HHsearch 1.5 NAME d2a1ja1 FAM FILE d2a1ja1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d2a1ja1.a3m DATE Mon Mar 8 17:09:20 2010 LENG 62 match states, 62 columns in multiple alignment FILT 61 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.7 EVD 0.3980 0.1563 SEQ >ss_dssp CCHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHCCCCCCC >sa_dssp EDEEBDEBCCBDEEABECADEEBEDDECBDEBDCEDACEBBEDEECADDACCECDEEEEEEE >ss_pred CHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCC >ss_conf 96899538999989999999519889999972099999985792889999999821304259 >Consensus PxdxLxxLPGVtxkNxxxixxxvxslxeLxxxsxeeLxellGxxxxarxlyxFlhxxxxxxx >d2a1ja1 PQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSFAEVV >UniRef50_C4R2L3(893-950:960) Single-stranded DNA endonuclease (With Rad10p) n=1 Tax=Pichia pastoris GS115 RepID=C4R2L3_PICPG E=9e-06 s/c=0.89 id=29% cov=95% -IDVLTQIPGVTKVNYHLIITKVKNLKKFVNLSLQEMQDIIG-KEAGSVAYNFVNWKFNS-- >UniRef50_B6AD50(885-942:945) ERCC4 domain-containing protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AD50_9CRYT E=5e-11 s/c=1.18 id=31% cov=95% ---LLRQLPGVNTRNIHLVISNFKSLRDLSNATQKKLIDLLGNS-NGISLFRALHASHSESL >UniRef50_B0DNN1(924-977:994) Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0DNN1_LACBS E=4e-10 s/c=1.22 id=30% cov=85% --EVLRCLPGISAKNVKYVMGKVGSLREFCELDIKGVQDILG-VEPGKACWEFMH------- >UniRef50_Q10T59(935-995:995) Os03g0100400 protein n=3 Tax=Magnoliophyta RepID=Q10T59_ORYSJ E=4e-16 s/c=1.41 id=29% cov=100% -IEFLRRLPGVTDSNYRRIMEECNSLAELALLPVERLSELMGTQKGARMLKEFLDAKCPTML >UniRef50_A8PX41(858-912:915) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PX41_MALGO E=7e-10 s/c=1.18 id=32% cov=90% --EMLRAMPGVTVKNSAYIARKIPHIHSLSDASVTELQGLIGS-EPGRKLHDFLHRRF---- >UniRef50_C8VA33(925-980:985) Single-stranded DNA endonuclease (Eurofung) n=33 Tax=Leotiomyceta RepID=C8VA33_EMENI E=1e-09 s/c=1.14 id=33% cov=92% PQEMLRAVPGVSPQVLERLILETGNISEIANMSVEELDPFMG-REAARQVVGFFRKS----- >UniRef50_P36617(831-890:892) DNA repair protein rad16 n=1 Tax=Schizosaccharomyces pombe RepID=RAD16_SCHPO E=2e-08 s/c=1.01 id=29% cov=89% PLDLLMGLPYITMKNYRNVFyGGVKDIQEASETSERKWSELIG-PEAGRRLYSFFR------- >UniRef50_Q8SRC6(697-751:768) BELONGS TO THE XPF/ERCC4/RAD1 FAMILY n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRC6_ENCCU E=6e-07 s/c=1.01 id=23% cov=90% -HEILLSIPGITQFNISRVRRYFRSLKDLVFSTMERLEVALGRENSA-LIYDFFRQE----- >UniRef50_UPI0001792432(785-843:875) PREDICTED: similar to excision repair cross-complementing rodent repair deficiency, complementation group 4 n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792432 E=5e-10 s/c=1.11 id=30% cov=97% -KDFMSKLPGVTTQNILNLLNKGQSLTHMLKMSLQELKTITGNSLDAETLYNALHKKVKP-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 3502 0 0 Q 2 * * * 4852 * * 4147 1528 3860 3779 * * * 1894 * * * 4699 * 3147 2 0 * * * * * * 4637 0 0 D 3 5447 * 711 1853 * * * * 4373 * * * * * 4600 * * * * * 3 0 * * * * * * 4742 0 0 F 