HHsearch 1.5 NAME d1zu1a1 FAM FILE d1zu1a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1zu1a1.a3m DATE Tue Mar 9 02:19:25 2010 LENG 72 match states, 72 columns in multiple alignment FILT 19 out of 23 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.0 EVD 0.4415 1.3658 SEQ >ss_dssp CCCSCCCCCCCCCCSHHHHHHHHHHTTTTBCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCC >sa_dssp EEEEEEEEEEECBECDECACDCBEECEDBACEEDAEBCECEBEDDDDACECACDEEBBDDCEECDDEEEEEE >ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 975779983536458999999985011002545520311365371567888776888999999999541159 >Consensus axxxxngdxxxlpxgxxxvxxmiqexxxLftdxxCKvCxaxLxsesQrxaHYegkkHAqkVrxYxxxhgxex >d1zu1a1 ADEFGNGDALDLPVGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGED >UniRef50_UPI00014F72FC(9-53:226) UPI00014F72FC related cluster n=1 Tax=Gallus gallus RepID=UPI00014F72FC E=9e-07 s/c=1.22 id=48% cov=64% ---------------------------HLFTDTFCRVCWAVLPFESQRMSHYEGRKHAQNVYLYVQSHGMKD >UniRef50_Q28EG9(56-100:553) Zinc finger matrin-type protein 1 n=3 Tax=Xenopus RepID=ZMAT1_XENTR E=6e-06 s/c=1.16 id=50% cov=64% ---------------------------ELFTDTFCKVCNAVLQFESHRISHYEGKKHAQKVRLYFLKNELEE >UniRef50_UPI000179E2B5(17-76:260) zinc finger, matrin type 1 isoform 1 n=1 Tax=Bos taurus RepID=UPI000179E2B5 E=1e-16 s/c=1.47 id=40% cov=69% -----------------------QEKTELFADNFCHVCGVVLQFESQRISHYESEKHAQNVRFYFQMHGEQN >UniRef50_UPI00016E4B78(8-50:486) UPI00016E4B78 related cluster n=3 Tax=Tetraodontidae RepID=UPI00016E4B78 E=3e-10 s/c=1.54 id=45% cov=61% ----------------------------LLADDYCHVCEAVLLFESQRLSHYEGKKHAQRVRVYLQAKRAE- >UniRef50_A9ULH3(56-106:190) Putative uncharacterized protein n=2 Tax=Tetrapoda RepID=A9ULH3_XENTR E=6e-05 s/c=0.95 id=37% cov=53% ---------------------------DLCRPLSCKLCNVTLNSAQQAQAHYQGKNHNKKLRNY-------- >UniRef50_Q9H898(7-49:229) Zinc finger matrin-type protein 4 n=32 Tax=Euteleostomi RepID=ZMAT4_HUMAN E=9e-13 s/c=1.74 id=59% cov=61% -------------------------DQDLFTDSYCKVCSAQLISESQRVAHYESRKHASKVRLYYMLH---- >UniRef50_UPI000180AEB1(92-132:269) PREDICTED: similar to zinc finger protein 346 n=1 Tax=Ciona intestinalis RepID=UPI000180AEB1 E=2e-06 s/c=1.31 id=50% cov=47% ----------------------------------CKVCNAELNTTDQSQAHYMSDKHQKKVRHYFLV----- >UniRef50_B7PQE6(58-100:276) Zinc finger protein, putative n=1 Tax=Ixodes scapularis RepID=B7PQE6_IXOSC E=8e-05 s/c=1.12 id=44% cov=44% ----------------------------------CKLCDAKLNGRLQATAHYVGKSHAKKVKQYL------- >UniRef50_Q9UL40(53-111:294) Zinc finger protein 346 n=17 Tax=Eutheria RepID=ZN346_HUMAN E=9e-19 s/c=1.61 id=63% cov=83% ------------PVGREEVEHMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGME- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1260 0 0 D 2 * * 1000 * * * * * * * * * * 1000 * * * * * * 2 0 * * * * * * 1260 0 0 E 