HHsearch 1.5 NAME d2adca2 FAM FILE d2adca2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2adca2.a3m DATE Mon Mar 8 18:57:57 2010 LENG 88 match states, 88 columns in multiple alignment FILT 115 out of 6294 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.3 EVD 0.4213 0.2340 SEQ >ss_dssp CTTTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC >sa_dssp EEEEDECEDCCBACACCBBEECDDEDACECADECEBECEBCDDCEEEEECABACADDEEBADDADEDBCEDEDDEEDBAEBBBBEDEE >ss_pred CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCEEEEEEECCCCC >ss_conf 9831378679769987987556889999973017958999998055421999986061079999998369690387399994206789 >Consensus xnxxxxxppsxtlxVxnLpxxxtexxlxxxFxxxgxxxxxxxxxxxxxxxaFVxfxxxxxAxxAxxxlxgxxixxgxxlxVxfskxxx >d2adca2 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI >UniRef50_UPI00006CB38A(1061-1146:1213) polypyrimidine tract binding protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB38A E=0.0001 s/c=0.55 id=19% cov=97% ---MTLNPPSLVLHISSLKQEICDHEKIHELFRPYGKIEAIHIEKVPPRyMSHIKFSSLKESLMAIAHMHNKEIK-GRKMLISFTRKKL >UniRef50_A0ND71(721-807:880) AGAP002959-PA n=4 Tax=Culicidae RepID=A0ND71_ANOGA E=3e-09 s/c=0.72 id=19% cov=97% -KYSSSFEPNK-LFIKGLPFNLGQEELRRLFEPFGSIKDiriVCFRSGKSKGLAYLEYETETSAKNAVLKMDQHVI-DGFTITVAISSPP- >UniRef50_B9WIY0(157-232:637) RNA-binding protein, putative n=10 Tax=Saccharomycetales RepID=B9WIY0_CANDC E=0.0006 s/c=0.60 id=18% cov=86% ---------SRTVYLGNLPNDLEPHELLDYVRS--GIIENVRIIPG-KNCCFISFLDTNAALLMHSEFILKKINiKGYNIRVGWGKNT- >UniRef50_A8J0D2(6-88:147) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J0D2_CHLRE E=2e-05 s/c=0.60 id=18% cov=69% ---------CEELYVTGLHAEVTDIECRNIFGTHGAVKEAVIVQKKGpsapgaPQSCIVRMMNHLDAVKAKKALN------------------- >UniRef50_A0E9I9(343-413:627) Chromosome undetermined scaffold_84, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0E9I9_PARTE E=0.0001 s/c=0.68 id=18% cov=76% ----NLNPDDRLILVQNIKEDVTKEQIQEFLSRFGKVIRLTIRKTKNPRFqvqqCFVHYQTMEDSKRARSEIYD------------------ >UniRef50_UPI000192747A(8-98:692) PREDICTED: similar to RNA binding motif protein 25 n=1 Tax=Hydra magnipapillata RepID=UPI000192747A E=0.0004 s/c=0.50 id=17% cov=81% -----IVPPlvqkqeITTVFVGNITDKASDTLIRQILMKCGYIVSWKRVQGAAGRlqaFGFCEYSDPEAGLRSMRLLSGFQIGD------------- >UniRef50_C5MHV3(223-307:810) Predicted protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MHV3_CANTT E=2e-06 s/c=0.63 id=19% cov=91% --------PEFSLFVGDLSASTTEAHLLAFFQKTFPNsIKTVRVMTDPisgksRCFGFVRFTEESERQRALVEMNGVWFA-GRPLRVALATPRI >UniRef50_A0BMP5(564-655:655) Chromosome undetermined scaffold_117, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0BMP5_PARTE E=8e-05 s/c=0.53 id=17% cov=92% -------PPCDTIQVSNLTRNSCQNHIMQQYMQDFGQIKVLKYQELFLLYRILSTGNKYMCIlkyatievalTVLAKMNGLEL-DGKPIQINFSKQKL >UniRef50_B9MWQ9(197-278:281) Predicted protein n=2 Tax=Magnoliophyta RepID=B9MWQ9_POPTR E=7e-06 s/c=0.63 id=20% cov=92% --------PCSTLFIANLGPNCTEDELKQVLSQYPGFHVLKIRAKGGMPVAFADFEEIEQATKVMENLQETTLpsSDRGGMHIEYARSKM # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 836 * * * * 2229 2143 * * * * * 1 0 * * * * * * 4144 0 0 N 2 * * * * * * 3978 * 3992 * * 447 * * * 2836 * * * * 2 0 * * * * * * 5261 0 0 F 3 4236 * * * 1142 * * * * * 4038 * * 4044 4080 4328 4306 * 4112 2689 3 0 * * * * * * 5571 0 0 Q 4 * * 3524 3083 * * 2983 * 4304 * 2941 * * 2028 4569 3750 3569 * * 4583 4 52 * 4815 * * * * 6383 0 0 N 5 4553 * 3112 5000 * 4736 * * * * * 1683 * 2652 * 2456 4501 5035 * 4457 5 0 * * * * 0 * 6595 0 1000 I 6 * 4912 * 3768 * 4152 * 1483 * 2177 * 4790 * 3944 * 5059 4899 3962 * 5083 6 0 * * * * * * 6871 0 0 F 7 * * 4155 5203 3119 4871 3356 4829 5091 2727 4005 3050 5354 3428 * * * 3926 * 3506 7 44 * 5066 * * * * 6993 0 0 P 8 3333 * 5547 5754 * * * * 4573 * * * 601 5587 * 3609 4141 * * * 8 59 4633 * 1606 575 * 0 7625 1706 1000 P 9 5109 * 4348 5758 * * 5675 5928 5692 * * 5008 611 4899 * 3817 5947 4593 * * 9 116 3691 * 664 1439 0 * 7765 2597 1000 S 10 * 2764 6288 6085 6048 * * 4674 6270 * * 3540 6473 * 5231 1055 3146 4646 * * 10 54 6611 5248 1000 1000 * * 8194 1000 0 A 11 4541 6573 4458 4904 * 6443 4405 * 2952 5837 * 2791 6660 6299 1623 4244 3087 * * * 11 56 5078 6892 1644 556 0 * 8395 1644 1755 T 12 6791 5536 * 5056 * 6463 * 3974 5141 5090 * 3986 * 6430 5074 3493 1189 2611 6498 * 12 73 4336 * 1072 932 0 * 8531 3040 1000 L 13 * * * * * * * 1976 * 937 * * * * * * * 2161 * * 13 15 6623 * 1585 585 * * 8625 1000 0 H 14 5470 6820 * * 1843 6689 2976 4652 5853 4550 4729 * * 4694 * * * 5646 4203 1725 14 16 6546 * 1000 1000 * * 8694 1000 0 L 15 * 4786 * * 4626 * * 2119 * 2994 5795 * * * * * * 864 * * 15 0 * * * * * * 8668 0 0 S 16 4612 5997 5503 * 5052 1500 5729 * 3703 6682 6378 5896 * 4493 3304 2834 3226 * * 6547 16 0 * * * * * * 8668 0 0 N 17 6526 6630 4318 * * 2240 5696 * 4807 * * 848 6802 5222 6953 4648 * * * 5432 17 22 * 6035 * * * * 8668 0 0 I 18 5522 6642 * * 5263 * * 2418 * 651 5662 * * 6792 * * 6162 3724 * * 18 15 6618 * 1000 1000 * 0 8623 1000 1000 P 19 4011 5711 3706 5380 * 5060 4746 * 5087 * 6614 4469 1095 6532 5536 3230 4668 5667 * * 19 13 6837 * 3322 152 0 * 8620 1000 1000 P 20 4590 * 3470 4133 4054 4686 4758 6786 3991 5209 6275 5075 2485 3706 3450 4105 5214 6799 6986 3558 20 0 * * * * * * 8666 0 0 S 21 5417 5775 2244 3194 * 3827 4461 * 4097 5283 * 2475 5052 6489 6031 3043 3796 * 6938 * 21 0 * * * * * * 8666 0 0 V 22 4053 3977 5378 * 4184 * * 2897 * 3467 3609 * * * * 4630 2663 2257 3964 5720 22 26 5803 * 1326 734 * * 8666 1801 0 S 23 4619 4031 3056 5246 * 4971 * 6881 4416 5952 6674 3610 5389 6488 6059 2846 1522 5696 * * 23 25 5849 * 2000 415 * * 8666 1742 0 E 24 5029 * 3528 1432 * 6715 7276 5944 3483 4679 5599 6007 4446 3305 5982 4841 5431 3914 6079 6247 24 49 4903 * 625 1509 * * 8666 2787 0 E 25 3273 * 2701 2132 * 7056 4165 6884 4234 5788 6489 3841 4988 3300 5816 3733 4414 5816 * * 25 14 6662 * 1585 585 * * 8666 1000 0 D 26 4118 * 2429 2040 5417 5676 4703 6688 6074 4567 5178 4746 6674 3045 4691 4740 4984 4831 * 5222 26 15 6561 * 2000 415 * * 8666 1000 0 L 27 * 6884 * * 4601 * * 1968 6214 1195 4251 * * * * * 6275 2483 * * 27 11 7018 * 1585 585 * * 8666 1000 0 K 28 4215 5787 * 3965 4056 * 4551 3580 2108 4207 5222 5218 * 4229 2537 6979 6776 4380 * 4409 28 0 * * * * * * 8666 0 0 V 29 3888 * 2628 2393 * 5709 4602 * 3505 6720 * 3741 4494 2998 4607 4099 4377 7218 * 5390 29 12 * 6915 * * * * 8666 0 0 L 30 4500 * 5403 5415 3410 * 4110 2461 5038 2320 5149 6451 * 4394 5886 * 5659 2781 * 3735 30 16 * 6487 * * 0 * 8664 0 1000 F 31 * 5212 * * 558 6552 6194 * * 2863 5502 * * * * * 5694 4305 * 4648 31 13 6786 * 0 * 0 * 8650 1000 1000 S 32 3513 6093 4846 2875 4844 4077 6968 * 3612 5334 5059 3752 5740 2743 4077 3011 5678 4986 * 6459 32 0 * * * * * * 8666 0 0 S 33 4918 * 4843 3543 * 4595 5948 5537 2294 5818 * 3758 3270 2879 3598 3668 4233 5833 * * 33 39 5909 6623 0 * * * 8666 1751 0 N 34 3464 3314 4385 4948 2211 7202 4463 4477 4309 5152 * 5742 4901 * 5806 6645 4748 4812 6781 2514 34 77 5860 4845 1876 459 * 0 8652 1664 1000 G 35 4480 4421 6560 6848 3430 887 7006 5022 5128 * 6477 6654 5283 6572 5161 5153 * 4299 * 5355 35 58 4674 * 3428 141 0 * 8636 2890 3225 G 36 4679 * 4537 3765 5597 1966 5732 6021 3265 4761 * 4283 3950 5341 4344 4808 3507 4029 * 5816 36 48 5683 6227 1967 426 * * 8666 1732 0 V 37 4936 * 7219 4152 5020 5912 * 2050 4044 4062 6673 6915 4036 4715 * 4073 4294 2055 * 5214 37 26 5783 * 1416 678 0 * 8672 1723 1673 V 38 4428 6568 5268 3697 5077 * 5757 1998 3830 4220 5821 5393 * * 3845 5452 4458 2189 * 5741 38 46 5674 6383 1000 1000 * * 8666 1843 0 K 39 5424 * 3477 2699 6760 6453 5185 4410 3182 4813 6982 3505 6559 4822 2786 3512 4202 3985 * * 39 66 4901 6480 1061 941 * 0 8640 2776 1000 G 40 3283 5286 4304 4651 5988 5274 6852 2656 3792 3112 5194 4697 * 5401 4265 3677 5837 3190 6842 5113 40 65 4863 6726 1672 543 980 1021 8619 2671 1724 F 41 5119 4846 3977 4287 4224 * 6535 2846 3396 4106 5873 6527 6859 6828 3122 5358 5410 2242 * 4449 41 37 5838 6965 1784 495 960 1041 8648 1663 1727 K 42 4473 6844 5803 4846 4380 6772 4608 2555 2647 3109 4123 5168 * 6503 2847 5983 5187 4042 * 6570 42 37 7006 5810 3000 193 981 1019 8639 1000 1701 F 43 5812 * 5749 6531 3114 5982 5041 3026 3798 3233 4961 5632 5041 4653 3011 4199 4168 3590 5627 5047 43 73 4854 6074 1678 540 1639 559 8672 2818 2333 F 44 6752 6892 4779 4668 4021 5950 