HHsearch 1.5 NAME d2b5dx1 FAM FILE d2b5dx1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2b5dx1.a3m DATE Tue Mar 9 02:56:40 2010 LENG 114 match states, 114 columns in multiple alignment FILT 38 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4259 -0.0525 SEQ >ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCGGGTSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHSCS CTTCCGGGGGSCCC >sa_dssp EEEDBEECCDDADDCACEBAEECDECEDECBCCAABAAABAADBBDCEDCEDCEDECCDDCECCECBDDAAEBACCACDBBEDEECDDECADDBCEDBDD DEECDACDCCEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC CCCCCHHHHHHHCC >ss_conf 9424439999999999999996038845089999999999999999701489973798448999999999999999999951388899999999964489 81105877434129 >Consensus xNdWmyxxlhxaexxmxxlxxxxxxxxxxlxxRxLnQaaRElLLaqSSDWxFiixtgtxxxYAxxRxxxHlxxFxxLxxxlxxxxvdxxxLxxlExxdni Fpxidyrxfxxxxx >d2b5dx1 TNDWIYRHLHEMIERMIDLSKKYYNSSDPLVERVLNQMLRELFLAQSSDWAFIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAI FPEINFRVMARDVI >UniRef50_B2S2V5(415-525:526) Putative uncharacterized protein n=2 Tax=Treponema pallidum RepID=B2S2V5_TREPS E=4e-35 s/c=1.33 id=32% cov=96% -NDWMHPAIQKTTERMIDLTERFAHDTG-FRERLLNMAARDVLLCQSLFWPLLGNHCRYPEYAASECADHLKAFTRVYEALGSGEVSAQWLMRRERELPL FSEINFRFFSK--- >UniRef50_A9AZN9(534-642:649) Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZN9_HERA2 E=2e-34 s/c=1.34 id=33% cov=95% --EWMWPIIHAAEKRMEGLVASYPQADGALAE-ALAQTARELLLLQSSDWPFLVTTGQAQDYATKRFNEHVDRYNQLADAIEANDVGlmAELTASFNELD NPFPTIDYHVFA---- >UniRef50_C9RMU9(414-536:545) Glycoside hydrolase family 57 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMU9_FIBSS E=2e-17 s/c=0.73 id=33% cov=89% ---WMndevafqYPMFFRMRKMMDDLKSRISKVAGktsgsavgntrsskaTMVKRFLAQMARELVLFQASDWAFMIHNNSAADYARARLNGHYENVCALY KEAVKANPDTKLLKKLEQKNNLFPWI---------- >UniRef50_C0GDS5(417-527:948) Glycosyl transferase group 1 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS5_9FIRM E=1e-29 s/c=1.17 id=33% cov=97% -NDWLYPPAHQAETCLIRQATAHPDPDDA-QKRALTQMGRELLLVQSSDWAFMLNAGTTDNYARSRFNCHLENFRRLDHMLSEGRVLLDEVTAMEtDASG LFPGMHTRAYAPE-- >UniRef50_UPI0001C42A12(415-521:936) hypothetical protein BpOF4_13925 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42A12 E=3e-28 s/c=1.18 id=32% cov=95% -NDYMYKHLHRIEQDLAAIV-ALHSQPTELEKRVIKQMIREWMLAVSSDWAFIVDGDSAVEYAKERFHLHVDRFDRLKNQMFTKQLTDAWVEKQESAFPF LSSIDENVF----- >UniRef50_Q2B5X0(280-368:771) Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B5X0_9BACI E=8e-12 s/c=0.80 id=23% cov=72% ------------ERKLEKIAESLMNSREL---RIYKQMAREWMF-------FLNTLGAHPDY-RGESENHAEAFRKLEKLFAAGEGGEAFLEELEVKSPI LAAI---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 1014 986 * * * 1 0 * * * * * * 2791 0 0 N 2 * * * * * * * * * * * 0 * * * * * * * * 2 0 * * * * * * 3964 0 0 D 3 2932 * 812 2332 * * 4100 * * 