HHsearch 1.5 NAME d2bbya_ FAM FILE d2bbya_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2bbya_.a3m DATE Wed Mar 10 06:13:04 2010 LENG 69 match states, 69 columns in multiple alignment FILT 48 out of 52 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4304 1.2540 SEQ >ss_dssp CTHHHHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHCCEECCTTCCCEECCCCSSCCCC >sa_dssp EDEEDCDEABDCADDABEEEDDBCCEDADEDBECEDECACEBAEEBBDCCEDEEEDDCBCBCEEDBEDE >ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHCC >ss_conf 975898999999999953178878999999731829999999999995515888688643488884079 >Consensus rxRxxxxelxdxlFxxFexxxywslKxLxxxtxQPxxyLkeiLxeIaxxxkxGxxxxxweLKpEykxxx >d2bbya_ RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQ >UniRef50_Q5K8M0(230-294:336) Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5K8M0_CRYNE E=4e-17 s/c=1.37 id=32% cov=96% -ARLERHELTDRIFQCFRDHPYWALGALKQTLEQPDAWLREVLRDVAEQVKEGQYQGYWQLKPVWR--- >UniRef50_D2UXQ5(216-280:300) Transcription initiation factor IIF, beta subunit n=1 Tax=Naegleria gruberi RepID=D2UXQ5_NAEGR E=2e-15 s/c=1.29 id=38% cov=96% RVREDGEKIKAKIFSLYKERQYWKMEELANITDQPTQHVKTILSSICVYNKSGEYKGYYQLKPEY---- >UniRef50_P41896(293-359:400) Transcription initiation factor IIF subunit beta n=12 Tax=Saccharomycetaceae RepID=T2FB_YEAST E=2e-17 s/c=1.35 id=35% cov=99% --RMPKKEILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLK >UniRef50_B6AB82(195-255:258) Putative uncharacterized protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AB82_9CRYT E=3e-09 s/c=1.03 id=28% cov=87% ------ESLKEHIFKIFEEKgsEGVSIKEIEDRTLQPKQLVKKVVEEIAYQTARGGRRHIWYLKSQY---- >UniRef50_Q9FT55(294-371:376) Putative uncharacterized protein T25B15_40 n=4 Tax=Magnoliophyta RepID=Q9FT55_ARATH E=4e-16 s/c=1.10 id=37% cov=97% RTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEvcvaygkvylvqQFLKDLLKDLCIYNNKGSNQGTYELKPEYK--- >UniRef50_C9SLS8(273-341:368) Transcription initiation factor iif n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SLS8_VERA1 E=4e-16 s/c=1.24 id=36% cov=100% -TRMDETELREALLDAFtNRFQYWKMSVLKATFNQPEAYLRQELEKIAVMNRSGPHSNEWEIKPEFKLIQ >UniRef50_A2DDQ7(183-244:245) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2DDQ7_TRIVA E=4e-09 s/c=1.01 id=21% cov=91% --RLSVDDLRARIFEQFKRSDEWSIQDLVKVIQQDQGYIADVIRNIANYDST---TKTYRLKDAYKN-- >UniRef50_B7G166(234-312:312) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G166_PHATR E=3e-14 s/c=1.01 id=33% cov=101% RQFAPDQAVRSVVFELFGQQRYWTVKDLKAAavaggatdmgSRKAETDLRELLRDIGDYHRSGDHKNMWELRSEFQQQK >UniRef50_B0EN82(153-219:219) Putative uncharacterized protein n=2 Tax=Entamoeba RepID=B0EN82_ENTDI E=5e-09 s/c=0.93 id=30% cov=97% RVRMNETELTDKILSMFKIKPTYTFTMLNLELKQPEQYLKEQLKKICDLVQSPTSSMKeYQLKKDYQ--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 2480 * * * * * 285 * * * * * 1 0 * * * * * * 3305 0 0 A 2 1330 * * 2677 * * * 4750 * * * * * 4132 * 5376 2566 2655 * * 2 0 * * * * * * 3879 0 0 R 3 * * * * 4368 * * * 5004 * * * * * 120 * * * * * 3 0 * * * * * * 4019 0 0 A 4 2592 * 5029 4832 * * * 3399 * 2084 1824 * * * 3559 * * 5319 4464 * 4 0 * * * * * * 4095 0 0 D 5 5674 * 1954 