HHsearch 1.5 NAME d1yela1 FAM FILE d1yela1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1yela1.a3m DATE Mon Mar 8 18:15:11 2010 LENG 102 match states, 102 columns in multiple alignment FILT 101 out of 493 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.2 EVD 0.4286 -0.0970 SEQ >ss_dssp CCCCCCEEEEEECCHHHHTTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEEEEEECSSSEEEEEEECSS CC >sa_dssp EEEEBDDECDBDBDDEDACECACBCEECAEECEDEEBEDADADBEEEEDBDAEBCCEEEDBCACEBACEABEDCEADECBDACACBCEDEDBCADBDCEE EE >ss_pred CCCCCCCEEEEEECCCCCCEEEECCHHHHHHCCCCCCCEEEEECCCCCEEEEEEEEECCCEEECCCHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC CC >ss_conf 9767881479993556551067718789976078777248999899988999999968919996984898987286747589999817965999997288 99 >Consensus xxxxxxxxFxkvlxxxxxxxxLxIPxxFxxxxxxxxxxxvxLxxxxGxxWxvxxxxxxxxxxlxxGWxxFxxxnxLxxGDxlxFxxxxxxxfxVxifxxs xC >d1yela1 MADTGEVQFMKPFISEKSSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVIIYGHN MC >UniRef50_B9HEF5(17-114:227) Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HEF5_POPTR E=2e-14 s/c=0.82 id=21% cov=95% ----KKTHFIRIILSDiMKNQKIAIPRRFLRKHGESLSKSAVIKVPSAATWKVEFLKHKDEVSFAKGWEMFIAYYSIDYGDFLVFEHEWNSLFTVFIIDK S-- >UniRef50_Q2HTL0(30-123:192) Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=Q2HTL0_MEDTR E=0.0006 s/c=0.48 id=18% cov=89% ---------YRIFVIEFDMEHgvVHLPNMFMHDFGDQINFIATLVDSQHNQFEVYVEKHTSGIYLTRGWRALRDFYKLFLGAWVTMVFVGNGRFEISLED R--- >UniRef50_A3BRX2(291-381:388) Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A3BRX2_ORYSJ E=1e-06 s/c=0.59 id=18% cov=75% --------FVSVIGKNNASGRissLSIANRYVDNYLQD--EKTIRLSRLGDKWNIRLSDSSGNRRMVGGCRKFAEDNDVGVGDICLFE------------ ----- >UniRef50_Q8S8E8(582-680:682) Putative uncharacterized protein At2g24690 n=2 Tax=Arabidopsis thaliana RepID=Q8S8E8_ARATH E=8e-11 s/c=0.69 id=20% cov=91% -SDVKN-RFLTLTLaPEDVKDgNLHLPCQFMRINGINKPGQITLLGRGGMKWFAYLLSGDGTVVVGNGWKGFCEANGVMLGETFVLEFipkdDTNHVFKF -------- >UniRef50_Q67VL7(9-125:393) Putative B3 domain-containing protein Os06g0632500 n=3 Tax=Oryza sativa RepID=Y6325_ORYSJ E=4e-12 s/c=0.62 id=18% cov=94% -------KFAAPLLSPACLHRLSVPGEFAARLDdddaagvgeeeeeesGRRAAAVLVVGPLGKVWRVELRRSpagDGEAWLGGGWSELAAAHGLGEGWGV VLRLERRGVASLRVFDPGFC >UniRef50_B9SR35(215-299:318) Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9SR35_RICCO E=2e-10 s/c=0.79 id=19% cov=82% ---------FKVIVRQYHFRHsnVKMPYRFFTSHIERKAENIMLQVAD-RMWPVKLRERSHTVEINGGWSAFSRSNSLKAGDVCVFELIKSNVLN----- ---- >UniRef50_B9T454(10-93:126) Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T454_RICCO E=4e-05 s/c=0.58 id=22% cov=75% --------FRKILKQSHITHQLNIPEQVLQRYPIynlEYSRNFTCYDKDGNLFPFRISIRRSPVYFkpyfaRAVWGPFVEAKSLRVGDVVEF-------- ---------- >UniRef50_Q8W4L5(295-385:790) B3 domain-containing transcription repressor VAL1 n=2 Tax=rosids RepID=VAL1_ARATH E=0.0002 s/c=0.51 