3 * * * 1000 * * * * * * * * * 1000 * * * * * * 3 0 * * * * * * 1260 0 0 F 4 * * * 1000 1000 * * * * * * * * * * * * * * * 4 0 * * * * * * 1260 0 0 G 5 * * * * * 1000 * * * * * * 1000 * * * * * * * 5 0 * * * * * * 1260 0 0 N 6 * * * * * * * * * * * 0 * * * * * * * * 6 0 * * * * * * 1260 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 1260 0 0 D 8 * * 0 * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1260 0 0 A 9 1000 * * * 1000 * * * * * * * * * * * * * * * 9 0 * * * * * * 1260 0 0 L 10 * * * * * * * * * 1000 * * 1000 * * * * * * * 10 0 * * * * * * 1260 0 0 D 11 * * 1000 * * * * * * * * * * * * * * * * 1000 11 0 * * * * * * 1260 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 1260 0 0 P 13 * * * * * * * * * * * * 0 * * * * * * * 13 0 * * * * * * 1373 0 0 V 14 * * * * * * * * * * * * * * * 1628 * 564 * * 14 0 * * * * * * 1373 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1373 0 0 K 16 1628 * * * * * * * 1591 * * * * * 1537 * * * * * 16 0 * * * * * * 1373 0 0 D 17 1628 * 1591 1537 * * * * * * * * * * * * * * * * 17 0 * * * * * * 1373 0 0 A 18 1591 * * 582 * * * * * * * * * * * * * * * * 18 0 * * * * * * 1373 0 0 V 19 * * * * * * * * * 2317 * * * * * * * 323 * * 19 0 * * * * * * 1451 0 0 N 20 * * 2317 2162 * * * * * * * 796 * * * * * * * * 20 0 * * * * * * 1451 0 0 S 21 * * * * * * 2162 * 2239 * * * * * 1420 2388 * * * * 21 0 * * * * * * 1451 0 0 L 22 * * * * * * * * * 2388 306 * * * * * * * * * 22 0 * * * * * * 1451 0 0 I 23 * * * * * * * 0 * * * * * * * * * * * * 23 0 * * * * * * 1451 0 0 R 24 * * * 2834 * * * * 3282 * * * * 634 3154 * * * * * 24 0 * * * * * * 1838 0 0 E 25 * * * 432 * * * * 1950 * * * * * * * * * * * 25 0 * * * * * * 1838 0 0 N 26 * * 2382 * * * 3152 * 2053 * * 1501 * * * 3302 * * * * 26 0 * * * * * * 1921 0 0 S 27 3010 * * * * * * * * * * 3483 * 1775 * 1406 3096 * * * 27 0 * * * * * * 1921 0 0 H 28 * 3719 1203 2141 * * 2313 * * * * * 4020 * * * * * * * 28 0 * * * * * * 2127 0 0 I 29 * * * * * * * 4003 * 93 * * * * * * * * * * 29 0 * * * * * * 2196 0 0 F 30 * 2766 * * 358 * * * * 3778 * * * * * * * * * * 30 0 * * * * * * 2262 0 0 S 31 3043 * * * * * * * * * * * * * 2766 2606 818 * * * 31 0 * * * * * * 2262 0 0 D 32 * * 590 3762 * * 4121 * * * * 4125 2766 * * * * * * * 32 0 * * * * * * 2262 0 0 T 33 * * 3778 * * * * * 4070 2766 * 2500 * * * 2680 1537 4536 * * 33 0 * * * * * * 2262 0 0 Q 34 * * * * 1543 * * * * * * * * 1918 * 2766 * * * 2029 34 0 * * * * * * 2262 0 0 C 35 * 0 * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 2461 0 0 K 36 * * * * * * 3511 * 508 * * * * 4332 3355 * * * * 4013 36 0 * * * * * * 2461 0 0 V 37 * * * * * * * 3100 * 2692 * * 3414 * * * * 656 * * 37 0 * * * * * * 2461 0 0 C 38 * 0 * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 2461 0 0 S 39 * 4568 3516 4353 * 2226 * * * * * 1470 * * * 2381 * * 4188 * 39 0 * * * * * * 2461 0 0 A 40 565 * * * * * * * * * * * * * * * * 1626 * * 40 0 * * * * * * 2461 0 0 V 41 * * * 3643 * * * * 3516 4568 4332 * * 2863 * 3750 3892 1115 * * 41 0 * * * * * * 2461 0 0 L 42 * * * * * * * * * 0 * * * * * * * * * * 42 0 * * * * * * 2461 0 0 I 43 * * * * * * * 1614 * 4353 * 1694 4188 1941 * * * * * * 43 0 * * * * * * 2461 0 0 S 44 * * * * 1886 3516 3414 * * * * * * * * 1095 3643 * * * 44 0 * * * * * * 2461 0 0 E 45 3892 * * 753 * * * * * * * * 3750 4545 3516 * 2892 * * * 45 0 * * * * * * 2461 0 0 S 46 * * 3643 * * * * * * 3516 * * 3750 3892 * 533 * * * * 46 0 * * * * * * 2461 0 0 Q 47 * * * 3414 * * 4422 * * * * * * 218 * * * * * * 47 0 * * * * * * 2461 0 0 K 48 2126 * * * * * * * 2403 * * * * * 995 3643 * * * * 48 0 * * * * * * 2461 0 0 L 49 * * * * * * * 1941 * 2071 4188 * * 2762 3750 * 2743 3726 * * 49 0 * * * * * * 2461 0 0 A 50 981 * * * * * * * * * * * * * * 1189 4192 * * * 50 0 * * * * * * 2461 0 0 H 51 * * * * * * 0 * * * * * * * * * * * * * 51 0 * * * * * * 2461 0 0 Y 52 * * * * 3414 * * * * * * * * * * * * * * 142 52 0 * * * * * * 2461 0 0 Q 53 * * * 995 * * * * * * 3643 3750 * 1963 * * * 3516 * * 53 0 * * * * * * 2461 0 0 S 54 * * * * * 1080 * * * * * * * * * 1127 * 3856 * * 54 0 * * * * * * 2520 0 0 R 55 * * 3436 2297 * * * * 844 * * * * * 2764 * * * * * 55 0 * * * * * * 2393 0 0 K 56 * * * * * * * 3279 741 * * 2643 * * 4149 3604 * * * * 56 0 * * * * * * 2393 0 0 H 57 * * * * * * 0 * * * * * * * * * * * * * 57 0 * * * * * * 2394 0 0 A 58 296 * * * * * * * * * * 3425 * 3434 * * * * * * 58 0 * * * * * * 2394 0 0 N 59 * * * * * * * * 1541 * * 2894 * 1230 * 3392 * * * * 59 0 * * * * * * 2394 0 0 K 60 * * * * * * * * 609 * * 1822 * * 4017 * * * * * 60 0 * * * * * * 2394 0 0 V 61 * * * * * * * * * 3425 * * * * * * * 141 * * 61 0 * * * * * * 2394 0 0 R 62 * * * * * * * * 2041 * * * * * 676 4058 * * * 3814 62 0 * * * * * * 2394 0 0 R 63 * * * * 2240 * 3434 * * 2281 * 3425 * 2661 2498 * * 4017 * * 63 0 * * * * * * 2394 0 0 Y 64 * * * * 3231 * * * * * * * * * * * * * * 162 64 0 * * * * * * 2394 0 0 M 65 * * * * 1256 * * * * 1720 3387 * * * * * 4380 3776 * 4028 65 0 * * * * * * 2341 0 0 A 66 3149 * * * * * * * * 2462 3862 * * 1216 * 2275 * * * * 66 0 * * * * * * 2281 0 0 I 67 3330 * * * * * * 1956 3998 3756 1740 * * * * 3665 * 2965 * * 67 0 * * * * * * 2177 0 0 N 68 * * * * * * 596 * 3182 * * 2602 * * 3980 * * * * * 68 0 * * * * * * 2064 0 0 Q 69 * * * 3559 * 685 * * 3652 * * * * 3403 3071 * * * * * 69 0 * * * * * * 2028 0 0 G 70 3071 * 3867 1493 * 3403 * * * 3559 2365 * * * * 3579 * * * * 70 0 * * * * * * 2028 0 0 E 71 * * * 852 * * * * 3300 * * * * 1538 * * * * * * 71 0 * * * * * * 2028 0 0 D 72 * * 1853 1446 * * * * 3155 * * 2035 * * * * * * * * 72 0 * * 0 * * * 1859 0 0 //