2529 * 5494 * * * * * 4697 1571 * * 2911 5741 * * * 5 0 * * * * * * 4095 0 0 K 6 * * 4463 2107 * 4832 * * 1689 * * * * 4753 1766 * * 4432 * * 6 0 * * * * * * 4095 0 0 Q 7 * * 2655 2279 * 5970 5175 * 4163 * * 2014 4545 3763 4591 4826 3399 * * * 7 0 * * * * * * 4241 0 0 H 8 2938 * 2849 1265 * * 4679 * 4893 5504 * 5017 * 3258 * 3991 * 5542 * * 8 0 * * * * * * 4320 0 0 V 9 5272 * * * * * * 3154 * 771 4679 * * * * * * 2078 * * 9 0 * * * * * * 4366 0 0 L 10 * * * 3216 * * * 4063 2683 1377 3835 * * * 2645 * 4016 * * * 10 0 * * * * * * 4366 0 0 D 11 3420 * 952 2722 * 4647 * * * * * 3163 * 5412 * 3986 * * * * 11 0 * * * * * * 4366 0 0 M 12 2995 * 5412 * * * 5117 3440 3514 2711 2496 5000 * 4410 3458 5866 * 3199 * 5856 12 0 * * * * * * 4366 0 0 L 13 * * * * * * * 1418 * 1057 4222 * * * * * * 3450 * * 13 0 * * * * * * 4375 0 0 F 14 4760 * * * 304 * 4799 5007 * 3932 5618 * * * * * * * * * 14 0 * * * * * * 4375 0 0 S 15 4682 * 4961 2685 * 3594 4896 * 2163 * * 4464 * 2967 4832 2149 * * * * 15 0 * * * * * * 4375 0 0 A 16 1615 2912 * * * * 5646 4035 * 1639 4903 * * 3802 * * * * * 4903 16 0 * * * * * * 4375 0 0 F 17 * * * * 42 * * * * * * * * * * * * * * 5114 17 47 4961 * 0 * * * 4375 1000 0 E 18 5007 * 3584 1007 * 4477 * * 3281 * * 4961 * * 2695 4224 * * * * 18 0 * * * * * * 4375 0 0 K 19 5311 * 4626 1843 * * * 4903 1518 * * * * 3776 2322 * * * * * 19 0 * * * * * * 4375 0 0 H 20 * * * 5311 3765 * 1906 * 3405 * * * * 2892 3604 4623 5332 * 5902 2054 20 91 4035 * 1000 1000 * * 4375 1179 0 Q 21 * * 3705 2474 * * * * 3618 * * 5660 2187 1761 4477 3598 * * * * 21 0 * * * * * * 4375 0 0 Y 22 * * * 4623 4321 4035 3604 * * 4217 * 4222 * * * 4003 4903 * * 829 22 0 * * * * * * 4375 0 0 Y 23 * * * * 5007 * * * * 5311 * * * * * * * 4035 639 2055 23 0 * * * * * * 4375 0 0 N 24 4592 * 5311 * * 5332 5470 * 4036 * * 3770 3741 * 5637 1344 1928 * * * 24 0 * * * * * * 4375 0 0 L 25 * * * * 3782 * * 2108 * 1383 2410 * * * * * * 3013 * * 25 0 * * * * * * 4375 0 0 K 26 * * 5007 5114 * 5244 * * 576 * * * * 4043 3103 4961 4903 * * * 26 0 * * * * * * 4375 0 0 D 27 2880 * 1864 2401 * 3708 * * 5902 5675 4903 * 5332 3522 5856 5261 3907 4961 * * 27 0 * * * * * * 4375 0 0 L 28 * * * * 5638 * * 3448 * 171 * * * * * * * * * * 28 0 * * * * * * 4375 0 0 V 29 3091 * * 3537 * * * 4828 2390 5875 * 4227 * 3641 2215 * * 2290 * * 29 0 * * * * * * 4375 0 0 D 30 2878 * 2464 3076 5109 4912 6052 * 3898 3329 * 5114 * 2936 * 4151 4687 4454 * 5646 30 0 * * * * * * 4375 0 0 I 31 4023 * * 2347 3513 * 5646 2687 3041 3751 * * * * 2706 * 4096 4123 * 6148 31 41 5155 * 3322 152 * * 4375 1000 0 T 32 * 4730 * * 4961 * * 3203 * 2662 * * * * * 3359 857 6148 * * 32 49 4903 * 1000 1000 * * 4375 1000 0 K 33 5726 * 3600 4277 * 4003 * * 2010 5093 4980 4094 4760 2249 2675 6259 * * * * 33 0 * * * * * * 4375 0 0 Q 34 * * * * * * * * 4065 4903 * * * 141 * * * * * * 34 0 * * * * * * 4375 0 0 P 35 5155 * 4623 * * * * * * * * * 148 * * 5109 * * * * 35 0 * * * * * * 4375 0 0 V 36 4252 * 4533 1192 * * * 4047 3537 5439 * * * 4623 5007 * 4195 2705 * 5856 36 29 5675 * 3585 126 * * 4375 1000 0 V 37 1726 * 4936 * 5109 