HHsearch 1.5 NAME d1z60a1 FAM FILE d1z60a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1z60a1.a3m DATE Mon Mar 8 21:47:55 2010 LENG 59 match states, 59 columns in multiple alignment FILT 38 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.5097 3.0788 SEQ >ss_dssp CCSCCEEEHHHHCSCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC >sa_dssp EEEEEDCCDEEBEDEEDACCDECDADEECACAACEBDCBBADDAEEDBEEEECECBCCE >ss_pred CCCCEECCHHHCCCCCCEEECCCCCCCCCCEECCCCCCCCCCCCCEEEEHHHHCCCCCC >ss_conf 96620000122178762032267477666164746360003544411121231388779 >Consensus LxxfxEVxxxxxxxxxxCfgCxxxlxxxxxyxCxxCxxxFCxdCDxxiHexlhnCPgCl >d1z60a1 LDAFQEIPLEEYNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI >UniRef50_C4WY63(179-237:245) ACYPI003683 protein n=2 Tax=Acyrthosiphon pisum RepID=C4WY63_ACYPI E=4e-06 s/c=0.89 id=43% cov=98% IKPFIKIELEE-GSSAYCYGCRKRIKvpAENVYFCESCKKHYCDGCDIYVHNTLHVCPGC- >UniRef50_B8C051(347-421:422) Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C051_THAPS E=5e-09 s/c=0.83 id=44% cov=81% ------------NCDRCCFGCLKvigckpmdstdgagdEGESILRFQCPECHNAFCPDCDAYLHETLHNCPGCL >UniRef50_C5DQF9(402-470:477) ZYRO0A11176p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DQF9_ZYGRO E=7e-15 s/c=1.18 id=46% cov=100% LKTFSEVPTGQVFPTENCFSCQvrfptvknhktGELLTSSRYRCEDCLKDFCIDCDVFIHEILHNCPGC- >UniRef50_A7S1M7(326-386:400) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S1M7_NEMVE E=8e-13 s/c=1.22 id=37% cov=100% LQQYTEVNVPAQipgQPPWTCQACQITLTEKTACSCPECRHVFCLDCDIYIHESLHTCPGC- >UniRef50_C1DZ00(355-415:427) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1DZ00_9CHLO E=4e-12 s/c=1.19 id=36% cov=93% ----QELNDAAKLDATNCFACNlkfdrsgARGNDDAPSVCPRCKKIYCFQCDVFIHEKLHNCPGC- >UniRef50_Q1JTF0(553-604:647) Ssl1-like protein n=7 Tax=Toxoplasma gondii RepID=Q1JTF0_TOXGO E=1e-10 s/c=1.30 id=32% cov=90% ------VPADAPEAKRLCACCTTQL-DRGGAQCPDCGEIFCHDCDIYSHEQLRQCAFCV >UniRef50_UPI00006CBD72(332-372:372) transcription factor ssl1 family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBD72 E=6e-08 s/c=1.42 id=33% cov=71% -----------------CNGCSEDIKEDYFSKCQNCKSIFCLECDILIHKQKLNCPKC- >UniRef50_C1GGV8(382-477:518) Suppressor of stem-loop protein n=5 Tax=Onygenales RepID=C1GGV8_PARBD E=3e-11 s/c=0.72 id=39% cov=100% LMNWVEVSWrkaarAEAEGRVGCFACgvgfagvpgefvgaegdeereeeedgkgegkgaSRGISVSGRYECLVCRCHFCIDCDVFAHEVVHNCPGC- >UniRef50_B3LBW4(344-397:401) Ssl1-like protein, putative n=7 Tax=Plasmodium RepID=B3LBW4_PLAKH E=2e-10 s/c=1.23 id=42% cov=93% ---FIEIK-NEKNGPSACVSCNKPLYDK-VSQCSKCKNIFCLGCDLYIHEDLNQCPFCL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 3140 * 174 * * * * * * * * * * 1 0 * * * * * * 2825 0 0 D 2 * * 3677 * * 3054 * * 1265 * 2377 * * 3246 * 3515 * * * * 2 0 * * * * * * 2825 