HHsearch 1.5 NAME d1z66a1 FAM FILE d1z66a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1z66a1.a3m DATE Mon Mar 8 18:31:33 2010 LENG 93 match states, 93 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4278 0.5700 SEQ >ss_dssp CCSBCCTTTCEEEEEEEECSSSSEEEEEECSSCSSEECCEEEEETTBTTSCCCCCSSCCCEEBTTBSEEEEECCSSEEEEEEETTEEEEEEEC >sa_dssp EEDEADEECAEDDECADDCEEDBABACACDDEAECAEBDCEABBDDEEEEEABDCEDEEBCADEDABCEACABCEECCABACACDBDDECEBE >ss_pred CCEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCEEECCCEEEEEECCCCCCCEEEEEEEEHHHCCC >ss_conf 903447864799963334567479999995788843557999527777714635871485187176389996389985299991042240049 >Consensus TYxmCtxsxFxxxKxPxdTgHgTVvmeVxyxgsxPCkIPvxxxxxxxxxxxxGrLITxNPvvtxnxxvxIExepPfGdSyIxVGxlxxxWxkk >d1z66a1 TYTVCDKTKFTWKRAPTDSGHDTVVMEVGFSGTRPCRIPVRAVAHGVPEVNVAMLITPNPTMENNGGGFIEMQLPPGDNIIYVGDLNHQWFQK >UniRef50_Q1X881(581-677:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=9e-30 s/c=1.34 id=39% cov=100% SYKMCTD-KMSFVKNPTDTGHGTVVMQVKVPKGAPCKIPVIVADDLTAAVNKGILVTVNPIASTNdDEVLIEVNPPFGDSYIIVGtgdsRLTYQWHKE >UniRef50_Q7T918(589-685:3425) Polyprotein n=3 Tax=Flavivirus RepID=Q7T918_9FLAV E=5e-29 s/c=1.32 id=39% cov=100% TYTMC-KGGYSFSKTPVDSGHQTVIMKVKVSKATPCRIPVAVIDSMQSNINRGVVVTTNPVaFEAATEVMIEVVPPFGESVITIGNgedrLTYQWHQE >UniRef50_C1KC23(300-395:497) Envelope protein (Fragment) n=1 Tax=Chaoyang virus RepID=C1KC23_9FLAV E=2e-26 s/c=1.25 id=37% cov=98% TYVTCAQA-FTFAKRPVDTGHGTVVFQVSYAGTDaPCKIPV-AVTDKPNGEHVGRLVTAHPFIAkQNEKAVVEVEPPFGDSYIEIGagttKISEAWHK- >UniRef50_B5KM05(581-677:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=4e-25 s/c=1.19 id=34% cov=99% SFVTCGGT-FSFSKQPSDTGHGTVIMEVTTTTSSvPCRL-LMGFEDASGKTIKGRLITVNPiVITANTGVIVEMEPPFGESFITVGSgttmIKYAWHRK >UniRef50_Q91KY8(186-280:280) Envelope protein (Fragment) n=2 Tax=Aroa virus RepID=Q91KY8_9FLAV E=2e-24 s/c=1.19 id=31% cov=97% TYAQCTGS-FKMEKSPADTGHGTVVLDISYQGSeAPCKVPIVITPNLAEIEPVGRLVSAHPVVTgKNVRTMIEVEPPYGDSYIIIgtgdGKLKQHW--- >UniRef50_P27914(298-394:1683) Serine protease/NTPase/helicase NS3 (Fragments) n=3 Tax=Flavivirus RepID=POLG_DEN2T E=5e-17 s/c=0.92 id=32% cov=99% SYSMCTG-KFKIVKEIAETQHGTIVIRVQYEGdGSPCKIPFEIM-DLEKRHVLGRLITVNPIVTEKDSpVNIEAEPPFGDSYIIIgvepGQLKLDWFKK >UniRef50_P05769(593-692:3434) Methyltransferase/RNA-directed RNA polymerase NS5 n=2839 Tax=Flavivirus RepID=POLG_MVEV5 E=2e-33 s/c=1.43 id=39% cov=100% TYGMCTE-KFTFSKNPADTGHGTVVLELQYTGSDgPCKIPISSVASLNDMTPVGRMVTANPYVassTANAKVLVEIEPPFGDSYIVVGrgdkQINHHWHK E >UniRef50_Q9JAD5(562-655:3379) Polyprotein n=215 Tax=root RepID=Q9JAD5_9FLAV E=2e-28 s/c=1.34 id=41% cov=100% TYQMCS-SSFVWHKRPVATQHGTVAMEVKYKGSDaPCRIPVSVEKEGYNGKNFGNLITANPFAANNEAvVFLELEAPLGVSTIKVGGAVFQWKQE >UniRef50_B9TRQ0(593-689:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=3e-25 