5192 3393 3937 3371 4765 4600 3536 3931 3779 3813 3527 4540 6174 5221 44 68 4653 7259 2038 402 862 1152 8615 3279 2740 Q 45 7011 * 3507 3555 * 3066 4679 5886 2498 * 4623 3941 3455 4797 3092 4319 4959 5189 * 7162 45 170 3446 5683 2125 376 713 1359 8632 4694 2138 K 46 4371 * 3814 4391 6610 3266 4795 * 2208 5302 * 3461 4784 4821 2914 3555 5077 6185 * 5854 46 104 4080 6596 1755 507 0 * 8681 3948 2213 D 47 4799 * 4600 4071 5051 4039 4846 4257 3950 6915 5389 2838 5112 4616 3711 2243 4708 6004 * 4738 47 83 4329 7380 2351 315 0 * 8675 3602 1000 R 48 5023 5958 6655 5144 5842 3926 4379 5111 2346 6191 6789 5428 4186 5110 1975 4812 3589 5725 6730 5223 48 120 4053 5692 1820 481 * 0 8694 3976 1000 K 49 4654 4530 5315 5253 * 1581 4018 * 3898 6181 6825 3875 4729 3950 3398 4362 4338 * * 5915 49 170 3719 4827 1461 651 1596 580 8671 4516 2191 M 50 * 3179 6859 5623 2113 6319 * 4559 4627 7198 3771 6796 * 5318 6406 4304 5399 3739 * 1949 50 82 4463 6673 2073 391 0 * 8581 3333 3359 A 51 993 2271 * * * 2243 * 6653 * 6564 * * * * 5061 6228 * 6033 * * 51 27 5737 * 1275 769 * 0 8674 1689 1000 L 52 * * * * 680 * 5077 4065 * 3579 4989 * * * * 6579 5433 5458 * 3121 52 0 * * * * 0 * 8674 0 1000 I 53 4526 5359 5961 * * * * 2242 * 3291 5407 * * * * * * 788 * * 53 15 6576 * 1000 1000 * * 8690 1000 0 Q 54 3884 5967 4635 1910 * 6669 5307 5976 3744 * * 3592 * 3853 3499 4031 2821 5387 7008 6738 54 0 * * * * * * 8690 0 0 M 55 * 6692 * 5961 816 * * * * 4658 3660 * * * * * 5113 * * 1951 55 22 * 6036 * * * * 8690 0 0 G 56 3723 6048 3640 2674 6950 4605 6619 5341 2924 5679 4989 4602 4776 4257 3917 3675 4187 4171 * 5605 56 0 * * * * * 0 8644 0 1000 S 57 5291 7206 2307 5340 * * 4793 * 4564 5798 * 2299 * * 4265 2498 2292 6943 * * 57 0 * * * * * 0 8644 0 1000 V 58 5827 * 6847 3044 * 6729 4045 2907 3851 4138 7143 5260 3737 4627 2610 * 4082 2820 * 6653 58 0 * * * * 0 * 8644 0 1000 E 59 3327 * 3029 1737 * 5258 6359 6623 3491 5296 * 4426 * 3935 4249 3949 4350 5442 * 6194 59 0 * * * * * * 8690 0 0 E 60 3315 6738 2195 2532 6217 5893 4353 5729 * 5974 6194 4676 * 4114 6762 2353 7164 4511 * 5746 60 0 * * * * * * 8690 0 0 A 61 515 3998 * * * 5724 * 6633 * * 5354 * 6750 5939 7050 4151 5315 4020 * 6946 61 0 * * * * * * 8690 0 0 V 62 4610 5380 3826 3161 6954 6359 5894 2505 3507 4083 5104 4195 * 3211 4760 5302 4523 3695 * 5810 62 33 6194 6856 3322 152 * * 8690 1000 0 Q 63 3133 * 4544 3371 5583 6487 * 5761 2250 3960 4703 5386 * 3551 2877 4291 3666 6958 * * 63 0 * * * * * 0 8684 0 1000 A 64 585 4157 * * 5195 * * 5191 * * 5598 * * 6471 * 6033 5828 2665 * * 64 23 5952 * 2000 415 0 * 8684 1000 1000 L 65 4650 * * 6669 4632 * 6616 2282 4410 1763 3176 * * * 4110 6359 6943 2931 * 4941 65 22 * 6071 * * * * 8690 0 0 I 66 2843 5096 4036 3070 6783 7118 5618 5785 