4 * * * * 1573 * * 3479 * 2510 2097 * * * * * * 2600 * * 4 0 * * * * * * 4768 0 0 L 5 * * * * * * * 3578 * 317 4360 * * * * * * 3953 * * 5 0 * * * * * * 4768 0 0 L 6 4689 * * * * * * 5874 4014 2248 4553 * * 2875 1335 3775 5417 * * * 6 0 * * * * * * 4768 0 0 K 7 2693 4800 5780 * * 4253 5502 5542 1994 * * 3578 * 4010 2572 3460 5750 * * 5583 7 0 * * * * * * 4768 0 0 M 8 * * * * 5351 * * 2318 * 713 3717 * * * * * * 3490 * * 8 0 * * * * * * 4768 0 0 P 9 * * * * * * * * * * * * 0 * * * * * * * 9 0 * * * * * * 4789 0 0 G 10 * * * * * 76 * * * * * * * * * * * * * 4283 10 18 * 6356 * * * * 4789 0 0 V 11 * * * * * * * 1306 * * * * * * * * * 747 * * 11 0 * * * * * 0 4781 0 1000 N 12 * * * * * * 5598 * * * * 1733 * * * 2295 1075 * * * 12 0 * * * * 0 * 4781 0 1000 A 13 3026 * 2727 4092 5456 6030 5651 4568 5432 5585 5159 3866 2867 4430 * 3732 3608 3853 5891 * 13 0 * * * * * * 4789 0 0 K 14 4062 * * 5902 5441 5190 4122 6061 1047 6367 6308 * * 3215 4380 3914 * 4297 * 5713 14 0 * * * * * * 4789 0 0 N 15 5470 * * * * * * 5568 * * * 125 * * * 5862 * 5505 * * 15 0 * * * * * * 4789 0 0 C 16 3524 4130 * * 4637 * * 2156 * 3431 3961 * * 5585 * 5535 * 3864 * 1629 16 0 * * * * * * 4789 0 0 R 17 4164 * 5284 3655 * 4810 3110 * 2982 5499 * 4511 4220 6028 1785 4718 * 6039 5602 4009 17 0 * * * * * * 4789 0 0 S 18 4248 * * 5720 6042 5619 4835 * 3407 3115 * 3769 * 6066 1916 2914 4716 4492 6030 3958 18 0 * * * * * * 4783 0 0 L 19 * * * * 5288 * * 1275 * 1923 * * * * * * * 1749 * * 19 0 * * * * * * 4783 0 0 M 20 4143 * * * 5159 * * 1779 * 2402 1679 * * * 5447 * 4176 4502 * * 20 76 4284 * 0 * * * 4783 1378 0 H 21 3176 * 3790 4738 * 3802 5374 5483 * 3976 * 2789 * 3590 2574 2481 5435 * * * 21 21 6129 * 1000 1000 * * 4783 1000 0 H 22 * * 6129 2950 * 3503 4238 * 1878 4840 * 2520 * 4715 3126 5172 5853 6234 * 5447 22 0 * * * * * * 4783 0 0 V 23 * 2468 * * 3464 3888 * 3238 * 5607 * * * * * * 3404 1184 * * 23 0 * * * * * * 4783 0 0 K 24 * * 3779 3372 * 2626 * * 1688 * * 4260 4892 4758 3231 4969 3596 6129 * * 24 0 * * * * * * 4783 0 0 N 25 * 4984 3137 * * * 5537 * * * * 1899 * * * 823 * * * * 25 0 * * * * * * 4783 0 0 I 26 * * * * 5543 * * 1836 * 765 4617 * * * * * * 3852 * * 26 0 * * * * * * 4783 0 0 A 27 2241 * 4301 3393 * * 5537 5660 3073 * * * * 3830 2388 4154 3923 5597 * 3674 27 0 * * * * * * 4783 0 0 E 28 6366 * 2255 1156 * 4375 3229 * 4758 * * 5288 * 3735 * 5537 5997 * * * 28 0 * * * * * * 4783 0 0 L 29 4222 * * * 4594 * * 3567 * 449 3893 * * * * * * 5588 * * 29 0 * * * * * * 4783 0 0 A 30 1816 2524 * 5314 5597 6045 * 4606 * 4085 * * * * 5543 3189 5582 2126 * * 30 0 * * * * * * 4783 0 0 A 31 4498 5116 3514 2382 5447 * * * 3599 3826 * 2198 * 5104 5330 3314 3333 * * * 31 0 * * * * * * 4783 0 0 L 32 3369 5898 * * * * * 4919 4291 1636 1789 * * 6316 5619 4051 3595 6045 * * 32 0 * * * * * * 4783 0 0 S 33 * * 4985 3312 * * * * * * * 5543 3380 * 6173 796 2640 * * * 33 0 * * * * * * 