HHsearch 1.5 NAME d1zh5a1 FAM FILE d1zh5a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1zh5a1.a3m DATE Mon Mar 8 15:52:40 2010 LENG 99 match states, 99 columns in multiple alignment FILT 102 out of 306 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.4581 1.6762 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHTTTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCCC >sa_dssp EEEEEDDECBDEABEBABDBACDEBBDECEDADDBCEEDECCACAECACEBEEADECCDDCEBACDABEECEDECBDCBEEEDDACCBEEDEDEEEDEE >ss_pred CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCEEECCCCCCCCCCCCCC >ss_conf 986127999999999998753762434239999981054882545111362999853699999999997373012210468747304888878864469 >Consensus xxxxexxxlxxxIxxQvEfYFSdxNLxxDxfLrxxmxxxxGxVpixxixxFxrikxltxxxxxixxAlxxSxxxxvexxxdxxxvrrxxxxpxpexxxe >d1zh5a1 GDNEKXAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIXIKFNRLNRLTTDFNVIVEALSKSKAELXEISEDKTKIRRSPSKPLPEVTDE >UniRef50_B6KCL5(75-169:543) La domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KCL5_TOXGO E=1e-08 s/c=0.64 id=26% cov=92% -------QLKQRIKRQVEYYLSDESLAYDAFFQSKMREaaQQGkgeSLDLRFVLSSPRIKSLNLTKAEILAAIADSVAVKVKEEADGTTLL-YRETPLPE LQE- >UniRef50_B2W5M7(113-208:450) RNA-binding La domain containing protein n=2 Tax=Pleosporineae RepID=B2W5M7_PYRTR E=0.0002 s/c=0.49 id=27% cov=89% ----------EEIRSQVEFYFSRANLASDHhmFMETEGPKNKP-VSIHHVCTFSRMRRFKP-YSAVVAALRDSKDlvvvddgEYSKPGSEAVKRREAITV PVEDGDDE >UniRef50_C5LTC9(394-471:488) Putative uncharacterized protein n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LTC9_9ALVE E=6e-09 s/c=0.79 id=27% cov=76% ------------IRRQVEWWLNKPNWDKDEHLRSLAYPGTHWIPVQELMKFERLRDLSDDQAEVVHVLRTercgKQDPRLEVSPDGYYVR---------- --- >UniRef50_UPI0000EBD400(148-244:730) PREDICTED: similar to La ribonucleoprotein domain family, member 5 n=8 Tax=Euteleostomi RepID=UPI0000EBD400 E=2e-16 s/c=0.89 id=26% cov=93% ---ESQEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQ-YVPITTVANLDHIKKLSTDMDLIVEVLR--SLPLVQVDEKGEKVRPNQNrcivilREIP EST-- >UniRef50_Q550L4(15-107:781) Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q550L4_DICDI E=9e-12 s/c=0.77 id=24% cov=95% ---SDFDSIKKSIQSQVQYYFSEENLRRDIHLRCNMDE-EGWVSIPFICGFNRMRSF--ESSTVIETLKSLNSLELDLQNNRVRILDNSKRKLWILTQE >UniRef50_C4JQY0(624-714:1099) Predicted protein n=2 Tax=Onygenales RepID=C4JQY0_UNCRE E=7e-17 s/c=0.97 id=28% cov=87% -------SLMSMISMQLEYYFSVDNLCKDLFLRRHMDS-QGFVLLSVIAAFKRIKSLTEDLELLRLVCRQLKNVEFRPGEDGldrIRKRDKWEQWV---- -- >UniRef50_A2G1W4(61-154:252) La domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2G1W4_TRIVA E=3e-09 s/c=0.67 id=28% cov=95% -SNSSQDRL-EIIRDQVEYYLSASSLRDNKNLRTFIKKSiDRFVPLDTFLEYNKMKNLCVTFNEIHDACVISNDL--ELNTEGNAVR--TKLPVNINEQE >UniRef50_A8BQV2(11-87:348) La ribonucleoprotein, putative n=2 Tax=Giardia intestinalis RepID=A8BQV2_GIALA E=1e-07 s/c=0.75 