HHsearch 1.5 NAME d1ztxe1 FAM FILE d1ztxe1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ztxe1.a3m DATE Mon Mar 8 18:29:33 2010 LENG 101 match states, 101 columns in multiple alignment FILT 15 out of 19 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4033 -0.6096 SEQ >ss_dssp CCCSBCCSCEEEEEEEEECSSSCEEEEEEECCSSCSEECCEEEEEETTEEEECSEESSSSCEECCSSSSEEEEEEEECCSEEEEEEECCGGGCEEEEEEE C >sa_dssp EEEEEBDDCBECDEEBDECEECBBCBDACADBECABADACBCAADCDEDCEEDCDCDCEDBCAEDDEDECEBEACADACECDACABABEEEDCCDCDCEC E >ss_pred CCEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCEEEEEECC C >ss_conf 9212426618999612245674799999974888864656898616677613535882384034205776079996489985299983578636100127 9 >Consensus xTYxmCxxxfxxxKxPxdTgHgTVvxeVxyxgxxxPCkiPvxxxxxxxxxxxxGrLITxNPivtaxxxnxxvxIExePPfGdSyIxVGxgxxxlxxxWxk x >d1ztxe1 TTYGVCSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATANAKVLIELEPPFGDSYIVVGRGEQQINHHWHK S >UniRef50_Q91KY7(85-291:291) Envelope protein (Fragment) n=1 Tax=Spondweni virus RepID=Q91KY7_9FLAV E=7e-61 s/c=0.52 id=51% cov=101% MSYALCTGAFTFARTPSETIHGTATVELQYAGEDGPCKVPIVITSDTNSMASTGRLITANPVVTESGANSKMMVEIDPPFGDSYIIVGTGTTKITHHWHR A >UniRef50_B5KM05(485-774:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=1e-115 s/c=0.44 id=42% cov=98% LSFVTCGGTFSFSKQPSDTGHGTVIMEVTTTTSSVPCRL-LMGFEDASGKTIKGRLITVNPIV--ITANTGVIVEMEPPFGESFITVGSGTTMIKYAWHR K >UniRef50_Q91KY8(84-280:280) Envelope protein (Fragment) n=2 Tax=Aroa virus RepID=Q91KY8_9FLAV E=3e-78 s/c=0.72 id=49% cov=96% VTYAQCTGSFKMEKSPADTGHGTVVLDISYQGSEAPCKVPIVITPNLAEIEPVGRLVSAHPVVT--GKNVRTMIEVEPPYGDSYIIIGTGDGKLKQHW-- - >UniRef50_C1KC23(202-494:497) Envelope protein (Fragment) n=1 Tax=Chaoyang virus RepID=C1KC23_9FLAV E=1e-119 s/c=0.46 id=52% cov=98% STYVTCAQAFTFAKRPVDTGHGTVVFQVSYAGTDAPCKIPVAVTDKPNG-EHVGRLVTAHPFI--AKQNEKAVVEVEPPFGDSYIEIGAGTTKISEAWHK P >UniRef50_Q04538(490-773:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=1e-112 s/c=0.41 id=40% cov=94% TTYSMCdKAKFKWKRVPVDSGHDTVVMEVSYTGSDKPCRIPVRAVAHGVPAVNVAMLITPNP---TIETNGGGFIEMQLPPGDNIIYVGD----LSQQWF QK >UniRef50_Q9JAD5(465-749:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=1e-95 s/c=0.40 id=40% cov=95% LTYQMCSSSFVWHKRPVATQHGTVAMEVKYKGSDAPCRIPVSVEKEGYNGKNFGNLITANPF--AANNEAVVFLELEAPLGVSTIKVGGA----VFQWKQ E >UniRef50_Q1X881(479-776:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=1e-120 s/c=0.46 id=44% cov=98% TSYKMCTDKMSFVKNPTDTGHGTVVMQVKVP-KGAPCKIPVIVADDLTAAVNKGILVTVNPI--ASTNDDEVLIEVNPPFGDSYIIVGTGDSRLTYQWHK E >UniRef50_P27914(198-494:1683) Serine protease/NTPase/helicase NS3 (Fragments) n=3 Tax=Flavivirus RepID=POLG_DEN2T E=1e-118 s/c=0.43 id=42% cov=98% MSYSMCTGKFKIVKEIAETQHGTIVIRVQYEGDGSPCKIPF-EIMDLEKRHVLGRLITVNPIVT--EKDSPVNIEAEPPFGDSYIIIGVEPGQLKLDWFK K >UniRef50_B9TRQ0(501-788:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=1e-112 s/c=0.42 id=37% cov=98% ATYPVCPNTVVLTKEPVDTGHSTVVVEVKLSTFTMACRLAVTFTDAAGTKIT-GRLITVNPIITA--ADEKVTIEMEPPFGESFIEIGVTADSVKHHWNR K # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 3460 * * * * * * * * 2138 2193 * * * * 2760 2054 3740 * * 1 0 * * * * * * 3050 0 0 T 2 * * * * * * * * * * * * * * * 1550 603 * * * 2 0 * * * * * * 3056 0 0 Y 3 * * * * 3821 * * * * * * * * * * * * * * 106 3 0 * * * * * * 3056 0 0 G 4 2797 * * * * 3145 * * 4050 * * * 3012 3590 * 2891 2815 2331 * * 4 0 * * * * * * 3056 0 0 V 5 * * * * * * * * * 3825 1067 * * 3769 * * 2904 2028 * * 5 0 * * * * * * 3056 0 0 C 6 * 0 * * * * * * * * * * * * * * * * * * 6 191 3011 * 0 * * * 3056 1133 0 S 7 3992 * * * * 3821 * * 2306 * * * 3012 * * 2833 1322 * * * 7 0 * * * * * * 3056 0 0 K 8 4055 * 4050 4164 * 1209 * * 4126 * * 3012 * 3992 * 3590 3968 * * * 8 0 * * * * * * 3056 0 0 A 9 2391 * * * * 3677 * * 1667 * * * * * * 2175 2360 * * * 9 0 * * * * * * 3056 0 0 F 10 * * * * 439 * * * * * 4050 * * * * * * 3012 * 3677 10 0 * * * * * * 3056 0 0 K 11 * * * * * * * * 1597 * * * * * * 2256 1982 2272 * * 11 0 * * * * * * 3056 0 0 F 12 * * * * 1134 * * 3744 * 2403 3769 * * * * * * * 2271 * 12 0 * * * * * * 3056 0 0 L 13 2906 * * 2852 * * 3590 * 3011 4126 * * * * * 2288 3012 2889 * * 13 0 * * * * * * 3056 0 0 G 14 * * * * * 4126 * * 419 * * * * * 2361 * * * * * 14 0 * * * * * * 3056 0 0 T 15 3968 * * 1923 * * * * * * * 3106 * 3821 2777 3769 2279 4055 * * 15 0 * * * * * * 3056 0 0 P 16 * * * * * * * 3744 * * * * 217 * * * * 3941 * * 16 0 * * * * * * 3056 0 0 A 17 1616 * * * * * * * * * * * * * * 2823 3008 1293 * * 17 0 * * * * * * 3056 0 0 D 18 3590 * 501 2249 * * * * * * * * * * * * * * * * 18 0 * * * * * * 3056 0 0 T 19 * * * * * * * * * * * * * * * 2306 326 * * * 19 0 * * * * * * 3056 0 0 G 20 * * * * * 501 * 3825 * * * * * 2166 * * * * * * 20 0 * * * * * * 3056 0 0 H 21 * * * * * * 0 * * * * * * * * * * * * * 21 0 * * * * * * 3056 0 0 G 22 * * 3011 * * 570 * * * * * * * 3677 * 3012 * * * * 22 0 * * * * * * 3056 0 0 T 23 * * * * * * * * * * * * * * * * 0 * * * 23 0 * * * * * * 3056 0 0 V 24 3825 * * * * * * 3744 * * * * * * * * * 226 * * 24 0 * * * * * * 3056 0 0 V 25 3590 * * * * * * 2747 * 3941 * * * * * * 3825 661 * * 25 0 * * * * * * 3056 0 0 L 26 * * * * 3992 * * 3744 * 2423 1264 * * * * * * 1945 * * 26 0 * * * * * * 3056 0 0 E 27 * * 3769 772 * * * * 3677 * * * * 2409 3744 * * * * * 27 0 * * * * * * 3056 0 0 L 28 * * * * * * * 3769 * 2445 * * * * * * * 429 * * 28 0 * * * * * * 3056 0 0 Q 29 * * * * * 3968 * * 1284 * * * * 1953 * 2348 3821 * * * 29 0 * * * * * * 3056 0 0 Y 30 * * * * 3968 * * * * 3012 * * * * * * 3821 2851 * 730 30 0 * * * * * * 3056 0 0 T 31 2906 * * 2839 * * * * 3590 * * * 4050 3769 * 1910 2035 * * * 31 90 * 4050 * * * * 3056 0 0 G 32 * * * * * 499 * * 3523 * * * * * * * 2284 * * * 32 0 * * * * 0 * 3031 0 1000 T 33 3677 * 3744 3825 3012 * * * 4050 * * * * * * 1543 2005 * * * 33 95 * 3968 * * * * 3056 0 0 D 34 * * 1006 3735 * 2824 * * * * * * * * * 3750 