4783 0 0 Q 34 * * * 2092 * * * 4834 4428 2553 3895 * * 2445 3536 * * 2502 * * 34 0 * * * * * * 4783 0 0 D 35 3654 * 2654 1227 * 6042 * * 3580 * * 5288 * 4469 4284 3902 4421 * * * 35 0 * * * * * * 4783 0 0 E 36 4316 * 3873 1229 * 5772 * * 3696 * * 4552 * 3149 2533 5660 6432 * * * 36 0 * * * * * * 4783 0 0 L 37 * * * * 3576 * * 4192 * 450 4192 * * * * * * 4415 5159 * 37 21 * 6117 * * * * 4783 0 0 T 38 2787 * 4487 2759 * 4528 * 3926 4229 * * * * 3053 3619 3317 3336 3335 * * 38 0 * * * * 0 * 4779 0 1000 S 39 5486 * 2313 1305 * 4769 * * 4651 * * 4973 3541 5720 4942 3984 4644 5447 * * 39 0 * * * * * * 4783 0 0 I 40 4136 * * * 4614 * 5166 1631 * 1326 5853 * * * * * 5997 3522 * 4935 40 0 * * * * * * 4783 0 0 L 41 4942 5573 * * * * * 2790 * 1144 2108 * * * * * 5504 3626 * 6117 41 104 5798 4275 2000 415 * * 4783 1000 0 G 42 5558 * 5820 * * 245 * * * * 5748 5685 * 3951 * 6072 * * * * 42 620 * 1517 * * 0 * 4829 0 1766 N 43 * * 2999 * * 3290 5266 * 4705 * * 1635 3582 * 4911 2118 4672 * * * 43 166 * 3201 * * 0 * 4424 0 3904 A 44 3007 * * 3495 * * 5498 4735 2252 * * 4697 3114 3431 4559 3287 4461 3638 * * 44 41 * 5169 * * 0 * 4805 0 2177 A 45 3495 5676 5513 1293 * 5594 * 6165 3595 4658 * 3621 * 6517 4438 3355 4544 5277 * * 45 86 * 4110 * * 0 * 4788 0 1613 N 46 2522 5314 4342 5284 5644 5194 5863 * * 5482 * 1599 3136 3863 * 4480 * 4085 * 5471 46 25 5853 * 3700 115 0 * 4745 1000 2056 A 47 871 * * * * 1142 * * * * * * * * * * * * * * 47 33 * 5447 * * * * 4783 0 0 K 48 * * 5555 3986 * * * 5120 1609 * * 4648 * 4906 1377 4453 4717 5880 * * 48 29 * 5638 * * 0 * 4736 0 1000 Q 49 3248 * * 4882 5584 5406 * * 2024 3128 3971 4816 * 2859 5146 3848 3352 5421 * * 49 0 * * * * 0 * 4759 0 1000 L 50 2891 4415 * * 5521 * * 3025 * 617 * * * * * * * 5514 * * 50 0 * * * * * * 4783 0 0 Y 51 * * * * 3387 * 3111 * 5584 5582 5883 * * * 4238 * 6388 4498 2989 1015 51 0 * * * * * * 4783 0 0 D 52 3905 * 3139 1858 * 3553 * * 5128 * * 2203 * 5042 3309 5159 4222 * * * 52 0 * * * * * * 4783 0 0 F 53 3661 * * * 283 * * 4761 * * * * * * * 4448 * * * 5906 53 0 * * * * * * 4783 0 0 I 54 * * * * 2107 * * 2358 * 1028 4106 * * * * * * 5349 * * 54 0 * * * * * * 4763 0 0 H 55 * * 3679 5773 * * 1032 * * * * 2210 * 5394 2518 * * * * * 55 0 * * * * * * 4803 0 0 T 56 2733 * * 3162 * * 2990 * 2913 * * * * 3027 3595 3324 3396 4431 4939 * 56 0 * * * * * * 4592 0 0 S 57 4115 * * 2434 * 4795 * * 1650 * * * 3312 5499 4124 2450 4665 * * * 57 0 * * * * * * 4583 0 0 F 58 * 3365 * * 1138 * 3131 4486 * 4049 * * * * * * * 4408 * 2455 58 0 * * * * * * 4219 0 0 A 59 4498 * * * * * 3194 * 2096 4291 * 3973 1694 * 4168 3302 4980 * * * 59 0 * * * * * * 4036 0 0 E 60 3355 * 3621 2106 * * * * * * * * 1844 * * 2724 2654 * * * 60 0 * * * * * * 3901 0 0 V 61 3322 * * * * * * * * 2348 3410 * * * 3281 2266 * 1743 * * 61 0 * * * * * * 3229 0 0 V 62 * * * * * * * 3084 * 1038 * * * * * * * 1339 * * 62 0 * * 0 * * * 2997 0 0 //