4554 * * * * * * * * * * 3 0 * * * * * * 4252 0 0 W 4 * * * * 4805 * * * * * * * * * 5198 * * * 218 3699 4 0 * * * * * * 4335 0 0 I 5 6055 * * * * * * 1652 * 3047 1232 * * * * * 4660 3633 * * 5 62 4562 * 2807 222 * * 4386 1000 0 Y 6 * * * * 4639 * 4249 * * 5014 * * * * * * * 4089 2050 796 6 0 * * * * * * 4418 0 0 R 7 5355 * * 3928 * * * * 3509 5614 * * 1034 * 1674 * * * * * 7 0 * * * * * * 4418 0 0 H 8 4249 * * 3931 * * 1283 4818 3606 3453 4592 * 3859 4828 4639 * * * * 3715 8 0 * * * * * * 4418 0 0 L 9 3876 * * * 4607 * * 1630 * 1156 5025 * * * * * 5310 5113 * 4869 9 51 * 4840 * * * * 4472 0 0 H 10 * * * * 4556 * 755 * * * * * * 3437 * * 3477 4467 * 2864 10 0 * * * * 0 * 4442 0 1000 E 11 4925 * 4092 2283 * * 4979 * 2167 * 4281 * * 4069 1567 * * * * * 11 40 * 5199 * * * * 4568 0 0 M 12 681 * * * * * * 3763 * 5098 2296 * * * * 5584 4356 * * * 12 0 * * * * 0 * 4639 0 1000 I 13 2474 * * 1045 * 3675 * 4341 * * * * * * 4705 5189 3086 5373 * * 13 0 * * * * * * 4737 0 0 E 14 5007 * 5114 1949 * 5293 3825 5189 3348 5433 5202 3940 * 3732 2413 4316 5029 * * * 14 0 * * * * * * 4737 0 0 R 15 3039 5029 3658 4384 * * * 5096 3103 3978 4705 * * 4258 1432 * 5311 5321 * * 15 0 * * * * * * 4737 0 0 M 16 5096 * 5318 * 3609 * * 5373 * 2319 1001 * * 4539 5007 * * 3931 * * 16 0 * * * * * * 4737 0 0 I 17 3534 * 4705 3926 * * 5189 1929 5192 3355 5007 * * * 4470 * 4423 2045 * 5096 17 0 * * * * * * 4737 0 0 D 18 2948 * 2100 2314 * 4066 * * 2642 * * * * 3997 3211 * 5433 5475 * * 18 0 * * * * * * 4737 0 0 L 19 2539 * 5202 * * 5007 * 3079 * 909 * * * 5029 5189 * * 4045 * * 19 0 * * * * * * 4737 0 0 S 20 1558 4390 * * * * * 4248 3988 4086 * * * * * 3840 3470 1846 * * 20 180 * 3092 * * * * 4737 0 0 K 21 3119 * 5315 3417 * 4642 5033 5101 3542 5059 * 4781 * 3648 3038 2889 3806 3235 * * 21 105 * 3827 * * 0 * 4634 0 2209 K 22 1925 * 3756 3346 * * * * 3721 * * * * 4091 1844 3294 5467 5231 * * 22 180 * 3090 * * 512 1744 4689 0 1625 Y 23 4836 * * * 2059 4407 4812 4538 * 3003 3662 3659 * 4341 * * * * * 1905 23 83 4985 5375 0 * 293 2443 4622 1000 2488 Y 24 3245 4176 * 4171 3105 * 3189 * 5007 * 4764 5334 2193 * 4631 4648 * * * 2589 24 0 * * * * 879 1132 4720 0 1504 N 25 * * 3279 4052 * 3992 3890 * 3199 5609 * 2352 2543 5025 3725 3275 * * * * 25 145 5408 3790 1000 1000 * 0 4716 1000 1000 S 26 2153 * 2846 4408 * 5097 4920 * 5290 * * 4003 3856 2618 4835 3388 * 3711 * * 26 0 * * * * 972 1028 4706 0 2092 S 27 1807 * 2412 5610 * * 4737 * 3575 * * * 2706 4157 4764 4214 3772 * * 6485 27 75 5333 5276 1000 1000 0 * 4703 1000 1510 D 28 * * 1908 2537 * 1447 * * * 5252 * 6521 * * * * 3137 * * 4519 28 279 4658 2876 3907 100 * 0 4717 1000 1000 P 29 2870 * 3333 3083 * 2512 * * 5007 4541 * 4041 4107 5345 * 3253 3631 3886 * * 29 187 * 3042 * * 753 1298 4509 0 