id=25% cov=78% -------------LTQLEYYFSNYNITRDKWMLDKLREsTDQSIELSVVNDFPKLKAYGLTPEQLRDAAIDSPVI--EVSSD-LRVKRRAPIP------- >UniRef50_Q23FX4(724-806:967) Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23FX4_TETTH E=4e-05 s/c=0.59 id=24% cov=79% --------------RTVNYYYSDKNYYQDKYILEHSNrNQDHYMPLSLLLNFPKIKKEVNSIEDLVQKLQtfikiTNQVIQFELNADKTMIRKKQLK--- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1910 0 0 D 2 * * 1657 * * * * * * * * * * * * 991 * 2476 * * 2 0 * * * * * * 2781 0 0 N 3 * * * 3180 * * * * * * * 727 * * * 1807 * * * * 3 0 * * * * * * 3403 0 0 E 4 * * 4040 1059 * * * * * 4088 * * 3091 3493 * 2363 * * * * 4 0 * * * * * * 4022 0 0 K 5 * * 4057 913 * * * * 2444 * * * 4693 * * 2828 * * * 4458 5 0 * * * * * * 4382 0 0 X 6 * * 3949 2706 4032 2872 * 3543 4479 4416 * * 3687 3186 4424 * 3615 3457 * * 6 0 * * * * * * 4379 0 0 A 7 1986 5120 1358 3601 * * * * 3496 5190 * * * 4779 * 5512 3798 * * * 7 0 * * * * * * 4778 0 0 A 8 2755 * 2368 2647 * * * 5162 4458 4648 * 6060 5456 2908 4323 3057 6235 * * 5020 8 0 * * * * * * 4984 0 0 L 9 5966 * * 5771 4883 * * 2994 5728 720 4085 * 5272 5417 * 5848 5885 4723 * * 9 72 * 4365 * * * * 4925 0 0 E 10 3610 6180 * 2920 * 5329 4956 * 2054 2718 5118 * * 4337 2829 5340 6223 5867 * 4378 10 0 * * * * 0 * 4969 0 1583 A 11 2423 * 3911 1910 * 6823 6527 * 4039 6630 6478 4082 5922 3042 4342 4600 3968 6295 * 6066 11 0 * * * * * * 5335 0 0 K 12 2899 5269 3891 3502 6502 * 5119 5725 2121 * 4908 4138 6815 3625 2688 5041 * 5550 * 6833 12 16 6539 * 2322 322 * * 5423 1000 0 I 13 6170 * * * * * * 903 * 1936 6296 * * * * * 6420 2595 * * 13 0 * * * * * * 5515 0 0 C 14 4774 4656 6040 * * * 6874 3627 1937 3115 * 6266 * 3932 2078 6050 4592 3820 * * 14 12 6900 * 1000 1000 * * 5549 1000 0 H 15 5324 * 4356 3789 * 5660 5134 * 1756 5671 6119 3794 * 3766 2068 3710 6054 * * * 15 0 * * * * * * 5625 0 0 Q 16 4873 * * * * * 6205 * * 6044 * * * 151 * * 4764 * * * 16 0 * * * * * * 5597 0 0 I 17 * * * * * * * 1760 * 2474 4295 * * * * * * 1078 * * 17 9 7299 * 3907 100 * * 5602 1000 0 E 18 * * 4357 324 * * * * * 5239 * 4412 * 5886 5414 4702 * * * * 18 0 * * * * * * 5602 0 0 Y 19 * * * * 887 * 5612 * * 5373 * * * * * * * * 5516 1348 19 0 * * * * * * 5602 0 0 Y 20 * 6180 * * * * * * * 6167 * * * 5931 * * * * 4656 126 20 0 * * * * * * 5602 0 0 F 21 * * * * 345 * * * * 2475 * * * * * * * * * 4939 21 0 * * * * * * 5602 0 0 G 22 * 5709 * * * 3257 * * * * * 4248 * * * 307 6034 * * * 22 0 * * * * * * 5602 0 0 D 23 4220 * 841 3972 * * * 5730 5010 4087 * 4420 4297 * 4043 6034 6659 4952 * * 23 0 * * * * * * 5602 0 0 F 24 2311 6167 3292 1957 5581 5015 * 6643 4611 6565 5931 6928 5516 4808 5644 2708 5892 5271 * 6188 24 0 * * * * * * 5602 0 0 N 25 6812 6186 * * * * * * * * * 134 * * * 3926 * * * * 25 0 * * * * * * 5602 0 0 L 26 * * * * 4855 * * 3826 * 357 5540 * * * * 5612 * 5804 5516 4939 26 0 * * * * * * 5602 0 0 P 27 2979 3856 