026 5975 5980 * * * * 6706 * 6339 1678 3551 * * * 82 34 6437 6436 1000 1000 * * 8002 1000 0 S 83 6334 * 6120 * 4253 5207 * 5074 5454 1289 5776 4036 * 4805 * 2521 3863 6174 5906 4520 83 17 6422 * 0 * 0 * 7951 1000 1000 T 84 4174 * 6307 3589 * 3825 * * 3413 6175 * 4385 2160 3918 5903 3232 2363 6036 * * 84 40 5205 * 2546 271 * * 7903 1678 0 S 85 3599 * 4319 3030 6242 6156 5044 * 2522 5413 * 4165 3888 5758 4585 2843 2680 6487 * * 85 47 * 4977 * * * * 7855 0 0 P 86 3599 * 3722 4362 6040 5634 5954 * 5039 * * 4331 1000 3734 * 4730 4999 5854 * * 86 0 * * * * 1016 984 7559 0 1630 I 87 5503 * * * 4444 * * 1822 4939 1745 5000 * * 5101 5738 * 5483 2328 5823 * 87 27 5760 * 0 * 0 * 7449 1000 1000 V 88 5701 * 3879 3975 * * * 4090 3222 4021 5819 5534 * 3657 3707 3076 2447 3004 * * 88 24 5933 * 0 * * * 7159 1000 0 K 89 4480 * 5540 3882 * 5440 * * 1583 5467 * 5358 * 3502 2886 3575 3528 3881 * * 89 0 * * * * * * 7078 0 0 S 90 * * 4443 2864 * 5566 * * * * * 3095 * * 5383 1518 1711 * * * 90 0 * * * * * * 7007 0 0 F 91 4073 * * * 2300 * * 1615 * 2196 * * * * * * 5180 2597 * * 91 0 * * * * * * 6822 0 0 N 92 4336 * 2399 5019 * * * * 2837 * * 2367 * * 3616 1668 * * * * 92 0 * * * * * * 6016 0 0 R 93 * * * * * * * * 676 * * * * * 1418 * * * * * 93 0 * * 0 * * * 4749 0 0 //