2242 * * * 34 125 * 3592 * * 0 * 3016 0 1000 G 35 1423 * * * * 2340 * * 3919 * 2884 * * * 3820 3659 * 3679 * * 35 0 * * * * 0 * 2975 0 1000 P 36 3012 * * * * * * * * * * * 191 * * * * * * * 36 0 * * * * * * 3056 0 0 C 37 * 0 * * * * * * * * * * * * * * * * * * 37 0 * * * * * * 3056 0 0 K 38 * * * * * * * * 944 * * * * * 1059 * * * * * 38 0 * * * * * * 3056 0 0 V 39 * * * * * * * 727 * 2360 * * * * * * * 2313 * * 39 106 * 3821 * * * * 3056 0 0 P 40 2854 * * * * * * * * * * * 215 * * * * * * * 40 0 * * * * 0 * 2999 0 1000 I 41 * * * * 2839 * * 1960 * 3821 * * * * * * * 909 * * 41 209 * 2888 * * * * 3056 0 0 S 42 2672 * * * * * * 3863 * * 3626 * * * 2897 1750 3356 2607 * * 42 0 * * * * 0 * 2977 0 1514 S 43 3011 * * 3744 3977 3821 * 2797 * * * * * * * 3145 2993 1814 * * 43 0 * * * * * * 3056 0 0 V 44 4050 * * 3590 2930 * * 2710 * * * * * 3941 * * 1888 2076 * * 44 0 * * * * * * 3056 0 0 A 45 2076 * 1599 3821 * * * * 3590 * 3744 * 3769 * * 3825 4047 * * * 45 0 * * * * * * 3056 0 0 S 46 3977 * 1570 2755 * * 3011 * 3992 * * 3769 * * * 2386 * * * * 46 0 * * * * * * 3056 0 0 L 47 2360 * * * * 2271 * * 3941 1637 3677 * 3992 * * * 3825 * * * 47 0 * * * * * * 3056 0 0 N 48 2901 * * 3744 * 2959 * * * * * 2021 * 3677 * 3821 4050 3011 * 3590 48 97 * 3941 * * * * 3056 0 0 D 49 3960 * 3049 3680 * 2280 * * 3537 * * 3482 2936 * * 2672 3883 * * * 49 100 * 3895 * * * 0 3025 0 1000 L 50 2866 * * 3833 * 3398 * 3532 2701 3923 2769 3529 * * 3474 * 3871 * * * 50 0 * * * * 0 * 2992 0 1459 T 51 3825 * * 2876 * * 3744 2819 2801 * * * * * * * 2444 2003 * * 51 0 * * * * * * 3056 0 0 P 52 * * * * * * 3992 2930 * * * 1532 2423 * * 3825 2959 3744 * * 52 95 * 3977 * * * * 3056 0 0 V 53 * * * * 3550 * * * 2852 3695 * * * 3859 3609 * 2632 1371 * * 53 0 * * * * 0 * 3034 0 1000 G 54 3011 * * * * 303 * * * * * 3941 * * * * * * * * 54 0 * * * * * * 3056 0 0 R 55 * * * * * * * 4050 * * 3011 3590 * * 612 * * 3677 * * 55 0 * * * * * * 3056 0 0 L 56 * * * * * * * * * 208 4164 * * * * * * 3677 * * 56 0 * * * * * * 3056 0 0 V 57 * * * * * * * 708 * * * * * * * * * 1367 * * 57 0 * * * * * * 3056 0 0 T 58 * * * * * * * * * * * * * * * 3769 110 * * * 58 0 * * * * * * 3056 0 0 V 59 1284 * * * * * * * * * * * 3011 * * * 3677 1369 * * 59 0 * * * * * * 3056 0 0 N 60 * * * * * * 2876 * * * * 211 * * * * * * * * 60 0 * * * * * * 3056 0 0 P 61 * * * * * * * * * * * * 0 * * * * * * * 61 191 * 3011 * * * * 3056 0 0 F 62 * * * * 2088 * * 1166 * * * * * * * * * 1971 * 3966 62 442 * 1922 * * * 0 2901 0 1134 V 63 * * * * * * * 1802 * * * * * * * * * 487 * * 63 346 * 2231 * * * 0 2563 0 2099 S 64 3147 * * * * * * * * * * * * * * 3113 374 * * * 64 722 * 1344 * * 549 1661 2349 0 2464 V 65 953 * * 3001 * * * * * * * * * * * 3505 2481 3451 * * 65 304 * 2397 * * 1249 788 2732 0 2183 A 66 1697 * * * 3156 * * 2333 * * 3509 * * * * 1771 * * * * 66 0 * * * * 640 1481 2692 0 2027 T 67 * * 3731 1683 * 2647 * * 3712 * * 