s/c=1.19 id=37% cov=99% TYPVCPNTV-VLTKEPVDTGHSTVVVEVKLSTfTMACRLAVT-FTDAAGTKITGRLITVNPIITaADEKVTIEMEPPFGESFIEIGvtadSVKHHWNRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 1481 640 * * * 1 0 * * * * * * 2967 0 0 Y 2 * * * * 3755 * * * * * * * * * * * * * * 111 2 0 * * * * * * 2967 0 0 T 3 2370 * * * * 4077 * * 3884 * * * 3593 3459 * 2833 2628 2296 * * 3 0 * * * * * * 2967 0 0 V 4 * * * * * * * * * 3763 960 * * 3061 * * 2873 2680 * * 4 0 * * * * * * 2967 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 134 * 3496 * * * * 2967 0 0 D 6 3909 * 2703 * * 3595 * * * * * * 3461 * * 3359 975 * * * 6 148 * 3359 * * 0 * 2854 0 1000 K 7 * * 3741 3951 * 1164 * * 2000 * * 3436 * 3795 * * * * * * 7 361 * 2175 * * 0 * 2852 0 1000 T 8 1961 * * * * 3141 * * * * * * * * * 1506 1848 * * * 8 1040 * 961 * * 0 * 2835 0 1678 K 9 * * * * * 2902 * * 778 * * * * * * 2858 * 2785 * * 9 226 * 2785 * * 0 * 2635 0 2156 F 10 * * * * 267 * * * * * 3782 * * * * * * * * 3375 10 0 * * * * 0 * 2893 0 1000 T 11 * * * * * * * * 1612 * * * * * * 2118 1897 2524 * * 11 0 * * * * * * 2967 0 0 W 12 * * * * 1232 * * 3723 * 2737 3061 * * * * * * * 2128 * 12 0 * * * * * * 2967 0 0 K 13 2878 * * 2419 * * 3459 * 2860 * * * * * * 2172 3593 2802 * * 13 0 * * * * * * 2967 0 0 R 14 * * * * * * * * 343 * * * * * 2242 * * * * * 14 0 * * * * * * 2967 0 0 A 15 3772 * * 2147 * * * * * * * 2977 * 3755 2705 3061 2624 3952 * * 15 0 * * * * * * 2967 0 0 P 16 * * * * * * * 3723 * * * * 222 * * * * 3896 * * 16 0 * * * * * * 2967 0 0 T 17 1635 * * * * * * * * * * * * * * 2759 2827 1360 * * 17 0 * * * * * * 2967 0 0 D 18 3459 * 530 2208 * * * * * * * * * * * * * * * * 18 0 * * * * * * 2967 0 0 S 19 * * * * * * * * * * * * * * * 2143 370 * * * 19 0 * * * * * * 2967 0 0 G 20 * * * * * 530 * 3763 * * * * * 2097 * * * * * * 20 0 * * * * * * 2967 0 0 H 21 * * * * * * 0 * * * * * * * * * * * * * 21 0 * * * * * * 2967 0 0 D 22 * * 2860 * * 534 * * * * * * * 3496 * 3593 * * * * 22 0 * * * * * * 2967 0 0 T 23 * * * * * * * * * * * * * * * * 0 * * * 23 0 * * * * * * 2967 0 0 V 24 3763 * * * * * * 3723 * * * * * * * * * 233 * * 24 0 * * * * * * 2967 0 0 V 25 3459 * * * * * * 2620 * 3896 * * * * * * 3763 724 * * 25 0 * * * * * * 2967 0 0 M 26 * * * * 4002 * * 3723 * 2482 1123 * * * * * * 2161 * * 26 0 * * * * * * 2967 0 0 E 27 * * 3061 947 * * * * 3496 * * * * 2342 3723 * * * * * 27 0 * * * * * * 2967 0 0 V 28 * * * * * * * 3061 * 2912 * * * * * * * 420 * * 28 0 * * * * * * 2967 0 0 G 29 * * * * * 3772 * * 1332 * * * * 2261 * 2018 3755 * * * 29 0 * * * * * * 2967 0 0 F 30 * * * * 3772 * * * * 3593 * * * * * * 3755 2677 * 705 30 0 * * * * * * 2967 0 0 S 31 2878 * * 2807 * * * * 3459 * * * 