HHsearch 1.5 NAME d2c4ba1 FAM FILE d2c4ba1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2c4ba1.a3m DATE Wed Mar 10 02:31:11 2010 LENG 108 match states, 108 columns in multiple alignment FILT 104 out of 113 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4443 1.4965 SEQ >ss_dssp CCCSHHHHHHHHHHHSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEEEECCTTCCSCCCTTCCEEEEECSCCSSSCCSCEEEEETTCCEEEESST TSCCEECC >sa_dssp EDCDBECAADCADEEEEBBEBBBCDEDADEEDBDDEEBBACEDBEDDAABCCDCDCEEEDADEEEECDBDCAAADBEEDECCDCBAABADDCCACCADCD CEECEECC >ss_pred CCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEECCC CCCEEECC >ss_conf 9544799999999857887322488999972988654898781887204762207888765747897689997058999878736898499858992541 21304519 >Consensus xxxxxxxvxxylxxxxxLPxxyiTKxeAxxlGWxxxkgxlxxxxpgkxIGGdxFxNrExxLPxxxxxxyxExdVxxxgxxRgaxRIVxxxdgxxYyTxDH YxtFxxix >d2c4ba1 VINTFDGVADYLQTYHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLIYKTTDA YQTFTKIR >UniRef50_Q2KZM8(51-156:160) Putative ribonuclease n=1 Tax=Bordetella avium 197N RepID=Q2KZM8_BORA1 E=2e-24 s/c=1.07 id=31% cov=95% -IASLARTVRHIGKLGRLPSVYITSDEAKRLGWSGKSSeSLWgiKLTDQKWIGGDVYRN--PSLP--GNEKWYSADLDVVKGYRSSKRLVYNlRSRQMFI STDLYAHFVEM- >UniRef50_C1D4D9(50-151:155) Probable ribonuclease n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4D9_LARHH E=2e-32 s/c=1.37 id=41% cov=87% -----------LAATGRLPDRFVTKRQAREAGWQPGKSLWqTDGLAGKSIGGDRFGNREHRLP---AGRWQEADLDYRGGKRNAKRLVFAGSGRRFVTVD HYQSFTEV- >UniRef50_Q53752(102-159:163) Ribonuclease n=2 Tax=Streptomyces RepID=Q53752_STRAU E=6e-17 s/c=1.52 id=29% cov=54% --------------------------------------------------GVVFENRESRLPKKGNGYYHEFTVVTPGSNdRGTRRVVTGGYGEQYWSPD HYATFQEI- >UniRef50_A8L3G0(278-349:349) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Frankia sp. EAN1pec RepID=A8L3G0_FRASN E=9e-10 s/c=0.90 id=33% cov=56% -------------------------------------------------GGTAYKNRsDPKLPETTEDgtpiRYKEYDRDpYDGVQRNDRRFVVGDDDAH YYTDDHYQSWVRFR >UniRef50_C4LHW9(51-144:146) Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LHW9_CORK4 E=7e-18 s/c=0.98 id=30% cov=81% ------------CNANQLPD------QARVVVDDIKSGGPFDY-PQKD--GSHFGNYENALPHKKSNYYREYTVdeDKTDHSRGPARIITGGSTAthpdv WYYTSDHYSSFCEMQ >UniRef50_D0L296(118-197:200) Guanine-specific ribonuclease N1 and T1 n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0L296_GORB4 E=8e-18 s/c=1.14 id=40% cov=69% ---------------------------------DAGKWPAAANAPGTH-GGDVFRNNERQLPvtdvSGARITYREWDVNPkrRGSGRDAERIVTGSDGSA WYTADHYRTFVVVR >UniRef50_B2TIQ0(64-123:123) Putative ribonuclease n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TIQ0_CLOBB E=1e-06 s/c=0.90 id=32% cov=26% ---------------------------------------------------------------------------------GPRRIVKNIDtGEVYYTWT HYGDagepaFVRIR >UniRef50_A1TWM1(432-537:546) S-type Pyocin domain protein n=3 Tax=Bacteria RepID=A1TWM1_MARAV E=1e-30 s/c=1.25 id=39% cov=95% VTESANPLVESLRNSGQLPPNYVTKAQAVKQGWKPGKA-LGNSIPQGQIGGDVFQNATSILPSAPERVWYEADVGLDSSmtrvKQPGTRLLYSNDGLLYV TTDHYET----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * V 1 * * * * * * * 1539 * * * * * * * * * 609 * * 1 0 * * * * * * 2112 0 0 I 2 * * * * * * * 1107 * 1574 * * * * * * 3068 * * 3633 2 0 * * * * * * 2484 0 0 N 3 3184 * * 3525 * * * * * * * 2406 * * * 4493 811 * * * 3 0 * * * * * * 2675 0 0 T 4 * * 2410 4625 * 4625 * * * * * * * 3068 * 1124 2711 * * * 4 0 * * * * * * 2786 0 0 F 5 3133 * * * 1834 * 3844 * 2041 2745 * * * 3471 * * * 4225 * * 5 0 * * * * * * 2786 0 0 D 6 3568 * 1776 2270 * * * * * * * 2125 * 2419 * * * * * * 6 0 * * * * * * 2908 0 0 G 7 * * 1837 2065 * 2824 3536 * 4447 * * 5319 4564 5578 3065 * * * * * 7 0 * * * * * * 3131 0 0 V 8 * * * * * * * 5114 * 4706 * * * * * * 3112 291 * * 8 0 * * * * * * 3146 0 0 A 9 1176 * * * * * * 4269 5175 3461 5157 * * * * 4308 5568 1799 * * 9 0 * * * * * * 3210 0 0 D 10 2224 * 1917 4147 * * * * 3702 5361 * 2676 * 4137 4108 3438 * * * * 10 0 * * * * * * 3210 0 0 Y 11 * * * * * * 3609 * * * * * * 4181 * 2929 * * * 451 11 79 4224 * 0 * * * 3210 1000 0 L 12 * * * * * * * 1364 * 977 4241 * * * * * * 4303 * * 12 0 * * * * * * 3235 0 0 Q 13 5137 3366 5199 5712 * 3606 3090 3981 2145 * * * * 3007 3284 * * 5406 * 3494 13 0 * * * * * * 3329 0 0 T 14 2574 * 4676 2659 * * * 5243 3303 * * 2787 * 2622 3646 5446 4418 * * 4323 14 0 * * * * * * 3342 0 0 Y 15 4141 * 5132 * 2889 * 3265 * * 4318 * 2218 * * * 4970 3324 * * 1842 15 0 * * * * * * 3342 0 0 H 16 3791 * * * * 1147 3100 * 3273 * * 2882 * 4219 4268 6090 * * * * 16 0 * * * * * * 3342 0 0 K 17 5401 * 4323 4794 * * 3617 5391 2029 * * 5294 * 2534 2070 * 3527 * * 5877 17 0 * * * * * * 3342 0 0 L 18 * * * * * * * * * 0 * * * * * * * * * * 18 0 * * * * * * 3484 0 0 P 19 * * * * * * * * * * * * 0 * * * * * * * 19 0 * * * * * * 3484 0 0 D 20 * * 1427 3333 * 4293 * * 4570 5412 * 3902 3298 5601 4026 2630 * * * * 20 84 * 4140 * * * * 3484 0 0 N 21 * * * 4434 4431 * * 5928 4221 * * 961 * 5018 3752 * * 4373 * 2554 21 0 * * * * * 0 3328 0 1000 Y 22 * * * * 1793 * * * * * * * * * * * * * * 491 22 0 * * * * * 0 3328 0 1000 I 23 * * * * * * * 563 * 4005 4434 * * * * * * 2220 * * 23 0 * * * * * 0 3328 0 1000 T 24 * * * * * * * * * * * * 4397 * 5621 4514 222 5018 * * 24 0 * * * * * 0 3328 0 1000 K 25 * * * 4397 * * * * 221 * * * * * 4434 4373 * * * * 25 0 * * * * * 0 3328 0 1000 S 26 2399 * 3403 3898 * 5621 4397 * 2088 * * 3975 * 3943 3477 3308 5252 * * * 26 0 * * * * 0 * 3328 0 1000 E 27 * * 5570 1002 * * * * 5376 * * 5905 * 1290 * * * 5067 * * 27 0 * * * * * * 3484 0 0 A 28 131 * * * * 4689 * * * 4370 * * * * * * * * * * 28 