id=22% cov=48% --------FEKTLSASDAGRigRLVLPKACAEAYFPPISQSegipLKIQDVRGREWTFQFRY-------------------------------------- -------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2236 * * 344 * * * * * * * * * 1 0 * * * * * * 2974 0 0 A 2 1013 * * * 3014 * * * 3064 * * * * * * 3035 * * * 2846 2 0 * * * * * * 4029 0 0 D 3 * * 1402 1561 * 3850 * * 3788 * * 3763 * * * 3897 * * * * 3 0 * * * * * * 4807 0 0 T 4 * * 4126 3712 * * * 3731 * 2875 * * * 3794 3810 3969 1684 2875 * * 4 0 * * * * * * 5140 0 0 G 5 * * * * * 2677 4003 * 1018 * * 4307 * 4400 3430 3367 * * * * 5 0 * * * * * * 5352 0 0 E 6 4196 * 3129 2700 * * 4508 * 4537 * * 3442 1811 4476 2971 4617 * * * * 6 146 4588 4193 0 * * * 5656 1000 0 V 7 3825 * * 4540 3552 * 3818 3710 4782 2760 * * 2545 * * 3882 3129 3575 * 4941 7 52 4826 * 0 * 0 * 5681 1000 1000 Q 8 * * * 2856 * * 1810 * 3052 5334 5328 * * 3264 2256 3889 * * * 5290 8 0 * * * * * * 6275 0 0 F 9 * * * * 35 * * * * * * * * * * * * * 5372 * 9 24 5908 * 0 * * * 6921 1000 0 M 10 6239 5201 6413 4649 1309 * * 3727 * 3760 3897 * * 6112 5767 6082 4371 2771 5521 5388 10 36 5351 * 0 * * * 7376 1075 0 K 11 4435 * * 6155 * * * * 853 6081 6188 6262 * 4245 3328 4568 2882 6126 * * 11 36 * 5350 * * * * 7408 0 0 P 12 4964 * 6115 * * 6206 * 2146 4530 3264 * * 3299 5753 * 5524 5000 1416 5720 * 12 41 5964 6359 0 * 0 * 7401 1000 1703 F 13 * * * 6187 3335 * * 2685 6185 1309 3243 * * * 6071 * 3688 3888 * 4357 13 35 6340 6412 0 * 0 * 7406 1000 1000 I 14 5109 * * * * 5464 * 2571 4363 1673 6063 5840 * 4123 4522 3540 3080 3636 * * 14 93 4389 6097 1412 680 0 * 7433 2245 1000 S 15 3834 * * 4601 * 3811 4601 4651 3729 * * * 1540 4386 3313 2946 4685 * * * 15 47 4966 * 0 * 0 * 7419 1729 1000 E 16 5175 * 3393 3219 * 2870 5623 * 3547 6359 * 3381 4713 4590 5915 2405 3049 * * 6260 16 61 5341 5901 495 1783 * * 7440 1661 0 K 17 5257 5119 2422 6251 3175 * 4356 6011 4619 3311 5261 4019 6052 4517 * 2621 5053 * * 3478 17 40 6066 6331 0 * 0 * 7407 1000 1000 S 18 4188 6462 4517 6017 4625 5929 3466 4439 4341 6169 4402 6419 * 5327 4474 2419 3086 3234 * 3679 18 97 4554 5459 1793 491 0 * 7610 2403 1000 S 19 4089 * 4478 4627 5111 4566 * 5851 3473 3058 4598 3856 * 5978 4683 1711 3709 * 6611 * 19 76 5041 5560 1000 1000 0 * 7614 1684 1713 K 20 5929 5401 2408 3063 * 5674 2697 6409 2532 6238 * 6329 * 3731 5480 4120 4864 * * 3679 20 174 3339 6075 840 1181 0 * 7596 4024 1548 S 21 4721 6542 5592 6023 4742 4883 4091 * 3012 4533 * 4488 * 4121 2052 3012 3721 5423 5994 4790 21 187 3244 5974 1190 832 0 * 7529 3865 1000 L 22 6691 * * 5784 5660 * * 3942 6112 769 2367 * * * 6224 * * 3667 * * 22 0 * * * * 0 * 7488 0 1000 E 23 3874 6512 6467 4907 6460 4263 4602 6934 3774 4958 * 4007 5379 6019 2896 3091 3785 3309 6261 3080 23 24 5904 * 0 * * * 7523 1000 0 I 24 6035 * * * 6383 * * 891 * 1956 5441 * * * * * * 