3884 3061 * 2031 2337 * * * 31 0 * * * * * * 2967 0 0 G 32 * * * * * 542 * * 2677 * * * * * * * 2672 * * * 32 249 2657 * 0 * * * 2967 1483 0 T 33 3496 * * 3763 * 2802 * * * * * * * * * 1291 1808 * * * 33 89 4061 * 0 * * * 2967 1000 0 R 34 2970 * 1258 4061 * * * * * * 3593 * * * 3772 2739 3496 * * * 34 1158 857 * 0 * * * 2967 2531 0 P 35 3593 * * * * * * * * * * * 125 * * * * * * * 35 0 * * * * * * 2967 0 0 C 36 * 0 * * * * * * * * * * * * * * * * * * 36 0 * * * * * * 2967 0 0 R 37 * * * * * * * * 928 * * * * * 1076 * * * * * 37 0 * * * * * * 2967 0 0 I 38 * * * * * * * 622 * 2672 * * * * * * * 2370 * * 38 111 * 3755 * * * * 2967 0 0 P 39 3367 * * * * * * * * * * * 147 * * * * * * * 39 0 * * * * 0 * 2915 0 1000 V 40 * * * * 2807 * * 1985 * 3755 * * * * * * * 915 * * 40 188 * 3031 * * * * 2967 0 0 R 41 3384 * * 3596 * * * 3739 * * 3600 * * * 2718 2025 3418 2532 * * 41 142 * 3418 * * 0 * 2935 0 1403 A 42 2195 * * * * 3499 * 2161 * * * * * * * 3971 3765 1590 * * 42 0 * * * * 0 * 2893 0 1000 V 43 3884 * * 3459 2672 * * 2751 * * 3723 * * 3896 * * 2905 1947 * * 43 114 * 3723 * * * * 2967 0 0 A 44 2254 * 2005 3656 * * * * 3379 * * * 3937 * * 3625 2188 * * * 44 0 * * * * 0 * 2898 0 1000 H 45 * * 1196 2661 * * 2860 * * * * 4061 4061 * * 2758 * * * * 45 0 * * * * * * 2967 0 0 G 46 2672 * * * * 2128 * * 2948 1929 3496 4061 * * * * 3763 * * * 46 100 * 3896 * * * * 2967 0 0 V 47 2719 * * 3497 * * * * * 3969 * 2808 3888 3439 * 3673 3792 2785 * 3359 47 0 * * * * * 0 2937 0 1000 P 48 2878 * 3965 3971 * 2586 * * 3497 * * 2600 2785 * * 2548 * * * * 48 0 * * * * 0 * 2937 0 1000 E 49 2918 * * 2910 * 2181 * 4061 3755 * 2912 3496 * * 3723 * 3593 * * * 49 0 * * * * * * 2967 0 0 V 50 3763 * * 3031 * * 3723 2751 2524 * * * * * * * 2907 1875 * * 50 0 * * * * * * 2967 0 0 N 51 * * * 4061 * * 4002 2672 * * * 1377 3069 * * 3763 3896 3723 * * 51 89 4061 * 0 * * * 2967 1000 0 V 52 * * * * 3459 * * * 2818 3723 * * * 3896 3496 * 2676 1399 * * 52 0 * * * * * * 2967 0 0 A 53 2860 * * * * 331 * * * * * 3896 * * * * * * * * 53 0 * * * * * * 2967 0 0 M 54 * * * * * * * 3884 * * 2860 3459 * * 702 * * 3496 * * 54 0 * * * * * * 2967 0 0 L 55 * * * * * * * * * 231 4077 * * * * * * 3496 * * 55 0 * * * * * * 2967 0 0 I 56 * * * * * * * 732 * * * * * * * * * 1330 * * 56 0 * * * * * * 2967 0 0 T 57 * * * * * * * * * * * * * * * 3061 184 * * * 57 0 * * * * * * 2967 0 0 P 58 1079 * * * * * * * * * * * 2860 * * * 3496 1735 * * 58 0 * * * * * * 2967 0 0 N 59 * * * * * * 2456 * * * * 290 * * * * * * * * 59 0 * * * * * * 2967 0 0 P 60 * * * * * * * * * * * * 0 * * * * * * * 60 111 3755 * 0 * * * 2967 1000 0 T 61 * * * * 2705 * * 1769 * * * * * * * * 2860 1489 * 4077 61 134 3496 * 0 * * * 2967 1000 0 M 62 