5516 5106 * 5698 5110 4700 5433 3494 7251 5507 3054 4630 2574 3939 4566 4100 * 4982 27 0 * * * * * * 5602 0 0 R 28 5931 * 6132 * * 5565 4046 * 1984 * 6655 4535 * 4131 1853 3737 3077 5504 * 4952 28 0 * * * * * * 5602 0 0 D 29 * * 84 * * * * * * * * 4494 * * * * 6336 * * * 29 0 * * * * * * 5602 0 0 K 30 3815 * 5147 3618 4330 6186 4932 4022 2181 4011 5531 5491 6506 * 3068 3678 4580 4450 * 4674 30 17 6390 * 1000 1000 * * 5602 1000 0 F 31 * * * * 949 * 3037 * 5881 * * 6132 * * * 5931 * * 6188 1743 31 0 * * * * * * 5602 0 0 L 32 * * * * 2884 * * 5527 * 508 2839 * * * * * * * * * 32 47 5504 6612 674 1422 * * 5604 1552 0 K 33 * * * 6389 5013 6556 5548 5298 3140 2764 5563 * * 3439 1167 5321 6930 6529 4777 * 33 0 * * * * 0 * 5597 0 1000 E 34 5381 6013 5342 2891 6661 3765 * 6058 2243 * 6740 3863 * 3017 3560 2573 4757 * * * 34 19 6286 * 0 * * * 5604 1000 0 Q 35 5242 * * 3416 4872 * 2786 3834 2828 2991 4535 4671 * 2585 4110 6612 5130 6571 * 7015 35 0 * * * * * * 5604 0 0 I 36 5520 5348 * 7152 6545 6397 * 2301 * 3505 1405 * * * 5613 5022 3684 3183 * 5951 36 266 2859 5036 0 * * * 5604 3565 0 K 37 6338 6247 2031 3901 * 3641 5750 * 2828 6757 6840 3530 6313 3708 3510 4697 3857 6382 * 5493 37 258 3884 3379 3885 101 0 * 5581 2772 1919 L 38 4545 * 4807 2304 * 4483 6388 * 2962 7157 * 2315 4827 4673 4756 2467 5447 6536 * * 38 379 3950 2587 1167 851 0 * 5590 2787 3132 D 39 4131 6732 2438 5219 * 4470 3912 6550 3701 * * 2668 3080 3563 5827 3299 5336 5738 * * 39 149 3347 * 0 * 0 * 5600 3152 3640 E 40 5637 * 1644 1875 * 6258 7070 * 4275 * * 4133 4579 2416 * * 5108 * * * 40 91 4907 5157 0 * * * 5604 2213 0 G 41 * 6676 4961 * 7200 494 4421 * * * 5636 3802 6367 4966 5287 5609 6313 * * * 41 131 5579 3918 1092 914 0 * 5654 1639 1819 W 42 6304 6714 * 6950 2186 5051 * * 4077 7101 5642 6544 6312 * 5522 5196 * 6095 1915 1831 42 74 4327 * 0 * 0 * 5599 2071 2887 V 43 6545 6213 * * 6233 * * 2238 * 3232 5527 * * * * * * 684 * * 43 11 7070 * 3322 152 * * 5604 1000 0 P 44 4741 * 2975 3991 * 6868 * * 5903 4911 * 6011 1041 6933 6574 2555 5392 * * * 44 0 * * * * * * 5604 0 0 L 45 6252 * * * 5084 * * 1402 * 1273 4978 * * * * * * 2904 * * 45 0 * * * * * * 5604 0 0 E 46 3185 * 3026 3071 5613 5771 4611 * 2968 * * 5301 5930 4590 4986 2018 3659 * * * 46 0 * * * * * * 5604 0 0 I 47 5508 * * 4079 3822 * 4536 3807 6619 2204 * 5567 * * 5296 * 2064 2262 * 6367 47 0 * * * * * * 5604 0 0 X 48 * * * * 3091 * * 1176 * 2066 4745 * * * * * * 2608 * * 48 0 * * * * * * 5611 0 0 I 49 1768 3662 * 6644 5849 6035 5527 4673 5688 1536 4612 6193 * * * 4234 4809 5942 * * 49 0 * * * * * * 5604 0 0 K 50 4153 * 4750 4543 * 3169 6612 * 2833 * 6673 2629 * 4327 6413 1982 3109 * * * 50 0 * * * * * * 5604 0 0 F 51 * 3627 * * 255 * * * * 5186 * * * * * 6353 5933 * * 5317 51 0 * * * * * * 5604 0 0 N 52 * * 6184 5520 6685 5692 6534 * 2030 * * 1534 3039 3673 