HHsearch 1.5 NAME d2akla1 FAM FILE d2akla1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2akla1.a3m DATE Mon Mar 8 19:15:11 2010 LENG 74 match states, 74 columns in multiple alignment FILT 41 out of 45 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4258 0.3221 SEQ >ss_dssp CCSCCSCBCTTSCBCCTTCEEECCSCEECSSSSCEECTTCEEESCEECSSTTCEEEEETTTEEEEECGGGCCBC >sa_dssp EEEDEDACBDDECEBEDCCCACACDECEBEECEEEAEECBEBDEAECEECCDDACBECEEDDEBEBDADCADDE >ss_pred CCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEECCCEEEEEEECCCCCEEEEEECCCEEEEEEEEEEEEC >ss_conf 98716998247889026986999987652688745522426766774488541665316840689976324509 >Consensus xexxxxvkDsnGnxLxdGDxVxliKDLkVKGssxxlKxGTkvkxIrLxxxxxxIdckvxgxgxxxLktxfvKKv >d2akla1 SDDGKVIKDSVGNVLQDGDTITVIKDLKVKGSSLVVKVGTKVKNIRLVDGDHDIDCKIDGIGAMKLKSEFVRKV >UniRef50_Q0BTH1(37-108:109) PhnA protein n=13 Tax=Alphaproteobacteria RepID=Q0BTH1_GRABC E=2e-18 s/c=1.30 id=48% cov=99% -DETVQVKDAVGNILADGDSVTLVKDLKVKGANQTLPRGTVIRSIRLTGDPQEIDCKHDTIKGLVLRAEFVRK- >UniRef50_Q6NHL4(50-128:129) Putative uncharacterized protein n=1 Tax=Corynebacterium diphtheriae RepID=Q6NHL4_CORDI E=4e-18 s/c=1.17 id=53% cov=100% -ETSTVIVDSVGNVLSDGDTVSITKTIKVKGAQQPLKSGMKARNIRLKpevgtgPEDHNIECKIDGFGQMILKPAVVKKI >UniRef50_A3K8V3(76-148:149) Putative phnA protein n=1 Tax=Sagittula stellata E-37 RepID=A3K8V3_9RHOB E=1e-17 s/c=1.25 id=42% cov=99% SGDDVVHRDCNGTVLQNGDTVTLIKALQVKGAGFTAKQGTAVRRISLePDNAEHISGRVEGQRIVIL-TKFVKK- >UniRef50_Q17WI7(27-98:99) Alkylphosphonate uptake protein n=1 Tax=Helicobacter acinonychis str. Sheeba RepID=Q17WI7_HELAH E=2e-16 s/c=1.21 id=54% cov=93% ----LIVKDCNNNILQNRDSVILIKDLKVKGSSLVLKKGTKIKNIKLVNSGHSVDCKVER-QSLSLKSEFLKK- >UniRef50_Q02VP0(41-113:114) Uncharacterized Zn-ribbon-containing protein (Phosphonate metabolism) n=4 Tax=Lactococcus lactis RepID=Q02VP0_LACLS E=2e-15 s/c=1.14 id=47% cov=95% ----FIVLDSLGNELETGDDLVIVQDLPVKGMPKPIKQGTKVKNIRINPegkNEHFIDSKIPGFGAISLKGSVVKK- >UniRef50_B9L9N1(103-176:176) PhnA protein n=4 Tax=Bacteria RepID=B9L9N1_NAUPA E=3e-20 s/c=1.34 id=51% cov=99% --TEEVVKDANGNILKAGDSVSVIKDLEVKGAGKTIKRGTVVKNIRMCDVDGHVSCKVDGIGQVYLKTEFLKKI >UniRef50_Q1YXW7(35-108:109) Alkylphosphonate utilization operon protein PhnA n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YXW7_PHOPR E=6e-15 s/c=1.11 id=49% cov=100% TDDAFTVKDINGKLLEQGDKVTLVKDLKVKGSSLNLKIGTKAVIKRIVEGkDHQLDCKVDGAGEIMVTAKYVKK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * 2306 * * * 908 1916 * * * 1 0 * * * * * * 2250 0 0 D 2 * * 1566 1006 * 4197 * * * * * 3900 * * * 4549 * * * * 2 0 * * * * * * 2711 0 0 D 3 * * 1055 2675 * * * * * * * 2818 * * * * 2543 4364 * * 3 0 * * * * * * 2724 0 0 G 4 2863 * 3741 3370 4855 2258 * * 3555 * * * * 4941 4431 2338 3545 * * * 4 0 * * * * * * 2864 0 0 K 5 3113 * * 3229 2751 5037 * 3462 3454 2374 * * * * * * 4345 2518 * * 5 31 5549 * 1000 1000 * * 2960 1000 0 V 6 3183 * * * * * * 1759 * 4510 4635 * 4289 4730 5488 * 3498 1687 * * 6 0 * * * * * * 2962 0 0 I 7 4759 * * * * * 2154 2389 * * * * * * * * 