2710 * * 24 18 6326 * 0 * * * 7543 1000 0 P 25 5777 5799 * * * * * * * * * * 129 * * 4350 * * * * 25 0 * * * * * * 7543 0 0 L 26 3377 6401 4969 4132 * 5821 * 5566 2764 3670 4795 3891 4173 6716 3030 3559 4219 4077 * 4326 26 0 * * * * * * 7543 0 0 G 27 3365 6623 3569 3767 * 4319 4577 5021 2615 * 5717 5625 5274 3948 2654 4046 4405 4596 6492 * 27 20 6173 * 2322 322 * * 7543 1000 0 F 28 5703 6737 * * 485 * 5868 4931 * 4500 * 6118 * * * 4995 * 4408 6409 4109 28 28 5717 * 707 1369 * * 7543 1693 0 N 29 1881 5195 5672 * 5075 4657 * 3737 * 3028 3821 6464 * 4747 * 3956 4663 2487 * 6253 29 87 4097 * 243 2690 * * 7543 2987 0 E 30 4309 * 3431 2967 * 4769 4966 5257 3011 5515 5366 3608 5437 4068 2325 4038 5151 6560 * * 30 0 * * * * * * 7543 0 0 Y 31 3630 6253 3373 3982 6038 6303 3293 4081 2979 6794 4762 3347 6160 5069 3260 3583 6485 7045 6643 5266 31 0 * * * * * * 7508 0 0 F 32 * 6802 * * 2223 * 2937 4582 * 2893 4878 3054 * 5429 6625 4940 5336 4913 * 2384 32 113 3726 * 1750 509 * * 7508 3539 0 P 33 5522 * 5560 3639 4402 1708 * 3978 4788 2699 5529 4039 3571 6393 4730 5607 4923 * * * 33 57 5109 6713 2937 202 * * 7508 2086 0 A 34 4647 6388 3076 3303 5410 2673 * 3881 3551 3448 6726 3667 3082 5828 4729 5574 * * 6630 6581 34 21 6144 * 1585 585 0 * 7506 1000 1000 P 35 3731 * 4653 2720 5240 4192 6160 5501 3338 4485 4744 3996 3546 4100 3772 4690 3878 4368 * * 35 38 * 5251 * * * * 7508 0 0 F 36 4747 6309 6776 3135 4041 6458 4745 3338 3810 2352 5440 5020 6208 * 3393 5392 4792 4445 5752 3949 36 56 4709 * 2085 388 979 1021 7500 2365 1665 P 37 4249 5708 4226 4067 6526 3354 4707 * 3585 * * 5092 2464 5410 4409 2213 3627 * * 7147 37 32 5499 * 843 1176 0 * 7437 1642 1000 I 38 4242 * 5446 2361 5124 3505 5376 6467 2816 6811 * 5468 5067 3188 2838 4310 3987 6493 * * 38 54 4776 * 1476 643 * * 7476 3018 0 T 39 5838 6701 3816 3051 4579 5085 5698 4463 3126 6909 5050 3503 6301 5453 3940 3684 2778 3875 * 6425 39 6 7891 * 2000 415 * * 7476 1000 0 V 40 2683 * * 6213 3731 * * 2019 6118 3374 4265 6325 * * * * 4405 1872 * 6275 40 30 5602 * 2983 195 * * 7476 1678 0 D 41 4487 6425 5361 4766 5307 * * 2245 2799 3896 5942 5928 * 6502 5917 4697 2289 3414 * 4705 41 0 * * * * * * 7572 0 0 L 42 5236 6197 * * 4037 * 6113 2816 * 749 * * * * 5837 * 5304 3258 * * 42 12 6885 * 1000 1000 * * 7580 1000 0 L 43 * 5224 6174 2616 6422 6660 4877 * 3333 3240 3881 6804 * 3874 2556 6076 4308 2925 * 5413 43 25 5891 * 2697 242 * * 7517 1546 0 D 44 5667 5955 1405 6798 6660 3219 5409 6410 * 5527 5391 3942 5412 6215 5186 3080 4522 3696 * 6503 44 56 5368 6191 0 * * * 7517 1593 0 Y 45 3707 * 5136 3174 5866 4979 5953 5281 4417 3814 * * 2124 5212 3173 2823 4634 6018 * 6465 45 26 * 5809 * * * 0 7497 0 1000 S 46 * 6919 2502 3523 5419 3491 4425 6137 4993 4000 6863 3006 * 5860 4843 2307 5093 6895 5274 6582 46 75 5133 5508 