4980 4050 * 6571 * 4969 52 0 * * * * * * 5604 0 0 R 53 6035 6258 * * * * 6184 * 1369 6123 5784 * * * 894 * * * * * 53 0 * * * * * * 5604 0 0 L 54 * * * * * * * 1802 * 2479 1929 * * * * * * 1882 * * 54 0 * * * * * * 5604 0 0 N 55 4989 * * * 6633 * * 4564 1165 5827 * 5093 * 3654 1875 6233 6538 4969 * 6035 55 12 6878 * 4700 57 * * 5604 1000 0 R 56 3054 6429 4382 4095 * 5778 * 5750 3172 * 7068 4036 * 2614 3653 2032 4922 6445 6213 * 56 0 * * * * * * 5604 0 0 L 57 * * * 5527 3343 * 6123 4246 6403 704 3296 * * * * * 6878 4515 * 4927 57 100 4420 5604 2814 221 * * 5604 2193 0 T 58 6268 4209 6768 * * 4432 4176 5999 3869 3786 * 4226 * 5265 6959 2602 1462 4311 * * 58 84 4150 * 497 1780 965 1036 5588 2710 1614 T 59 3221 5615 3831 4122 * 5516 * * 3281 3880 * 3665 3471 4411 4457 4064 2538 4098 * * 59 89 5153 4967 2519 277 0 * 5590 2002 1000 D 60 6006 * 1358 3544 * 6212 * * 4007 6715 6338 2214 7101 6782 * 4357 2939 * * * 60 64 5488 5544 3063 184 0 * 5544 1576 1536 F 61 5041 * * 3327 4334 5474 * 2975 4402 3049 4143 4548 3871 4507 5715 4970 5570 3621 4624 3363 61 45 5017 * 2315 324 * 0 5581 2078 1093 N 62 3025 * 3047 2668 * 5040 4771 * 3552 * * 2960 4419 3627 4615 3111 4882 * * * 62 16 6470 * 2807 222 0 * 5581 1000 1093 V 63 3990 * 3146 3165 4812 * * 5086 6336 1823 5712 6244 * 4165 6857 5347 3843 2713 * 6759 63 0 * * * * * * 5585 0 0 I 64 6385 * * * * * * 1334 * 1937 * * 6385 * * * 6053 1722 * * 64 12 6903 * 2807 222 * * 5585 1000 0 V 65 2594 5620 * 5142 * 5969 5490 2792 3702 3232 4807 * * 6996 3705 * 4495 1970 * * 65 29 * 5656 * * * * 5579 0 0 E 66 3242 * 2917 1976 * 5497 4783 * 3084 4408 * 3655 6086 3575 5561 5214 6429 * * 4427 66 11 7047 * 1585 585 0 * 5566 1000 1559 A 67 504 4999 * 4814 * * * 5566 5523 * * * * * * 4365 5754 3083 * * 67 33 5466 * 2587 263 * * 5561 1549 0 L 68 5150 3780 * * 4977 * * 3206 * 855 4485 * * * 6573 * * 2845 * 6412 68 39 * 5237 * * * * 5561 0 0 S 69 3518 6726 7061 3838 * 5963 6544 5253 1903 6256 * 6313 * 2993 1987 3870 6597 5425 * * 69 71 5510 5257 2322 322 * 0 5533 1000 1667 K 70 5248 6267 2786 3158 * 4291 * 5305 3369 3132 7227 3393 * 3496 5130 3402 3577 6882 * 6583 70 148 3895 5047 1789 493 951 1051 5517 2482 2417 S 71 4538 5686 * 6523 * 6219 6185 * 3766 4185 * 5227 * * * 444 * 6781 * * 71 44 6191 5965 2322 322 1213 814 5555 1000 2632 K 72 4359 * 3870 3113 * 5779 * * 2823 6491 6600 3750 4671 3523 4947 2586 2522 6301 * * 72 142 6481 3596 2807 222 1322 737 5564 1000 2502 A 73 4904 * 3673 4409 4781 5899 4810 4319 3613 3702 5209 4458 5438 5752 6705 2378 4236 2613 * 6485 73 84 5275 5015 2013 411 1921 442 5522 1669 3554 E 74 5921 6441 3744 3581 6019 5506 * 3382 5293 1368 * * 4211 4745 7083 5456 6931 2858 * * 74 495 6691 1833 3585 126 540 1679 5561 1000 3516 L 75 6178 * 4750 2499 5139 * * 2815 4534 2256 4934 * * 3786 5036 6089 5991 2756 * 4840 75 170 6258 3351 2807 222 