3433 * * * * 1813 * * * 67 0 * * * * 0 * 2940 0 1066 A 68 1131 * * * * * * * 2230 * * 2270 * 3992 * * 4055 * * * 68 0 * * * * * * 3056 0 0 N 69 3677 * 1949 2755 * * * * * * * 958 * * * * * * * * 69 0 * * * * * * 3056 0 0 A 70 2350 * 4050 2420 * 3011 * * 3941 * * * * * * 2784 2747 3769 * * 70 0 * * * * * * 3056 0 0 K 71 * * * 2851 * 2360 * * 1433 * * * 2839 * 3769 * * 3590 * * 71 0 * * * * * * 3056 0 0 V 72 3992 * * * * 3011 * * * * 3825 * * * * * 3769 580 * * 72 0 * * * * * * 3056 0 0 L 73 * * * * 2271 * * 3821 * 2527 2171 2839 * * * * 3012 3992 * * 73 0 * * * * * * 3056 0 0 I 74 * * * * * * * 606 * 3590 * * * * * * * 1944 * * 74 0 * * * * * * 3056 0 0 E 75 * * * 0 * * * * * * * * * * * * * * * * 75 0 * * * * * * 3056 0 0 L 76 3744 * * * * * * 2985 * 2833 1649 * * * * * 3941 1864 * * 76 0 * * * * * * 3056 0 0 E 77 * * 3825 585 * * * * * * * 4050 * 3011 * * * 3677 * * 77 0 * * * * * * 3056 0 0 P 78 3590 * * * * * * * * 3011 * * 335 * * * * * * * 78 0 * * * * * * 3056 0 0 P 79 * * * * * * * * * * * * 0 * * * * * * * 79 0 * * * * * * 3056 0 0 F 80 * * * * 475 * * * * 3590 * * 3011 * * * * * * 3769 80 0 * * * * * * 3056 0 0 G 81 * * * * * 0 * * * * * * * * * * * * * * 81 0 * * * * * * 3056 0 0 D 82 * * 789 1565 * * * * * * * * * * * * * 3590 * * 82 0 * * * * * * 3056 0 0 S 83 * * * * * * * * * * * 3011 * * * 191 * * * * 83 0 * * * * * * 3056 0 0 Y 84 * * * * 2360 * * 3011 * * * * * * * * 3590 3677 * 944 84 0 * * * * * * 3056 0 0 I 85 * * * * * * * 0 * * * * * * * * * * * * 85 0 * * * * * * 3056 0 0 V 86 * * * 2420 * * * 1842 3590 * * * * * * * 2747 2489 * 3011 86 0 * * * * * * 3056 0 0 V 87 * * * * * * * 1276 * * * * * * * * * 769 * * 87 0 * * * * * * 3056 0 0 G 88 * * * * * 0 * * * * * * * * * * * * * * 88 0 * * * * * * 3056 0 0 R 89 2967 * 3011 * * 3590 * * * * * 3677 * * 3145 3821 2291 2332 * * 89 191 * 3011 * * * * 3056 0 0 G 90 3344 * * 3601 * 553 * * * * * * * * * * 2862 * * * 90 150 * 3344 * * * 0 2901 0 1134 E 91 2717 * 2061 1929 * * * * * * * * 3461 * * * 1972 * * * 91 0 * * * * * 0 2761 0 1548 Q 92 * * 1960 * * 2474 * * 2698 * * * * 3761 * 3639 1972 * * * 92 0 * * * * * 0 2761 0 1548 Q 93 3575 * * * * * * * 1971 * 3490 * * 2091 2433 2717 * * * * 93 0 * * * * 756 1293 2761 0 1548 I 94 * * * * * * * 1540 * 940 * * * * * * * 2892 * * 94 0 * * * * 0 * 2946 0 1000 N 95 * * * * * * * * 1294 * * 2498 * * * 3023 2258 3590 * * 95 0 * * * * * * 3056 0 0 H 96 * * * 3992 3590 * 1428 * * 3744 * * * 2332 * * * * * 2256 96 0 * * * * * * 3056 0 0 H 97 2904 3941 3744 * * * 1392 * * * * * * 1532 * * * * * * 97 0 * * * * * * 3056 0 0 W 98 * * * * * * * * * * * * * * * * * * 0 * 98 0 * * * * * * 3056 0 0 H 99 * * * * 1826 * 1000 * 3517 * * 2939 * * * * * * * * 99 0 * * * * * * 3003 0 0 K 100 * * * * * * * * 1275 * * * * 1732 1807 * * * * * 100 0 * * * * * * 3003 0 0 S 101 3567 * * 1709 * * * * 1096 * * * 3720 * * 3918 * * * * 101 0 * * 0 * * * 2991 0 0 //