4623 4980 * 4903 * 5261 5311 * 2126 * 3549 4538 3040 * * 37 0 * * * * * * 4375 0 0 Y 38 5004 * 5146 4902 3065 * 3561 4979 * 4340 * * * * * * * 5101 3651 963 38 0 * * * * * * 4377 0 0 L 39 * * * * * * * 3689 * 385 * * * * * * 4902 3020 * * 39 0 * * * * * * 4377 0 0 K 40 4621 * * * * * * * 759 * * * * 3413 1993 * 5428 * * * 40 0 * * * * * * 4377 0 0 E 41 4558 * 2798 906 * 5251 * * 4033 * * * * 3464 * 6034 3523 * * * 41 0 * * * * * * 4377 0 0 I 42 5004 5861 * 4960 * * * 1618 * 4386 5720 4931 * 4900 * 6054 2863 1699 * * 42 0 * * * * * * 4377 0 0 L 43 * * * * * * * 4066 * 305 5251 * * * * * * 3256 * * 43 0 * * * * * * 4377 0 0 K 44 5494 * 3974 2017 * 5080 5251 * 2312 5896 * 3774 * 5630 2529 3236 5615 * * * 44 0 * * * * * * 4377 0 0 E 45 * * 2220 1327 * 5896 * * 2289 * 5723 4621 * * * 3240 * * * * 45 0 * * * * * * 4377 0 0 I 46 * * * * * * * 515 * 3754 5859 * * * * * * 2258 * * 46 0 * * * * * * 4377 0 0 G 47 708 2027 * * * 2809 * * * * * * * * * * * * * * 47 0 * * * * * * 4377 0 0 V 48 * * 2556 4659 4481 * 4255 3078 * 5080 * 3212 * 3972 * * 4939 1682 * 5089 48 0 * * * * * * 4377 0 0 Q 49 * * * * 4337 * * * * 1256 4960 * * 3092 * * * 5277 * 1488 49 0 * * * * * * 4377 0 0 N 50 4279 * 3548 5004 * * 2318 6054 * * * 1348 * * * 5101 4008 2920 * * 50 0 * * * * * * 4377 0 0 V 51 5089 * * * * 4979 5851 6252 1422 6230 6173 4212 * 4900 1993 4621 3106 6324 * * 51 0 * * * * * * 4377 0 0 K 52 4676 * 5101 5242 * * 5428 4902 1855 * * 5851 * * 2430 1695 4048 * * * 52 200 5251 3275 0 * * * 4377 1000 0 G 53 * * * * * 340 * 5288 5076 * * 3980 3451 * * * * * * * 53 0 * * * * 551 1655 4196 0 1993 I 54 5010 * 3439 3112 * 4000 * 6287 * * * 5423 1301 5208 3907 4110 3820 4864 * * 54 0 * * * * * 0 4258 0 1000 H 55 * * * * 2885 * 1527 * * 4562 * 2703 * * 4000 4856 * * * 2153 55 0 * * * * 0 * 4258 0 1000 K 56 2266 * * * * * 5307 * 1831 * 4931 * * 3642 2584 3465 3340 5896 * * 56 0 * * * * * * 4377 0 0 N 57 * * * * 5861 2176 3534 * 4621 5195 3844 1490 * 5101 * 2916 5658 * * * 57 0 * * * * * * 4377 0 0 T 58 * 5644 * 4960 5324 * 4210 4033 2963 2940 2501 4242 * 5658 6248 4784 2358 * * 4175 58 49 4900 * 0 * * * 4377 1000 0 W 59 * * * * 5324 * * * * * * * * * * * * * 779 1351 59 0 * * * * * * 4377 0 0 E 60 * 4736 * 1194 * 4126 5000 * * * * 6024 * 3129 4617 3046 4526 4657 * 4007 60 0 * * * * * * 4380 0 0 L 61 * * * * * * * 4952 * 109 * * * * 5326 * * 6008 * * 61 0 * * * * * * 4380 0 0 K 62 * * * * * * * * 230 * * * * 4535 3960 5861 5458 * * * 62 0 * * * * * * 4380 0 0 P 63 3602 * 3324 3741 * * * * 4393 * * 5272 797 5779 5831 4099 * * * * 63 0 * * * * * * 4380 0 0 E 64 4109 * 4148 499 * * * * * * 5326 5318 * 3299 * * * 5229 * * 64 0 * * * * * * 4380 0 0 Y 65 4570 * * * 2369 * * * * * * 5638 * * * * * * 4031 550 65 0 * * * * * * 4380 0 0 R 66 * 5265 * * * * * * 1189 * * * * 3289 1297 * 5255 * * * 66 0 * * * * * * 4185 0 0 H 67 * * * * * * 1010 * 3689 3506 * 2609 * 3317 * * * * * 3764 67 0 * * * * * * 3297 0 0 Y 68 * * * * * * * 3214 * 3316 * * * 3002 * 3207 * * * 840 68 0 * * * * * * 2972 0 0 Q 69 * * * * * * * * 857 * * * * 1159 * * * * * * 69 0 * * 0 * * * 2897 0 0 //