0 0 A 3 2778 * 3169 * * * * * * * * 1579 3249 3349 * * 2287 * * * 3 0 * * * * * * 2924 0 0 F 4 * * * * 612 * * * * * * * * * * * * * 2340 2756 4 0 * * * * * * 3196 0 0 Q 5 4739 * 3455 2993 * * * 2798 3716 * * 4278 * 2453 * 3433 3986 2878 * * 5 0 * * * * * * 3285 0 0 E 6 * * * 199 * * * * 3903 * * * * 4007 * * * * * * 6 0 * * * * * * 3285 0 0 I 7 * * * * * * * 1875 * 3052 * * * * * * * 721 * * 7 0 * * * * * * 3441 0 0 P 8 * * 3984 3118 * * * * 4174 * * 2637 1152 * * 2686 * * * * 8 150 4519 4174 0 * * * 3576 1000 0 L 9 3616 * 3962 * 2990 * * * * 2392 * * * * * * 3824 1996 2208 * 9 122 3628 * 1818 481 0 * 3524 1154 1000 E 10 2309 * 3792 2378 * 4828 3953 * 4473 * * 4174 4177 * * 2391 3514 * * * 10 82 * 4174 * * * * 3576 0 0 E 11 1559 * * 1217 * * 3888 * * 4688 * * * 4771 4569 4460 * * * * 11 103 * 3857 * * * 0 3511 0 1000 Y 12 3515 * * * * * * * 2244 2931 4107 4329 3729 4132 4597 3858 3874 3195 * 4561 12 85 4132 * 1585 585 902 1105 3480 1000 1456 N 13 * * * 2486 2979 4159 4655 * 4719 4157 * 1745 3449 4247 * * * * * 4005 13 50 4878 * 2322 322 * 0 3634 1000 1000 G 14 2676 4420 3486 * * 2453 * * 3631 * * * 2469 * 3364 2586 * * * * 14 0 * * * * 0 * 3482 0 1000 E 15 4313 * 4552 3787 * 4076 * * 3961 * * 3764 3408 4379 3626 1576 3666 * * * 15 66 4482 * 3000 193 * * 3521 1000 0 R 16 3785 * 4253 3020 * 3616 * * * * 4117 * * * 1824 4456 2572 3801 4483 * 16 51 4843 * 2322 322 * * 3508 1000 0 F 17 3842 4910 3657 4591 3929 4933 4741 * 4541 3243 * 3936 * * * 4063 2486 * * 2410 17 0 * * * * * * 3387 0 0 C 18 * 0 * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 3469 0 0 Y 19 4223 * * * 1104 * * 5114 4621 * * 4284 * 4860 * * * 3623 * 2029 19 0 * * * * * * 3469 0 0 G 20 1952 4223 * * * 821 * * * * * * * * * 3035 * * * * 20 0 * * * * * * 3469 0 0 C 21 * 0 * * * * * * * * * * * * * * * * * * 21 152 3319 * 4231 79 * * 3404 1611 0 Q 22 4802 * 4419 4991 * 3522 * * * 2806 * 2709 * 1559 4779 3751 4238 * * * 22 278 2917 4537 3531 131 * * 3404 2058 0 G 23 3709 * 4880 3727 * 2700 * 4833 1675 5618 * * * 5166 4213 4221 3504 3880 * * 23 170 3169 * 3161 171 * 0 3344 1822 1000 E 24 * 4739 3598 2206 * 3660 * 4533 2901 4586 * * 4627 4175 2930 3275 4833 * * * 24 0 * * * * 0 * 3344 0 1000 L 25 * * * * 3748 3477 * 2127 * 1285 5246 * * * * 4025 5444 3547 * * 25 154 4379 4238 2322 322 * * 3404 1162 0 K 26 3887 * 4684 3360 * * * * 1986 4045 * 4861 3475 * 4455 2327 3773 * * 4621 26 207 2905 * 2194 356 0 * 3318 2006 1000 D 27 4779 * 1878 3204 * 4991 * * 4262 5188 5444 5337 3572 * * 3273 3089 3068 * * 27 35 5394 * 4087 87 * * 3404 1000 0 Q 28 * * 2813 2923 * 5231 * 5235 2829 * * * 5310 4056 3497 2164 3207 5236 * * 28 167 3753 4839 2434 295 * * 3397 1468 0 H 29 4032 * * * * 2304 5489 5174 