1125 885 0 * 7497 1721 2075 G 47 5548 * 4501 4015 * 435 5828 * 6515 * 4839 * * * 5239 4854 6903 * * * 47 15 6603 * 2000 415 0 * 7506 1000 1678 R 48 5532 6352 4908 3395 5081 6320 6728 6098 2000 5452 5050 3223 * 5659 2021 5665 5440 4841 6839 6803 48 37 5797 7067 0 * * * 7517 1681 0 S 49 6643 5154 * 3465 4481 * * 5429 2956 3821 4998 * 3797 3919 4124 2619 3095 3364 * * 49 48 5599 6333 0 * * 0 7516 1717 1000 W 50 * * * * 4657 * * 5427 * 6338 5743 * * * 5756 5391 * 5818 340 4156 50 0 * * * * 0 * 7494 0 1627 T 51 4927 * 3868 3671 6498 * 5562 6159 3216 4791 * 4374 2730 4046 2562 4176 3093 5795 * 6537 51 20 6191 * 0 * * * 7517 1000 0 V 52 5555 6687 * * 2847 5999 * 3546 * 3656 5149 * * * * 5316 5695 794 * * 52 20 6215 * 1585 585 * * 7517 1000 0 R 53 5944 6685 4288 2692 6726 5370 * * 2776 4737 5575 5049 * 4871 1882 4436 4283 4921 5132 4826 53 61 4604 * 869 1144 * * 7517 2724 0 M 54 5210 3896 * * 3783 6279 * 4465 * 1474 4577 * * * * 6505 5899 2337 5653 2970 54 64 4518 * 511 1744 * * 7517 2882 0 K 55 5646 5078 5005 3485 * 4705 6005 5114 3009 3585 * 6726 * 4005 3523 2132 4043 3812 * 5584 55 39 5232 * 362 2174 * * 7517 2047 0 K 56 5299 6030 5821 3680 * 4047 4563 3564 2526 4808 * 5632 4516 5514 3316 5013 4629 2813 6795 4105 56 80 4210 * 1136 875 * * 7515 2856 0 R 57 4210 7171 3264 4078 6642 4749 3632 5856 3544 5727 * 4613 6802 4191 2530 2790 4325 5779 5991 5650 57 61 4939 6857 1043 958 * * 7512 2645 0 G 58 3649 5101 3387 4127 * 3076 * 6328 3215 5160 5009 3821 3980 5927 3370 3133 4331 6617 * 5682 58 58 6609 5085 0 * * 0 7499 1000 1000 E 59 6840 6232 3167 4235 * 2625 4349 6286 2588 6795 6823 2628 6739 4758 3352 4131 5015 6464 * * 59 153 3579 5860 2217 349 * 0 7484 3597 2636 K 60 * * 3266 4522 4791 2451 4754 6704 2941 * 6455 4323 6123 5053 2876 3419 3431 6553 * 5823 60 44 5050 * 367 2154 2369 310 7477 2384 3190 V 61 4932 6811 * * 4049 4698 5110 3283 6462 2948 3580 5997 5196 6041 3381 6461 3531 2346 * 4197 61 44 5660 6596 1888 455 2100 383 7486 1584 2907 F 62 5556 6775 * 5765 2937 3810 6683 3994 4775 3706 4682 5780 * * 3952 3897 5941 2678 4439 2679 62 113 3885 6993 1032 969 335 2269 7493 3313 2702 L 63 * * * * 1552 6266 * 3091 * 1369 3579 * 6268 * * * * 5121 5957 * 63 53 4782 * 1495 632 0 * 7501 2414 1701 T 64 4569 4509 4677 4944 6801 2882 5791 4551 5174 5856 6017 6804 6949 4030 3544 2361 2462 5818 * 5735 64 12 6876 * 0 * * * 7512 1000 0 V 65 4679 4973 3976 4515 6894 2412 4300 5526 3051 5888 6678 4323 * 4815 3407 3350 3835 5641 * 4727 65 61 5433 5751 0 * * * 7512 1745 0 G 66 * * 5175 * * 183 * * 6816 * * 6803 * 6105 5772 5218 * 6187 * * 66 0 * * * * * 0 7496 0 1101 W 67 * 5808 * * 6717 * * * * 5813 * * * * * * * * 87 6194 67 0 * * * * 0 * 7496 0 1101 E 68 5100 * 5127 3381 * 6216 6638 4522 2128 4562 5630 4305 6787 4097 2816 2753 4546 5235 * 6632 68 0 * * * * * * 