2668 L 30 * * 4445 5182 3580 * * 2926 * 793 4437 * * 4197 * * * * * 4890 30 45 * 5035 * * 1237 796 4482 0 2754 V 31 4062 * * 3324 5343 4914 * 3511 2671 * * * 4058 3248 2186 4893 4312 3864 * * 31 76 * 4289 * * 1941 435 4640 0 2363 E 32 * * 3997 1288 * 4020 4942 4909 2001 * * 5018 * * 4079 * * * 5489 4705 32 81 * 4190 * * 298 2423 4653 0 2551 R 33 * * 5136 * * 5307 * * 4224 * * * * 3717 292 * * * * * 33 0 * * * * 0 * 4768 0 1890 V 34 1303 5194 * * 4858 * * 3149 * 3068 * * * * * * 4893 1903 * * 34 0 * * * * * * 4797 0 0 L 35 * * * * 4279 * * 2953 * 405 * * * * * * * 5108 * 4830 35 0 * * * * * * 4797 0 0 N 36 3996 * 4336 5157 * 5188 * * 2035 * * 1156 * 5169 4300 * 4035 * * * 36 0 * * * * * * 4797 0 0 Q 37 4710 * * * * * * * * * 3738 * * 173 * * * * * * 37 0 * * * * * * 4824 0 0 M 38 1066 * * * * * * 4274 * 3186 1578 * * * * * 5279 * * * 38 0 * * * * * * 4824 0 0 L 39 699 5187 * 5418 * 3775 * 3318 * 4401 4304 * * * * * * 4010 * * 39 0 * * * * * * 4824 0 0 R 40 * * * * * * * * 4908 * * * * * 49 * * * * * 40 0 * * * * * * 4824 0 0 E 41 * * 4586 143 * * 5291 * * * * * * * * 5198 * * * * 41 0 * * * * * * 4824 0 0 L 42 * * * * 4539 * * * 5187 593 * * * * * * 5366 3220 3195 5291 42 0 * * * * * * 4824 0 0 F 43 * * * * 5436 * * * * 504 2448 * * * * * * 3501 * * 43 0 * * * * * * 4824 0 0 L 44 * * * * 4857 * * 5164 * 110 6544 * * * * * * * * * 44 51 * 4857 * * * * 4824 0 0 A 45 775 4466 * * 4846 * * * * 2103 * * * * * 4360 5316 5105 * * 45 0 * * * * * 0 4765 0 1000 Q 46 * * * 2435 * * * * * * * * * 679 * * 4097 2923 * * 46 0 * * * * * 0 4758 0 1000 S 47 2158 * * * * * * * * * 4979 * * * * 426 * * * * 47 0 * * * * * 0 4758 0 1000 S 48 * * * * * 4524 * * * 4459 * * * * * 255 4870 4685 * * 48 0 * * * * * 0 4758 0 1000 D 49 * * 127 * 4459 * * * * * * * * * * * * * * 4685 49 0 * * * * * 0 4758 0 1000 W 50 * * * * * * * * * * * * * * * * * * 0 * 50 101 * 3885 * * * 0 4758 0 1000 A 51 1458 * 4533 * * * * * * * * * 1223 3938 * 3780 5256 * * * 51 0 * * * * 627 1504 4651 0 2089 F 52 * * * * 312 * * * * 2736 * * * * 4502 * * * * * 52 0 * * * * 0 * 4769 0 1000 I 53 * * * * * * * 1363 * 1632 2272 * * * * * * * 4526 4706 53 0 * * * * * * 4818 0 0 M 54 * * * 5014 * 4581 * 1891 * 2133 2400 4810 * * * * 4901 2547 * * 54 0 * * * * * * 4818 0 0 T 55 * * 2888 5427 * 4526 4883 * 3378 4823 * 3207 * 5179 3880 2965 1938 * * 4646 55 0 * * * * * * 4818 0 0 T 56 2590 * 3852 * * 3298 4581 * 5363 4810 * 3615 * * 5208 * 1210 5625 * * 56 0 * * * * * * 4818 0 0 R 57 * 4581 3783 * * 970 * * * * * 3688 3150 3181 4400 5208 * * * * 57 0 * * * * * * 4818 0 0 T 58 4810 * * 5209 * 3287 * * * * * * * 2797 3697 2980 1038 * * * 58 0 * * * * * * 4818 0 0 S 59 1370 * * * * * 4810 * * 4706 2786 4823 * * * 3629 2285 * 5014 4581 59 64 * 4526 * * * * 4818 0 0 V 60 