3369 147 5454 1000 4432 X 76 5014 * * 6129 3605 * * 3553 * 1854 5603 * * * * 4453 * 1297 * 4745 76 0 * * * * 196 2979 5473 0 4545 E 77 5552 6789 4866 932 * * 6229 5189 3738 * * 5457 * 3638 3759 4347 4896 4807 * * 77 0 * * * * 0 * 5558 0 2289 I 78 4789 * 7109 5113 4747 4204 * 3509 6239 1745 5478 6487 4742 6271 * 6525 6869 1584 * * 78 67 4846 6525 294 2437 * * 5553 1950 0 S 79 6358 6296 2585 4461 * 3978 6317 * 5702 * 6532 2317 5713 4139 * 1573 5455 * * 5529 79 12 6973 * 1585 585 0 * 5552 1000 1000 E 80 4090 6190 2968 1491 * 4132 * 5400 3896 6515 * 3206 3958 5173 * 4281 4904 * * * 80 0 * * * * * * 5553 0 0 D 81 4348 6519 1085 2584 * 5493 5343 6361 5511 7085 5783 4108 * 6139 * 3916 5169 5100 * * 81 21 * 6079 * * * * 5553 0 0 K 82 4873 6554 * 4488 5450 1501 5553 6537 2194 6213 5546 3739 * 5200 3860 5885 4760 * 5372 * 82 36 5351 * 1585 585 0 * 5563 1413 1000 T 83 * 6353 6406 3331 * 5506 7004 3418 3419 2882 5352 4675 * 4253 6703 6484 2217 2745 * 5438 83 10 * 7144 * * * * 5577 0 0 K 84 3972 * 6461 6554 5586 * * 5512 2029 5112 3829 4794 * 5349 1600 3894 4794 6574 * 5433 84 43 5632 6779 2907 206 * 0 5575 1530 1000 I 85 * 4909 * * * * * 1912 4520 3491 4365 * 5451 * 4267 * 6394 1207 * * 85 0 * * * * 0 * 5567 0 1696 R 86 6442 * * * * 4580 6521 6216 2138 5463 * * * 6204 718 * 6402 5169 * 6454 86 97 4835 5059 1259 780 * * 5569 1912 0 R 87 6850 * 3368 4871 * 6103 * * 3404 * * 4487 4684 5782 709 6437 6305 6198 * * 87 205 6235 3069 1000 1000 937 1066 5422 1000 1636 S 88 4073 * 4323 6856 * 5047 * 4669 1815 4833 6460 3030 * * 2744 4091 6606 3791 4532 5280 88 118 4679 4666 0 * 2177 361 5488 1883 3488 P 89 4401 * 6470 3938 * 5781 * 3947 3773 * * 3905 2826 3805 4906 5434 3776 2830 2814 5138 89 0 * * * * 420 1985 5536 0 3361 S 90 4408 * 4200 3226 * * * 6015 2509 3004 * 4480 2881 3617 * 3820 3115 5181 * * 90 41 5148 * 2585 263 0 * 5565 1358 2104 K 91 6798 6330 * 4499 4459 6369 6169 4289 2636 2208 5129 5180 6032 3314 3080 * 4403 4748 5713 4621 91 68 5125 5825 0 * * * 5563 1654 0 P 92 4546 * 6021 3981 * * * 5930 3932 * * * 1040 6480 * 6160 * 3660 2279 * 92 45 5011 * 0 * 0 * 5399 1591 1000 L 93 5497 * 6472 3884 4663 6081 * 2551 * 1499 * * 6341 5911 6433 * 5857 1929 * * 93 22 6066 * 0 * * * 5341 1000 0 P 94 4134 * * 3159 * 6150 * * 4054 5727 * 4484 930 6123 * 3597 5304 * 5750 5187 94 22 6051 * 0 * * * 5225 1000 0 E 95 4441 * 2240 1083 * * * 4076 4522 * * * 5795 4202 5624 * 4538 4969 * * 95 0 * * * * * * 5198 0 0 V 96 5658 6109 5384 4666 5387 4522 6010 3728 4380 2230 * 2630 5243 4884 * 3459 5710 2881 * 6038 96 0 * * * * * * 5136 0 0 T 97 * * 2277 4023 * * * 3283 5225 * 5618 3369 * 4135 * 3126 1922 4319 * * 97 0 * * * * * * 5048 0 0 D 98 5416 * 1342 2324 * * * * * * * 3458 4987 2700 3790 * * 4892 * * 98 0 * * * * * * 4828 0 0 E 99 * * 4315 356 * * * * 3590 * * * * 3554 * * * * * * 99 0 * * 0 * * * 4450 0 0 //