0 * * * * * * 3484 0 0 Q 29 6137 * * 3515 * 5601 * 5485 2089 4788 * 4053 * 3303 1695 4784 * 3692 * * 29 66 * 4476 * * * * 3484 0 0 A 30 1882 * 3391 2955 * * * * 1884 * * 5415 * * 2983 5270 * 4115 * * 30 0 * * * * * 0 3349 0 1000 L 31 3028 * * 5740 * * * * 4771 780 5288 * * 2999 * 4995 * 4115 * * 31 58 4660 * 2322 322 * 0 3349 1000 1000 G 32 * * 5653 * * 112 * * * * * * * * * * * 4184 * * 32 0 * * * * 0 * 3386 0 1000 W 33 * * 4207 * * * * * * * * * * * 4690 * * * 141 * 33 0 * * * * * * 3515 0 0 V 34 * * 2037 4589 * * 5368 5547 2457 * * 2884 * 4571 5347 2768 4466 3976 * 5088 34 37 * 5289 * * * * 3565 0 0 A 35 2189 * * * 4706 2521 * 4255 * * * 5921 1528 * 4691 3852 * * 4490 * 35 131 * 3529 * * 0 * 3563 0 1000 S 36 4110 * 5193 * * 1470 * * 2033 * * 4362 * 4902 4173 3769 4622 5302 4946 * 36 208 4362 3548 0 * * 0 3521 1000 1723 K 37 5701 * 4669 4639 * * * * 938 * * 5969 * 3774 3662 2242 * * * * 37 102 * 3874 * * 0 * 3389 0 2292 G 38 3014 * 3419 * * 859 * * * * * * * * * 3858 * 3851 3892 5284 38 190 4565 3626 0 * 0 * 3568 1000 1578 N 39 * * 3329 * * 3558 * * * 4233 * 1020 3308 * * 2818 5236 * * * 39 70 * 4408 * * 0 * 3457 0 1411 L 40 5066 * * * 4620 * * * * 460 * * 4252 4956 4559 * * 5302 4319 * 40 36 5331 * 0 * 0 * 3515 1000 1000 A 41 2991 2389 3982 4497 4278 3720 5812 * 5519 * * 3787 4589 5820 * 6056 5367 * 2073 * 41 59 4643 * 1000 1000 * * 3565 1000 0 D 42 5117 * 2239 2973 * * * * 2545 * * 2565 4126 3691 4920 3600 * 4589 * * 42 0 * * * * * * 3565 0 0 V 43 4904 * * * 3768 5367 * 5734 * 3694 4589 5117 * * * 5197 5347 1151 * 2319 43 188 3826 4278 748 1305 * * 3565 1477 0 A 44 1253 5281 * * * * * 5116 * 1999 4558 * * * * 5561 2803 3862 * * 44 87 5269 4926 1000 1000 0 * 3434 1000 1000 P 45 5369 * 3327 5912 * 5725 * * 5326 * * 4432 627 3907 5814 * 4740 * * * 45 55 4740 * 0 * * 0 3545 1000 1000 G 46 * * * * * 439 * * 2778 * * * * 3104 * * * * * * 46 0 * * * * * 0 3545 0 1000 K 47 5578 * * * * 3346 * * 541 * * * * * 2983 * 5082 4740 * * 47 0 * * * * * 0 3545 0 1000 S 48 2623 4481 3801 * * * 5082 * * * 3576 * * 3020 * 1320 * 4563 4580 * 48 154 * 3304 * * * 0 3545 0 1000 I 49 * * * * * * * 191 * 3379 5163 * * * * * * * * * 49 0 * * * * 1872 460 3328 0 1938 G 50 * * * * * 68 * * * * 4436 * * * * * * * * * 50 0 * * * * 0 * 3443 0 1720 G 51 * * * * * 38 * * 5277 * * * * * * * * * * * 51 0 * * * * * * 3962 0 0 D 52 4991 * 1110 6049 * 4019 * 4422 4474 * * 6458 * * 5470 3557 3116 3285 * * 52 0 * * * * * * 3962 0 0 I 53 5248 * * * * * 4406 2552 5247 * * 5672 5058 * 1922 * 3476 1706 * 5657 53 24 5912 * 0 * * * 3980 1000 0 F 54 * * * * 334 * * * * * * * * * * * * * 4755 2559 54 0 * * * * * * 3970 0 0 S 55 4875 * 6477 5286 * 1441 5743 * 4027 * 5215 5743 * 2799 4254 3244 3749 * * 4078 55 0 * * * * * * 3970 0 0 N 56 * * * * * 4908 * * * * * 83 5476 * * * * * * * 56 73 * 4344 * * * * 3970 0 0 R 57 3872 * 5254 * 3636 * * * * 5109 * 4197 * * 1013 5006 5898 * * 2336 57 100 5193 4648 0 * 1172 846 3874 1000 1553 E 58 * * 3541 387 * * * * * * * 5268 * 4870 * 5902 3785 * * * 58 0 * * * * 1000 1000 3825 0 1439 G 59 * * * 7176 * 1221 4867 * 2385 * * 5421 4182 6111 2465 3957 * * * * 59 0 * * * * 0 * 3897 0 1000 K 60 5530 * 5028 * * 6554 4494 2932 3548 2822 * 5760 4908 3556 2165 4137 5899 3304 * * 60 0 * * * * * * 3970 0 0 L 61 * * * * * * * * * 0 * * * * * * * * * * 61 33 * 5479 * * * * 3974 0 0 P 62 * * * * * * * * * * * * 0 * * * * * * * 62 173 4737 3730 1734 516 * 0 3943 1484 1000 G 63 4070 * 2790 2741 * 5350 6105 * 3198 6173 6943 6256 5525 2910 4177 2513 4073 5749 * * 63 222 * 2809 * * 2649 250 3898 0 2623 K 64 2218 6889 * 3392 * 5230 5760 4677 2030 * 6770 * * 2525 4037 4580 4567 5347 * * 64 0 * * * * 1995 417 3692 0 3405 S 65 3182 * 3627 5378 * 3129 * 6210 3119 * * 5331 2045 5000 3886 3252 3817 * * * 65 20 * 6158 * * 581 1593 3781 0 3089 G 66 3736 * * 3834 * 1426 5616 * 4568 7090 * 3631 * 6137 2579 2970 6847 * * 6124 66 18 * 6362 * * 726 1338 3984 0 2204 R 67 6130 * 3582 4457 * 1229 6144 6753 6304 * * 4288 * 6417 1767 * * 4750 * * 67 131 3531 * 1509 625 1500 629 3993 2246 1821 T 68 * * * 6289 5667 * 5015 4641 3582 * * 5387 * 4696 3923 4420 2506 2883 * 1615 68 0 * * * * 832 1190 4001 0 1493 W 69 * * * * 5730 * * * * 6311 * * * * * * * * 1525 687 69 0 * * * * * 0 4013 0 1000 R 70 6929 * * * 4035 * 2823 5182 3169 * * * * 3832 1654 * 4471 * * 2200 70 0 * * * * 0 * 4013 0 1000 E 71 * * * 157 * * * * * * * * * 5444 5754 5184 4861 * * * 71 24 5899 * 0 * * * 4047 1000 0 A 72 1655 3060 * * 3837 5537 6742 * * * * * * * * * * 5139 3942 1441 72 0 * * * * * * 4047 0 0 D 73 * * 711 * * * 5899 * 5537 * * * * * * * 1625 5232 * * 73 22 6029 * 0 * * * 4047 1473 0 I 74 5537 * * * * * 6119 1650 * 4141 * * 5899 * 5235 * * 875 * * 74 80 4823 5754 667 1434 * * 4047 1658 0 N 75 6133 * 2021 4025 * 4178 * 5626 4390 * * 1866 2884 * 4168 5796 4979 5295 * 6137 75 76 4279 * 556 1646 * 0 4028 1718 1000 Y 76 6424 * 5379 * 6414 7101 * 5171 5382 3981 * * 3899 6208 * 4561 1508 5108 * 1613 76 58 4654 * 577 1602 * 0 4028 2017 1000 T 77 4666 * 4122 * 5082 4998 6700 * 4296 6298 * 3871 1588 4127 2939 5803 4122 3490 * 5946 77 71 4376 * 792 1243 0 * 4028 1811 1000 S 78 5445 3534 5318 * * 1058 * * 4747 4025 * 3608 * 5179 3950 3154 * * * * 78 221 2817 * 120 3649 * * 4047 2233 0 G 79 3685 * 5533 6943 * 1339 6218 * 4605 5648 * 3336 5808 6599 4326 2379 5222 5235 * * 79 90 4045 * 1075 928 * * 4047 2186 0 F 80 * * 3104 * 5675 3473 2462 4861 3943 * 6396 3364 7354 5235 2403 4145 4658 6025 * 4297 80 178 3107 * 0 * * * 4047 2152 0 R 81 * * * * * * 4982 * * * * * 5008 4831 272 4022 * 6362 * * 81 31 