2473 * 3925 5365 * 5063 * * 2721 * * * 3656 4038 * * 4301 1485 * * 60 0 * * * * 0 * 4737 0 1000 Q 61 4260 * 1882 1548 * * * * * * * 5150 3571 2853 5014 4246 * * * * 61 0 * * * * * * 4818 0 0 Y 62 * * * * 4706 4823 * * * 4372 * * * * * * * * * 188 62 99 * 3909 * * * * 4818 0 0 A 63 148 * * 4757 * 4044 * * * * * * * * * * * * * * 63 0 * * * * 0 * 4723 0 1599 E 64 2870 * * 2769 * * * 3691 3003 5014 * 4526 * * 2328 5202 3372 3481 * 5185 64 0 * * * * * * 4818 0 0 N 65 2859 5668 5014 2184 * 4161 * * 5272 * 5407 3820 * 5185 2113 3366 * * * 4068 65 0 * * * * * * 4818 0 0 R 66 * * * 3691 * * * * * * * * * 4033 215 * * * * * 66 0 * * * * * * 4818 0 0 T 67 3528 3732 * * 1736 * * 3410 * 3323 * * * * 4526 4810 3090 3010 * 5427 67 45 * 5014 * * * * 4818 0 0 K 68 3797 * 5334 2253 * * 2941 * 3022 5069 * 2834 * 5141 3426 4485 5173 4640 4787 * 68 0 * * * * 0 * 4782 0 1000 L 69 5209 5150 2789 1628 5152 4883 * * 5407 3002 4823 4810 * * 4372 4653 3638 5220 * * 69 0 * * * * * * 4818 0 0 H 70 * * * * * * 0 * * * * * * * * * * * * * 70 0 * * * * * * 4818 0 0 I 71 3181 * * * * * * 3459 * 1068 * * * * * 5111 4238 2485 * 4026 71 45 * 5014 * * * * 4818 0 0 K 72 5103 * 3705 3302 3317 4662 5331 * 3450 5137 5621 2947 * 3925 3205 4347 3114 5689 * * 72 0 * * * * * 0 4782 0 1000 R 73 2489 * 5069 * * * 5247 * 4485 3733 * 2384 * * 1272 4640 * * * * 73 0 * * * * * 0 4782 0 1000 F 74 5172 4787 * * 336 * * * * * * * * * * * 5331 3973 * 4171 74 0 * * * * 0 * 4782 0 1000 L 75 5257 4883 3072 * 3937 * 4145 * 5185 3249 5152 3567 * 5100 2605 * 3138 * 3017 5414 75 0 * * * * * * 4818 0 0 N 76 2964 * 4021 3299 * * 4093 * 2624 5014 * 5427 * 5272 2079 5668 4194 5284 4526 5179 76 0 * * * * * * 4818 0 0 L 77 4706 * * * * * * 3805 * 359 4823 * * * * * * 3732 * * 77 81 5185 5220 1585 585 * * 4818 1000 0 Y 78 2406 4286 5102 3439 5177 * 5638 5354 3733 4214 4509 * * 5175 5237 4259 * 4453 * 2050 78 35 * 5397 * * 0 * 4791 0 1000 D 79 * * 2395 1728 * 5335 5122 * 3824 * 5154 3273 * 4059 4282 3545 5207 * 5148 * 79 0 * * * * * 0 4804 0 1000 Q 80 2034 * 4152 3946 * 4354 * * * 2526 2713 * * 2492 * 4216 * 5154 * * 80 0 * * * * * 0 4804 0 1000 L 81 3339 * * 4991 3401 * * 2953 * 1203 3714 * * * * * * 3060 * 6012 81 0 * * * * * 0 4804 0 1000 V 82 4034 * 5399 2229 4353 3121 * * 4475 2920 * 5359 4490 5153 4376 3633 * 3496 * 4422 82 120 3649 * 1086 919 * 0 4804 1690 1000 S 83 3046 * * 3701 * 5383 3012 5624 4864 4991 * 4218 * 3720 3001 3003 2639 5142 * * 83 0 * * * * 0 * 4804 0 1000 G 84 4883 * 2817 3973 * 1593 * * 2491 * * 3504 5209 * * 2880 * * * * 84 64 4526 * 1585 585 * * 4818 1000 0 R 85 4056 * 5272 2895 * 4339 * 4396 3466 * 4823 3316 3382 4371 2856 3539 4047 5185 * * 85 41 5152 * 0 * * * 4818 1000 0 I 86 5427 * * * 3619 4810 * 2440 5185 3032 5111 * 3792 * 5363 * 