2760 4563 5167 2987 * 4040 3659 4377 5200 4746 * * 66 48 * 4934 * * 0 * 8693 0 1626 D 67 3112 5332 4361 3142 6451 4770 4451 3991 2610 3724 6467 3741 * 5694 4559 4174 3674 * * 5658 67 75 7252 4504 0 * 0 * 8684 1000 2772 L 68 5809 5070 * * 3355 * * 4709 6726 1313 2077 6799 6924 6704 5916 6499 5684 4151 * 4749 68 42 6807 5683 1000 1000 685 1404 8649 1000 3328 H 69 6835 * 2700 4463 6457 5636 2251 5645 * * * 1654 * 3252 5715 4237 * * * 4809 69 86 5329 4918 1106 901 1119 890 8667 2276 2984 N 70 6930 * 4541 4512 5958 1216 4935 * 4522 6510 6759 2035 * 4044 5226 5744 6378 * * * 70 53 5648 5938 0 * 282 2494 8625 1774 3313 H 71 5267 5966 * 3884 3628 5890 4766 4510 2457 3598 6578 6826 * 4598 3707 4360 3662 3979 6476 3216 71 45 5612 6621 1000 1000 0 * 8619 1445 2453 D 72 4547 5694 3122 2306 6779 7223 6611 4519 3750 4825 * 4737 3511 3646 3427 5027 4812 4972 6693 4807 72 31 6579 6534 1000 1000 0 * 8625 1000 1000 L 73 * * * 6461 3357 * * 1885 5823 1922 3677 * 5225 * * 6505 5426 2787 6609 4492 73 224 4823 3204 1861 464 0 * 8614 2941 1000 G 74 4457 6666 4454 4798 3415 2484 * 5051 3957 4057 5088 4882 3847 4950 4103 3179 5361 5135 6362 4751 74 277 4472 2948 680 1412 0 * 8560 2745 4735 E 75 5378 * 2243 3427 * 2765 4912 * 3958 5272 4644 2696 4805 4637 6555 3464 * 5080 * * 75 144 4846 4061 1573 591 0 * 8425 2464 5021 N 76 5921 4657 5731 * * 1131 5234 * 4663 * * 2616 4214 6683 * 3291 3979 * * 6656 76 125 4475 4722 1217 811 0 * 8413 2893 3323 H 77 * 5466 * 5098 5754 3481 3626 * 2400 * 5536 6689 6038 3476 1565 4935 5453 6362 * 5172 77 114 4764 4664 1806 486 0 * 8352 2583 2521 H 78 4923 6522 5510 4783 6605 4974 5750 4871 3024 4808 5775 4220 2269 4153 3042 4215 4555 5230 6220 4295 78 65 4508 * 1489 636 0 * 8395 2871 2550 L 79 * * * * 4358 * * 1730 * 1302 3150 * * * * * * 2925 * * 79 24 5934 * 0 * * * 8370 1157 0 R 80 5151 * 5743 4609 6226 * 4692 4451 2574 4402 * 4138 * 3160 1593 6239 4222 4956 * * 80 17 6444 * 1000 1000 * * 8370 1000 0 V 81 4957 6141 * * 6212 * * 1807 * 2815 6372 * * * * * * 1000 * * 81 0 * * * * * * 8332 0 0 S 82 4465 5156 3454 3169 6179 3061 5357 * 5195 * 6388 3281 * 6582 3217 2011 5247 * * 4978 82 17 6419 * 2322 322 * * 8094 1000 0 F 83 * * * * 1182 * * 5410 4655 3404 6143 * 5210 6303 5380 * * * 2757 2509 83 0 * * * * * * 8094 0 0 S 84 1513 * * * 6005 2687 * * 6292 * * * * 5828 * 1370 4435 6044 * * 84 20 * 6181 * * * * 7949 0 0 K 85 * * 3769 6022 * * * * 919 * * 4333 * 6200 1880 4890 6177 * * * 85 0 * * * * 0 * 7813 0 1000 S 86 4022 * * 5501 * * * * 4401 * * 1871 3316 4206 5208 1831 2911 * * * 86 0 * * * * * * 7419 0 0 T 87 * * * * * * * * 1850 * 5154 5440 1654 3658 3222 * 2782 5508 * * 87 0 * * * * * * 7265 0 0 I 88 * * * * * * * 2256 * 850 2769 * * * * * * 3488 * * 88 0 * * 0 * * * 5076 0 0 //