5353 999 5468 * 7 0 * * * * * * 2910 0 0 K 8 * * * * * * 6400 * 856 3942 * * * * 1706 * * 3963 * * 8 0 * * * * * * 2915 0 0 D 9 * * 0 * * * * * * * * * * * * * * * * * 9 0 * * * * * * 2947 0 0 S 10 1765 3780 * * * * * 4197 * * * * * * * 790 * * * * 10 0 * * * * * * 2947 0 0 V 11 6418 * * * 5522 * 5305 * * 4424 * 604 * * * 5728 * 2199 * * 11 0 * * * * * * 2947 0 0 G 12 * * * * * 162 * * * * * 3780 * 4913 * * * * * * 12 0 * * * * * * 2947 0 0 N 13 3296 * * * * * * * 4197 * * 710 * * * 5471 2819 3874 * * 13 0 * * * * * * 2947 0 0 V 14 5567 * * 2332 * * * 2202 4865 3083 * * 3897 5471 * 5542 3854 2118 * * 14 0 * * * * * * 2947 0 0 L 15 * * * * * * * * * 0 * * * * * * * * * * 15 0 * * * * * * 2947 0 0 Q 16 1715 * * 2864 * * 5471 * 3608 3891 * 4179 * 2420 * 4657 4509 4047 * * 16 0 * * * * * * 2947 0 0 D 17 2685 * 964 4522 * * 4751 * * * * 2737 * 4197 * * 4424 * * * 17 0 * * * * * * 2947 0 0 G 18 5023 * * * * 82 * * * * * * * * 5345 * * * * * 18 0 * * * * * * 2945 0 0 D 19 * * 0 * * * * * * * * * * * * * * * * * 19 70 4405 * 0 * * * 2945 1000 0 T 20 5587 * 3162 * * * * * 4184 * * 3087 * * * 1608 1646 4405 * * 20 0 * * * * * * 2945 0 0 I 21 * * * * * * * 3982 * 4411 * * * * * * * 169 * * 21 0 * * * * * * 2945 0 0 T 22 5550 * * * * * * 3121 * 5540 4854 * * 5468 * 3539 1155 2000 * * 22 0 * * * * * * 2945 0 0 V 23 * * * * * * * 2665 * 967 5572 * * * * * * 1690 * * 23 0 * * * * * * 2945 0 0 I 24 * * * * * * * 544 * * * * * * * 4997 3009 2656 * * 24 0 * * * * * * 2945 0 0 K 25 * * * * * * * * 203 * * * * 3569 * * 4405 * * * 25 0 * * * * * * 2945 0 0 D 26 5463 * 229 * * 4746 * * * * * * * * * * 4654 4405 * * 26 0 * * * * * * 2945 0 0 L 27 * * * * * * * 4654 4405 131 * * * * * * * * * * 27 46 4997 * 0 * * * 2945 1000 0 K 28 * * 3516 4619 * * * 4997 694 * * 3468 4010 5463 * * * 4405 * * 28 0 * * * * * * 2945 0 0 V 29 * * * * * * * 4350 3671 4545 * * * * * * * 269 * * 29 0 * * * * * * 2945 0 0 K 30 * * * * * 3671 * * 118 * * * * * * * * * * * 30 0 * * * * * * 2945 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 2945 0 0 S 32 1516 * * * * 3144 * * * * 4411 * * * * 1348 3361 * * * 32 30 5603 * 0 * * * 2945 1000 0 S 33 * * * * * 1890 * * * * * 3146 4411 4654 * 1053 4361 * * * 33 51 * 4854 * * * * 2945 0 0 L 34 4169 * * 4528 2280 3647 * 4639 3757 2764 5466 * * 2841 * 4716 3193 4495 * * 34 0 * * * * 0 * 2920 0 1000 V 35 * * * * * * * 5437 * * 4258 4184 3265 * * * 1079 1774 * * 35 0 * * * * * * 2945 0 0 V 36 2189 * * * * * * 1995 * 1176 * * * * * * * 3516 * * 36 0 * * * * * * 2945 0 0 K 37 * * * * * * * * 92 * * * 4024 * * * * * * * 37 0 * * * * * * 2945 0 0 V 38 4405 * * * * 5524 * 3836 2724 * * * * 2630 1496 4654 * 2700 * * 38 0 * * * * * * 2945 0 0 G 39 * * * * * 0 * * * * * * * * * * * * * * 39 0 * * * * * * 2945 0 0 T 40 5044 * * 4848 * * * * * * 4632 * * * * 5559 195 * * * 40 0 * * * * * * 2943 0 0 K 41 3290 * * * * * * 3792 937 3315 5504 * * * * * 4333 2930 * * 41 0 * * * * * * 2943 0 0 V 42 3071 * 5535 * 4848 * * 2171 * * * * * * * * * 