5538 * 0 * * * 4050 1000 0 N 82 * * 3782 * * 599 * * * * * 3159 6202 6642 4277 3646 * * * * 82 14 6698 * 1000 1000 * * 4059 1000 0 S 83 962 * 4867 4733 * 3526 * * 5697 * * 6754 2973 * * 3345 3766 * * * 83 0 * * * * * * 4059 0 0 D 84 6243 * 2691 3116 * 5758 5988 * 2584 5063 * 6537 * 4349 1479 * 6202 5766 * 4829 84 39 5216 * 2000 415 * * 4059 1223 0 R 85 * * * * * * 4865 * * * * * * * 50 * * * * * 85 0 * * * * * * 4059 0 0 I 86 * * * * 4259 * * 775 * 1752 6545 * * * 6256 * * 4550 * * 86 0 * * * * * * 4059 0 0 L 87 * 5960 * * * * * 2147 * 2494 * * * * * * * 784 * * 87 33 6046 7006 2716 238 * * 4059 1256 0 Y 88 5856 4144 * * 2653 7195 * 5128 5837 7040 * * * * 5755 5905 2006 3136 5985 1771 88 51 4837 * 1091 914 0 * 4056 1630 1000 S 89 4547 * 4188 7094 * 1236 * * * * * 4281 6854 * * 1481 5028 5540 * * 89 108 3788 * 752 1300 * * 4059 2456 0 S 90 4388 * 3422 4382 * 2371 7047 5684 3933 * * 2086 6046 4459 4281 3052 4131 * * * 90 17 6458 * 0 * * * 4059 1000 0 D 91 5720 * 893 5442 * 3104 6905 * 6336 * * 4043 6240 3728 * 3491 5289 6831 * 6647 91 109 3910 7267 939 1064 * * 4059 2351 0 W 92 4809 6532 4271 7147 6630 760 * 6979 * * * * 4382 6203 4324 4066 3971 * 5192 5387 92 140 3432 * 2220 348 0 * 4060 2427 1000 L 93 4227 * 4050 2274 * * * 6060 4080 1920 4865 4249 * 2827 5489 4121 6488 5482 * * 93 236 2731 * 1776 498 * * 4059 2843 0 I 94 4314 3808 * 4900 6951 * 5237 2026 6385 4101 5206 7006 * 4926 2965 * 5306 2937 3241 4758 94 60 4615 * 0 * * * 4059 1568 0 Y 95 * * * * 2937 * * * * * 6340 * * * * * * * 3352 398 95 0 * * * * * * 4059 0 0 K 96 * * * * 5085 7046 * 4559 4243 3437 * * * * * 6158 * 2961 5163 725 96 0 * * * * * * 4059 0 0 T 97 * * * * * * * * * * * * * * * 2697 242 * * * 97 0 * * * * * * 4059 0 0 T 98 2897 * 2877 4212 * 3517 6187 * 4788 4378 * 5312 3609 5357 5908 3268 2451 5111 6552 5988 98 0 * * * * * * 4059 0 0 D 99 * * 138 * * * * * * * * 3951 * * * 5955 6549 * * * 99 0 * * * * * * 4025 0 0 A 100 6168 * * * * * 66 * * 5015 * * * * * * * * * * 100 0 * * * * * * 3929 0 0 Y 101 * * * * 6049 * * * * * * * * * * * * * * 22 101 0 * * * * * * 3929 0 0 Q 102 2519 * 4335 1880 * 4910 * * 2686 * * 4582 * 3490 3263 4579 4972 7180 * * 102 0 * * * * * * 3929 0 0 T 103 * * 3810 * * * 3827 * * * * 4500 * * * 1344 1251 * * * 103 16 6470 * 2322 322 * * 3929 1000 0 F 104 * * * * 61 * * * * * 6236 * * * * * * * 5168 * 104 0 * * * * * * 3873 0 0 T 105 * 3074 * 3253 * 6468 * 3566 3874 5034 * 5142 * 3458 3018 6288 2466 3093 6821 5692 105 0 * * * * * * 3930 0 0 K 106 5456 * * 1893 6240 * * * 2524 6408 * * 5932 4331 1377 * 5167 5046 * * 106 0 * * * * * * 3914 0 0 I 107 * * * * 4809 * * 1050 * 3255 2851 * * * * * * 2072 * * 107 0 * * * * * * 3886 0 0 R 108 * * * 2252 * * * * 2379 * * * * 2403 1291 * * * * * 108 0 * * 0 * * * 3448 0 0 //