2656 * * * 3496 * * 1816 * * 3772 * * * * * * 1338 * * 62 88 4077 * 1585 585 * * 2967 1000 0 E 63 2705 * * 2143 * * * * * * * * * * * 3884 856 * * * 63 597 1562 * 516 1734 * * 2967 1971 0 N 64 1402 * 3896 3723 * * * * 3061 * * 2607 * 4002 * * 2918 * * * 64 0 * * * * * * 2967 0 0 N 65 3496 * 3593 * * * * * 2807 * * 544 * * * * * * * * 65 101 3884 * 0 * * * 2967 1000 0 G 66 4077 * 2802 1721 * 2860 * * * * * * * * * 3763 2620 3061 * * 66 0 * * * * * * 2967 0 0 G 67 3459 * * 2677 * 2239 * * 1534 * * * * * 3061 3723 * * * * 67 384 2097 * 0 * * * 2967 1694 0 G 68 4002 * * * * 2860 * * * * 3763 * * * * * 3061 722 * * 68 0 * * * * * * 2967 0 0 F 69 * * * * 2128 * * 3755 * 2977 1826 2807 * * * * 3593 4002 * * 69 0 * * * * * * 2967 0 0 I 70 * * * * * * * 645 * 3459 * * * * * * * 1892 * * 70 0 * * * * * * 2967 0 0 E 71 * * * 0 * * * * * * * * * * * * * * * * 71 0 * * * * * * 2967 0 0 M 72 3723 * * * * * * 2912 * 3459 1763 * * * * * 3896 1562 * * 72 0 * * * * * * 2967 0 0 Q 73 * * 3763 661 * * * * * * * 3884 * 2860 * * * 3496 * * 73 0 * * * * * * 2967 0 0 L 74 3459 * * * * * * * * 2860 * * 375 * * * * * * * 74 0 * * * * * * 2967 0 0 P 75 * * * * * * * * * * * * 0 * * * * * * * 75 0 * * * * * * 2967 0 0 P 76 * * * * 618 * * * * 3459 * * 2860 * * * * * * 3061 76 0 * * * * * * 2967 0 0 G 77 * * * * * 0 * * * * * * * * * * * * * * 77 0 * * * * * * 2967 0 0 D 78 * * 746 1677 * * * * * * * * * * * * * 3459 * * 78 0 * * * * * * 2967 0 0 N 79 * * * * * * * * * * * 2860 * * * 214 * * * * 79 0 * * * * * * 2967 0 0 I 80 * * * * 2672 * * 2860 * * * * * * * * 3459 3496 * 928 80 0 * * * * * * 2967 0 0 I 81 * * * * * * * 0 * * * * * * * * * * * * 81 0 * * * * * * 2967 0 0 Y 82 * * * 2783 * * * 1570 3459 * * * * * * * 2620 2984 * 2860 82 0 * * * * * * 2967 0 0 V 83 * * * * * * * 1219 * * * * * * * * * 810 * * 83 314 2355 * 2000 415 * * 2967 1471 0 G 84 * * * * * 0 * * * * * * * * * * * * * * 84 769 1276 * 2000 415 * * 2967 2239 0 D 85 3896 * 2860 * * 3459 * * 1967 * * 3496 * 2889 3884 2672 * * * * 85 256 2620 * 2000 415 * * 2967 1471 0 L 86 3459 * * * * * * 1892 * 845 * * * * * * * 3593 * * 86 0 * * * * * * 2967 0 0 N 87 * * * * * * * * 1253 * * 2917 * * * 2977 2120 3459 * * 87 0 * * * * * * 2967 0 0 H 88 * * * 4002 3459 * 1791 * * 3723 * * * 1991 * * * * * 2118 88 0 * * * * * * 2967 0 0 Q 89 2873 3896 3723 * * * 1575 * * * * * * 1377 * * * * * * 89 0 * * * * * * 2967 0 0 W 90 * * * * * * * * * * * * * * * * * * 0 * 90 0 * * * * * * 2967 0 0 F 91 * * * * 1665 * 1025 * 3313 * * 3434 * * * * * * * * 91 0 * * * * * * 2892 0 0 Q 92 * * * * * * * * 1373 * * * * 1508 1931 * * * * * 92 0 * * * * * * 2892 0 0 K 93 * * * 1270 * * * * 773 * * * * * * * * * * * 93 0 * * 0 * * * 2755 0 0 //