HHsearch 1.5 NAME d2akka1 FAM FILE d2akka1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2akka1.a3m DATE Mon Mar 8 19:15:48 2010 LENG 72 match states, 72 columns in multiple alignment FILT 41 out of 45 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4112 -0.1034 SEQ >ss_dssp CCCCCBCSSCCBCCTTEEEEESSCEEETTTTEEECTTCEEEEEEECSCSSEEEEECSSCEEEEEETTSEEEC >sa_dssp EEEDAEBDEDCEBDEDCDACBDDDDEDEDEEDEBEEEDDAECADDCECDDCACADBEEDEDBEBEBDBADDD >ss_pred CCEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEECCCEEEEEEECCCCCEEEEEECCCCEEEEEEEEEECC >ss_conf 933645047879126986999987641688845522526866772598531565305653269987444219 >Consensus xxxxvkDsnGnxLxdGDxVxliKDLkVKGssxxlKxGTkvkxIrLxxxxxxIdckvxgxgxixLktxfvKKA >d2akka1 MSIEVRDCNGALLADGDNVSLIKDLKLKGSSTVLKRGTMIRGIRLTDSEDEIEGRTDKIKGLVLRTEFLKKA >UniRef50_Q0BTH1(39-108:109) PhnA protein n=13 Tax=Alphaproteobacteria RepID=Q0BTH1_GRABC E=3e-15 s/c=1.18 id=55% cov=99% -TVQVKDAVGNILADGDSVTLVKDLKVKGANQTLPRGTVIRSIRLTGDPQEIDCKHDTIKGLVLRAEFVRK- >UniRef50_A0KKT7(148-217:217) PhnA protein n=83 Tax=cellular organisms RepID=A0KKT7_AERHH E=2e-11 s/c=1.01 id=48% cov=99% -SVPTVDSNGAVLVEGDSVTLIKDLDVKGAGFTAKRGTLVKGIRLTNNPLHIEGKVNGVQ-IVLVAAYLKKA >UniRef50_B9L9N1(109-175:176) PhnA protein n=4 Tax=Bacteria RepID=B9L9N1_NAUPA E=2e-10 s/c=0.99 id=46% cov=94% ----VKDANGNILKAGDSVSVIKDLEVKGAGKTIKRGTVVKNIRMCDVDGHVSCKVDGIGQVYLKTEFLKK- >UniRef50_Q1YXW7(38-109:109) Alkylphosphonate utilization operon protein PhnA n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YXW7_PHOPR E=0.0001 s/c=0.66 id=41% cov=96% ----VKDINGKLLEQGDKVTLVKDLKVKGSSLNLKIGTKAVIKRIVEGKDhQLDCKVDGAGEIMVTAKYVKKA >UniRef50_C7PR49(121-187:187) PhnA protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PR49_CHIPD E=0.0007 s/c=0.67 id=36% cov=93% -----RDSNGTELLHGDTVVLTQGLNVKGANFMAPKGTIVRRIKLvPDNVEQIEGKIND-QTIVILTKYVRKS >UniRef50_O50577(43-109:121) PhnA n=3 Tax=Helicobacter pylori RepID=O50577_HELPY E=4e-17 s/c=1.33 id=49% cov=94% ----VKDCHNNLLQNGDSVILIKDLKVKGSSLVLKKGTKIKNIKLVNSDHNVDCKIER-QSLSLKSEFLQKS >UniRef50_C7MES6(51-122:123) Alkylphosphonate utilization operon protein PhnA n=4 Tax=Micrococcineae RepID=C7MES6_BRAFD E=5e-07 s/c=0.77 id=41% cov=97% ---EIRDSVGNVLADGDTVTVSKDLkIKGGGGGVVKVGTKVRGIRLIDpiDGHDIDATVPGFGAMKLKSSVVKKA >UniRef50_Q6NHL4(55-127:129) Putative uncharacterized protein n=1 Tax=Corynebacterium diphtheriae RepID=Q6NHL4_CORDI E=1e-16 s/c=1.20 id=38% cov=92% ------DSVGNVLSDGDTVSITKTIKVKGAQQPLKSGMKARNIRLKpevgtgPEDHNIECKIDGFGQMILKPAVVKK- >UniRef50_Q02VP0(44-114:114) Uncharacterized Zn-ribbon-containing protein (Phosphonate metabolism) n=4 Tax=Lactococcus lactis RepID=Q02VP0_LACLS E=1e-15 s/c=1.18 id=30% cov=96% ----VLDSLGNELETGDDLVIVQDLPVKGMPKPIKQGTKVKNIRINPegkNEHFIDSKIPGFGAISLKGSVVKKA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1284 0 0 S 2 2472 * * * * * * * * * * * * * * 1291 1283 * * * 2 0 * * * * * * 1824 0 0 I 3 * * 2723 * * * * 2676 * 2639 2709 * * * * * * 1401 * * 3 0 * * * * * * 1858 0 0 E 4 * * * 700 * * * * * * * * 2870 3006 * * * 3020 * * 4 0 * * * * * * 1908 0 0 V 5 * * * * * * * 2457 * * * * * * * * 3458 460 * * 5 0 * * * * * * 2698 0 0 R 6 * * * * * * 6331 * 827 4265 * * * * 1519 * * 5444 * * 6 0 * * * * * * 2910 0 0 D 7 * * 0 * * * * * * * * * * * * * * * * * 7 0 * * * * * * 2963 0 0 C 8 1747 3471 * * * * * 4139 * * * * * * * 849 * * * * 8 0 * * * * * * 2963 0 0 N 9 6414 * * * 5480 * 5333 * * 4372 * 571 * * * 5747 * 2315 * * 9 0 * * * * * * 2963 0 0 G 10 * * * * * 159 * * * * * 3788 * 4981 * * * * * * 10 0 * * * * * * 2963 0 0 A 11 3092 * * * * * * * 4139 * * 743 * * * 5531 2845 3882 * * 11 0 * * * * * * 2963 0 0 L 12 5548 * * 2347 * * * 2187 5072 2848 * * 3889 5531 * 5516 3906 2209 * * 12 0 * * * * * * 2963 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 2963 0 0 A 14 1636 * * 2840 * * 5659 * 3713 3963 * 4271 * 2434 * 4656 4521 4099 * * 14 0 * * * * * * 2968 0 0 D 15 2726 * 990 4626 * * 4790 * * * * 2783 * 4151 * * 4385 * * 5690 15 0 * * * * * * 2968 0 0 G 16 5001 * * * * 82 * * * * * * * * 5395 * * * * * 16 0 * * * * * * 2968 0 0 D 17 * * 0 * * * * * * * * * * * * * * * * * 17 73 4347 * 0 * * * 2968 1000 0 N 18 5576 * 3157 * * * * * 4151 * * 2942 * * * 1613 1716 4347 * * 18 0 * * * * * * 2968 0 0 V 19 * * * * * * * 4347 * 4385 * * * * * * * 147 * * 19 0 * * * * * * 2968 0 0 S 20 5523 * * * * * * 3129 * 5559 5085 * * 5541 * 3254 1204 1983 * * 20 0 * * * * * * 2968 0 0 L 21 * * * * * * * 2637 * 934 5456 * * * * * * 1771 * * 21 0 * * * * * * 2968 0 0 I 22 * * * * * * * 552 * * * * * * * 4972 3001 2634 * * 22 0 * * * * * * 2968 0 0 K 23 * * * * * * * * 206 * * * * 3573 * * 4347 * * * 23 0 * * * * * * 2968 0 0 D 24 5472 * 230 * * 4790 * * * * * * * * * * 4656 4347 * * 24 0 * * * * * * 2968 0 0 L 25 * * * * * * * 4656 4347 134 * * * * * * * * * * 25 47 4972 * 0 * * * 2968 1000 0 K 26 * * 3575 4599 * * * 4972 684 * * 3546 3983 5472 * * * 4347 * * 26 0 * * * * * * 2968 0 0 L 27 * * * * * * * 4320 3626 4044 * * * * * * * 307 * * 27 0 * * * * * * 2968 0 0 K 28 * * * * * 3626 * * 122 * * * * * * * * * * * 28 0 * * * * * * 2968 0 0 G 29 * * * * * 0 * * * * * * * * * * * * * * 29 0 * * * * * * 2968 0 0 S 30 1537 * * * * 3178 * * * * 4385 * * * * 1333 3321 * * * 30 0 * * * * * * 2968 0 0 S 31 * * * * * 1883 * * * * * 3246 4385 4656 * 1035 4381 * * * 31 43 * 5085 * * * * 2968 0 0 T 32 4241 * * 4544 2311 3269 * 4635 3724 2952 5469 * * 2850 * 4678 2930 5474 * * 32 30 5590 * 0 * 0 * 2945 1000 1000 V 33 * * * * * * * 5402 * * 4277 4151 3258 * * * 1099 1752 * * 33 0 * * * * * * 2968 0 0 L 34 2211 * * * * * * 1993 * 1120 * * * * * * * 3778 * * 34 0 * * * * * * 2968 0 0 K 35 * * * * * * * * 90 * * * 4047 * * * * * * * 35 0 * * * * * * 2968 0 0 R 36 4347 * * * * 5494 * 3801 2748 * * * * 2627 1455 4656 * 2819 * * 36 0 * * * * * * 2968 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 2968 0 0 T 38 5149 * * 5077 * * * * * * 4647 * * * * 5549 183 * * * 38 0 * * * * * * 2967 0 0 M 39 3347 * * * * * * 3923 961 3299 4695 * * * * * 4277 2941 * * 39 0 * * * * * * 2967 0 0 I 40 3054 * 5509 * 5077 * * 2065 * * * * * * * * * 817 * 5548 40 0 * * * * * * 2967 0 0 R 41 * * * * * * 5149 * 831 * * * * * 1598 * 5445 4142 * * 41 0 * * * * * * 2967 0 0 G 42 * * * * * 1732 * 4142 4498 * * 1085 * * 4080 3891 * * * * 42 0 * * * * * * 2967 0 0 I 43 * * * * * * * 118 4142 * * * * * * * * * * 5509 43 0 * * * * * * 2967 0 0 R 44 * * * * * * 5611 * 2595 * * * * * 558 3155 5487 * * * 44 0 * * * * * * 2967 0 0 L 45 * * * * * * * 2980 * 238 5293 * * * * * * * * * 45 123 3619 * 0 * * * 2967 1478 0 T 46 5442 5293 * * * 5077 * 2880 4647 5388 * 4341 3266 * 5440 4520 2042 1946 * * 46 179 3101 * 1382 698 * * 2967 1896 0 D 47 * * 1211 3089 * 3946 * * * * * 3156 3144 * * 3060 5548 5713 * * 47 286 2474 * 1351 718 * * 2967 1901 0 S 48 * * 2348 4603 * 1936 * * 4965 * * 1645 * * * 3442 4998 5262 * * 48 0 * * * * * * 2961 0 0 E 49 2614 * 1621 3497 * 3636 * * 4054 * * * 2155 * * * 5583 4762 * * 49 105 3838 * 1427 671 * * 2961 1463 0 D 50 5647 * 3024 2394 * 3683 1175 * 5565 4687 * 4041 * 5300 * * * * * * 50 90 4054 * 0 * * * 2961 1000 0 E 51 5412 * 2732 2157 4421 * 2397 * * 5122 * 2726 * 3137 * 5348 * 5442 * 5381 51 0 * * * * * * 2961 0 0 I 52 * * * * * * * 522 * 4054 * * * * * * * 2039 * * 52 0 * * * * * * 2961 0 0 E 53 5430 * 1121 1196 * * * * * 4998 * * * * * 4344 * * * * 53 0 * * * * * * 2961 0 0 G 54 2973 870 * * * 1843 * * * * * * * * * 4421 * * * * 54 69 * 4421 * * * * 2961 0 0 R 55 * * * * * * * * 746 * * 2854 * * 2246 5585 4884 * * * 55 49 * 4916 * * * 0 2953 0 1317 T 56 5278 * * * * * 4381 1694 * 5213 * * * * * 5715 2806 1224 * * 56 0 * * * * * 0 2922 0 1623 D 57 * * 1343 2173 * * * * 3866 * * 2807 2535 * * * * * * * 57 75 * 4295 * * * 0 2922 0 1623 K 58 5545 * 3885 * * 746 * * 3080 * * 4859 * 3740 4107 * 5102 * * * 58 415 * 2000 * * 1363 710 2923 0 1677 I 59 3240 * * * 2208 * * 2042 * 3382 5076 * * * * * 3799 2281 * 4974 59 0 * * * * 150 3343 2781 0 2342 K 60 * * * * * 868 * * 2599 * * * * 2035 4542 * * * * * 60 123 * 3615 * * 0 * 2930 0 1000 G 61 2932 * * 3993 * 2271 * * 5366 * * 3445 4535 2586 3353 3716 3722 5412 * * 61 0 * * * * 0 * 2951 0 1386 L 62 * * * * 5439 * * 1394 * 2068 1855 * * * * * * 4106 * 5412 62 0 * * * * * * 2961 0 0 V 63 * * * * * 5681 * 4603 3369 3865 3228 5430 * 4313 * 3368 * 1284 * 3538 63 0 * * * * * * 2961 0 0 L 64 * * * * * * * 2344 * 429 * * * * * * * 4054 * * 64 0 * * * * * * 2961 0 0 R 65 * * * * * * * * 702 2455 * * * * 3264 * 4054 4687 * * 65 0 * * * * * * 2961 0 0 T 66 2142 * * * * 4421 * * * * * * 4603 * * 1913 1325 5583 * * 66 0 * * * * * * 2961 0 0 E 67 3279 3299 5411 1277 * * * * 2715 * * * * 4246 * 2697 * * * * 67 0 * * * * * * 2961 0 0 F 68 * * * * 688 * * * * * * * * * * * * 2356 * 2443 68 0 * * * * * * 2961 0 0 L 69 * * * * * * * * * 1408 5439 * * * * * * 737 * * 69 0 * * * * * * 2961 0 0 K 70 * * * * * * * * 170 * * * * 5287 3544 * * * * * 70 0 * * * * * * 2961 0 0 K 71 * * * * * * * * 34 * * * * 5409 * * * * * * 71 0 * * * * * * 2961 0 0 A 72 270 * * * * * * * * * * * * * * 2552 * * * * 72 0 * * 0 * * * 2759 0 0 //