5364 4001 4930 3716 3235 * * 2091 4872 4809 * 3644 29 45 * 5024 * * 0 * 3375 0 1000 V 30 3858 4397 * * 3784 2945 * * * 3660 * * 4876 * 1694 * 5433 2085 * * 30 215 2855 * 2160 365 0 * 3475 2061 1000 Y 31 4482 5232 * * 3036 * * 5484 * 5392 * * * * * 2411 * 4495 * 921 31 33 5484 * 1000 1000 * * 3148 1000 0 V 32 3480 * * 2935 4839 * * * 2667 * * * * 2171 2320 4398 3947 4245 * * 32 0 * * * * * * 3148 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 3148 0 0 A 34 3051 * * 2783 * 3166 * * 4713 5449 * 4988 1484 3418 5272 4968 5552 * * * 34 0 * * * * * * 3148 0 0 V 35 5433 * 2489 3431 4877 * * * 1979 * * 4377 * 4034 3449 3168 5517 3566 * * 35 0 * * * * * * 3148 0 0 C 36 * 0 * * * * * * * * * * * * * * * * * * 36 0 * * * * * * 3148 0 0 Q 37 * * * 3461 * 3142 3304 * 1381 4194 * * * 3093 4336 4069 5061 * * * 37 0 * * * * * * 3148 0 0 N 38 * 4568 * 3569 4074 4461 3425 * 3043 5394 * 1836 * 2305 * 4377 * * * * 38 0 * * * * * * 3148 0 0 V 39 5294 * 3024 5828 3776 * 2593 1948 * 4461 * * * * 4194 * * 2539 * 3966 39 0 * * * * * * 3148 0 0 F 40 * * * * 160 * * * * * * * * * * * * * * 3254 40 0 * * * * * * 3148 0 0 C 41 * 0 * * * * * * * * * * * * * * * * * * 41 0 * * * * * * 3148 0 0 V 42 4622 * 3775 * 3429 4988 3264 2414 * 1917 * * 5294 4461 * 5517 * 3149 * * 42 0 * * * * * * 3148 0 0 D 43 4747 * 802 2697 * 3902 4461 * * * * * * 4976 * 4074 * 4988 * * 43 0 * * * * * * 3148 0 0 C 44 * 0 * * * * * * * * * * * * * * * * * * 44 0 * * * * * * 3148 0 0 D 45 * * 0 * * * * * * * * * * * * * * * * * 45 0 * * * * * * 3148 0 0 V 46 2749 4747 * * * * * 1821 4461 3430 * * * * * 4713 4454 1694 * * 46 0 * * * * * * 3148 0 0 F 47 * * * * 1133 * * 5061 * 3173 * * * * * * * 5088 * 1420 47 0 * * * * * * 3148 0 0 V 48 3153 * * * * * * 976 * 2984 * * * * * 4482 * 2266 * * 48 0 * * * * * * 3148 0 0 H 49 * * * * * * 0 * * * * * * * * * * * * * 49 0 * * * * * * 3148 0 0 D 50 * * 2021 771 * * * * 4377 * * 4839 * 4461 * 4682 * * * * 50 0 * * * * * * 3148 0 0 S 51 * * 3692 * * * * 3834 3211 * * * * 3022 * 1544 2923 2769 * * 51 0 * * * * * * 3148 0 0 L 52 * * * * 4682 * * 3322 4377 416 * * * * * * * 3977 * * 52 0 * * * * * * 3148 0 0 H 53 * * * * * * 383 * 4682 4377 * 4968 * * 3713 * * * * 4713 53 0 * * * * * * 3148 0 0 S 54 4877 5510 * 5049 * * * * * * * 897 * 3034 * 3638 3703 3356 * * 54 0 * * * * * * 3148 0 0 C 55 * 0 * * * * * * * * * * * * * * * * * * 55 0 * * * * * * 3148 0 0 P 56 4482 * * * * * * * * * * * 166 * * * * 4877 * 5049 56 0 * * * * * * 3148 0 0 G 57 * * * * 3705 335 4747 * 3418 * * * * * * * * * * * 57 0 * * * * * * 3148 0 0 C 58 * 0 * * * * * * * * * * * * * * * * * * 58 0 * * * * * * 3148 0 0 I 59 * * * * * * * 3006 * 436 * * * * * * * 2877 * * 59 0 * * 0 * * * 2233 0 0 //