784 * 5530 42 0 * * * * * * 2943 0 0 K 43 * * * * * * 5044 * 787 * * * * * 1680 * 5470 4175 * * 43 0 * * * * * * 2943 0 0 N 44 * * * * * 1847 * 4175 4507 * * 1014 * * 4049 3898 * * * * 44 0 * * * * * * 2943 0 0 I 45 * * * * * * * 115 4175 * * * * * * * * * * 5535 45 0 * * * * * * 2943 0 0 R 46 * * * * * * 5571 * 2546 * * * * * 571 3155 5480 * * * 46 0 * * * * * * 2943 0 0 L 47 * * * * * * * 2994 * 235 5334 * * * * * * * * * 47 68 4432 * 0 * * * 2943 1280 0 V 48 5420 5313 * * * 4799 * 2902 4609 5390 * 4365 3843 * 5529 5421 2138 1615 * * 48 222 2809 * 1262 779 * * 2932 1883 0 D 49 * * 1216 2851 * 3954 * * * * * 3463 3141 * * 3070 5348 5725 * * 49 275 2528 * 1345 722 * * 2932 1908 0 G 50 * * 2351 4609 * 1884 * * 5001 * * 1620 * * * 3746 4799 5313 * * 50 87 4102 * 0 * * * 2932 1000 0 D 51 2773 * 1277 3799 * 3649 * * * * * * 2117 * * * 5568 4729 * * 51 130 3533 * 1237 797 * * 2932 1692 0 H 52 5766 * 4493 2384 * 3610 963 * 5489 4587 * 4016 * 5319 * * * * * * 52 0 * * * * * * 2932 0 0 D 53 5529 * 2626 2293 4365 * 2348 * * 5030 * 2721 * 3150 * 5316 * 5421 * 5385 53 0 * * * * * * 2932 0 0 I 54 * * * * * * * 510 * 4102 * * * * * * * 2060 * * 54 0 * * * * * * 2932 0 0 D 55 5459 * 1083 1249 * * * * * 4799 * * * * * 4368 * * * * 55 0 * * * * * * 2932 0 0 C 56 3030 830 * * * 1907 * * * * * * * * * 4365 * * * * 56 68 * 4435 * * * * 2932 0 0 K 57 * * * * * * * * 699 * * 2862 * * 2369 5698 4895 * * * 57 55 * 4728 * * * 0 2927 0 1348 I 58 5245 * * * * * 4381 1606 * 5247 * * * * * 5684 3066 1211 * * 58 0 * * * * * 0 2894 0 1623 D 59 * * 1350 2143 * * * * 3888 * * 2797 2557 * * * * * * * 59 115 * 3708 * * * 0 2894 0 1623 G 60 5463 * 3848 * * 669 * * 3306 * * 4738 * 4372 4000 * 5085 * * * 60 93 * 4000 * * 1101 905 2891 0 1732 I 61 3445 * * * 2458 * * 2412 * 3652 5334 * * 2329 * * 4455 2626 * 5199 61 68 * 4434 * * 421 1983 2868 0 1733 G 62 * * * * * 783 * * 2693 * * 4889 * 3311 3502 * 4596 * * * 62 0 * * * * 0 * 2891 0 1425 A 63 2814 * * 4102 * 2577 * 2435 5348 * * 4077 4663 2741 4388 3777 5001 5489 * * 63 0 * * * * * * 2932 0 0 M 64 * * * * 5474 * * 2275 * 2173 1804 * * * * * * 2247 * 4258 64 0 * * * * * * 2932 0 0 K 65 * * * * * 5725 * 2258 3173 3533 3288 5459 * 4388 * 3326 * 2053 * 4033 65 0 * * * * * * 2932 0 0 L 66 * * * * * * * 4799 * 143 * * * * * * * 4102 * * 66 295 * 2435 * * * * 2932 0 0 K 67 * * * * * * * * 398 * * * * * 3201 * 3875 3967 * * 67 0 * * * * 0 * 2790 0 1717 S 68 2161 * * * * 4365 * * * * * * 4609 * * 1842 1370 5568 * * 68 0 * * * * * * 2932 0 0 E 69 3250 3315 5446 1278 * * * * 2712 * * * * 4197 * 2717 * * * * 69 0 * * * * * * 2932 0 0 F 70 * * * * 693 * * * * * * * * * * * * 2373 * 2407 70 0 * * * * * * 2932 0 0 V 71 * * * * * * * * * 1474 5474 * * * * * * 695 * * 71 0 * * * * * * 2932 0 0 R 72 * * * * * * * * 196 * * * * 5260 3307 * * * * * 72 0 * * * * * * 2932 0 0 K 73 * * * * * * * * 34 * * * * 5420 * * * * * * 73 0 * * * * * * 2932 0 0 V 74 * * * * * * * 1221 * * * * * * * * * 809 * * 74 0 * * 0 * * * 2239 0 0 //