5014 1437 * * 86 93 4003 * 1585 585 * * 4818 1519 0 D 87 4526 * 813 4388 * 3396 * * * 5150 * 4285 * * 5284 3455 4371 * * * 87 38 5272 * 1000 1000 * * 4818 1000 0 E 88 2743 * 4371 2506 3333 * * * 5407 4080 * * 5427 3187 * 4417 2693 3590 5220 * 88 72 5363 5362 0 * * * 4818 1000 0 E 89 3146 * 2820 2677 4996 4488 * * 2362 5063 * * * 2725 3794 3938 * * * * 89 0 * * * * * 0 4796 0 1000 M 90 4279 * * 3378 2302 * * 5272 5352 2784 5366 * * * 3115 * 4804 5142 2145 5374 90 0 * * * * * 0 4796 0 1000 L 91 * * * * 4499 * * 5362 * 238 * * * * * * 5248 4120 * * 91 0 * * * * 0 * 4796 0 1000 R 92 2162 * 5192 1780 * * * 4885 3420 * 3802 * * 5118 3861 3198 4248 * * * 92 0 * * * * * * 4778 0 0 Y 93 2470 * 3282 3029 * 5097 * * 2427 * * 4490 * 3616 3482 5263 4788 * 5302 3719 93 37 5289 * 0 * * * 4778 1000 0 Y 94 4364 4374 * * 5263 * * 2624 * 1337 4103 * * 5329 3098 * * 4466 5289 4364 94 0 * * * * * * 4778 0 0 E 95 * 5192 * 455 * * * * 3969 5074 * 4276 * 3793 5281 * * * * * 95 42 5131 * 0 * * * 4778 1000 0 W 96 2535 5191 3534 2109 * 5281 * * 3590 5651 * * * 4856 3864 2789 * 4769 3861 * 96 0 * * * * * * 4778 0 0 T 97 3010 * 5014 2700 * * 5012 4788 1996 3281 5651 * * 5302 2996 5390 3719 * * * 97 0 * * * * * * 4778 0 0 D 98 * * 835 5302 4196 * 5625 * * 4536 * 2925 * * * 3459 * * * 3763 98 0 * * * * * * 4778 0 0 A 99 5382 * 5346 * * 4208 * * * * * 1066 1830 * * 2855 * * * * 99 0 * * * * * * 4778 0 0 I 100 4212 * * * 4167 * * 1422 * 1802 * * 2590 * * * * 3959 * * 100 0 * * * * * * 4763 0 0 F 101 * * * * 141 * * * * 3428 * * * * * * * * * * 101 0 * * * * * * 4763 0 0 P 102 3634 * * 4967 * 3966 * * 4601 * * 4990 814 * * 2458 * * * * 102 0 * * * * * * 4702 0 0 E 103 3849 * 2501 2147 4974 4339 5491 * 4985 * * 4346 * * 5308 3442 3164 4894 4628 4605 103 0 * * * * * * 4676 0 0 I 104 5007 * * * * * * 781 * 1654 3859 * * * * * * * * * 104 53 4790 * 1585 585 * * 4676 1000 0 N 105 * * 744 * * * 4606 * * * * 1466 * * * * * * * * 105 0 * * * * * * 4423 0 0 F 106 4867 * * 3628 2228 * * * * 4582 * * 4812 * * * 4533 * * 860 106 0 * * * * * * 4377 0 0 R 107 * * 4582 * * * 4027 * 3840 5202 * 4598 * 4533 551 * 4920 * * * 107 0 * * * * * * 4377 0 0 V 108 4377 * 3723 * 3319 * * 2441 * 2351 4820 * * * * * * 1659 * 4514 108 58 4664 * 1585 585 * * 4293 1000 0 M 109 * * * * 911 * * * * 4239 3731 * * * * * * * * 1556 109 0 * * * * * * 4293 0 0 A 110 1498 * * 4015 * * * 4054 * 4344 * 4330 * * * 1707 3795 4427 * * 110 0 * * * * * * 3879 0 0 R 111 3328 * * * * * * * 2585 * * * 3311 3706 846 * * * * * 111 0 * * * * * * 3495 0 0 D 112 * * 2399 682 * * * * * * * 2417 * * * * * * * * 112 0 * * * * * * 2604 0 0 V 113 * * * * * * * 1000 * * * * * * * * * 1000 * * 113 0 * * * * * * 1436 0 0 I 114 * * * * * * * 0 * * * * * * * * * * * * 114 0 * * 0 * * * 1000 0 0 //