7512 0 0 N 69 2770 6256 4088 2618 * 4099 * * 2487 6802 6725 3896 5475 4026 3314 3815 6433 5873 * 6351 69 0 * * * * * * 7512 0 0 F 70 * * * * 226 * * 5007 * 3454 * * * * * * * * * 5469 70 0 * * * * * * 7512 0 0 V 71 2188 2592 * * * * * 4905 6867 3924 * * * * 4573 4267 6625 1398 * 5416 71 0 * * * * * * 7510 0 0 K 72 3529 * 3622 3699 * 6799 * 4765 2244 4568 * 4314 6229 4328 2826 3541 4714 3685 * * 72 0 * * * * * * 7510 0 0 D 73 1954 * 1888 2151 4924 6479 4847 * * 6817 6718 6401 * 5897 6166 4110 5962 5418 * 6723 73 0 * * * * * * 7510 0 0 N 74 6272 6615 * 5974 5001 * 1892 * 3240 6477 * 1207 * 6173 6401 6881 6817 * * 3898 74 0 * * * * * * 7510 0 0 N 75 5739 4079 3013 4510 7037 2331 3170 * 3565 * * 3234 4628 6402 3455 3286 * * * * 75 0 * * * * * * 7510 0 0 L 76 * * * * 6809 * * 2678 6421 639 5428 * * 6180 * * * 2794 * * 76 0 * * * * * * 7510 0 0 E 77 5377 * 4161 3354 5870 3111 * 5497 2323 5032 5339 6736 * 3242 2474 4506 5971 4130 * * 77 19 6268 * 1000 1000 * * 7518 1000 0 D 78 3223 5107 4184 1941 6070 * * 5216 4755 3325 4920 * 4818 5063 6796 6888 4938 2378 6643 5708 78 0 * * * * * * 7518 0 0 G 79 * * 4622 6161 6370 350 6627 * 6590 * * 3748 5971 * 6418 6268 6239 * * * 79 0 * * * * * * 7518 0 0 K 80 5870 * 504 3791 5741 6175 6711 5971 5358 * * 5486 * 5243 * * * 6765 5484 4545 80 0 * * * * * * 7518 0 0 Y 81 4912 4302 * 5699 2649 6795 * 2873 4711 3916 5763 5368 * 4309 5179 3269 4041 2699 5866 5005 81 13 * 6826 * * * * 7522 0 0 L 82 6773 1741 * * 4128 * * 3410 * 1420 * * * * * * * 2586 * * 82 0 * * * * 0 * 7520 0 1000 Q 83 * * * 3944 4522 * 6461 2916 4686 2265 5400 * * 6432 6783 4668 3153 1715 * * 83 0 * * * * * * 7531 0 0 F 84 * * * * 239 * * 6035 * 3390 5265 * * * * * * * * 5956 84 15 6623 * 0 * * * 7531 1000 0 I 85 * * * 1693 * 4811 * 4897 2738 5465 6344 6277 * 4409 2337 4548 3554 5656 6061 5949 85 22 6066 * 2000 415 * * 7646 1000 0 Y 86 * 6222 * 5775 3119 * 2519 * 5016 1486 * * * 6103 4748 * 5691 6107 * 2285 86 71 4385 * 1425 672 * * 7592 2254 0 D 87 6257 6328 2156 2793 * * 6541 2735 4145 4055 * 4810 * * 4187 4564 4150 2846 * * 87 39 5233 * 1554 601 * * 7247 1642 0 R 88 4053 * 4641 3046 * 1249 * * 3315 * 5217 6145 6073 6299 3851 3773 4959 * 6150 * 88 31 5559 * 0 * * * 7247 1000 0 D 89 * 6088 3974 6073 6151 3339 * 6235 3041 * 4911 1885 3634 5861 3412 4261 3862 5425 * 5704 89 0 * * * * * * 7247 0 0 R 90 4658 5220 * * 3977 2876 4957 * 4218 3624 3335 5483 * * 4189 1639 4315 * 5702 * 90 22 6049 * 1000 1000 * * 7247 1000 0 T 91 * 5333 5177 2506 6067 * 5263 5196 4377 4400 * 3954 * 4713 2525 5896 3314 2415 * 5237 91 21 6131 * 2000 415 * * 7079 1000 0 F 92 6073 * * * 775 * * * * 2066 4125 * * * * 5975 5448 * 6106 4285 92 34 5427 * 0 * * * 7289 1000 0 Y 93 * * 3722 3053 6228 * 4171 5462 2585 4182 5625 4324 * 4073 3878 3291 2866 6180 * 4657 93 0 * * * * * * 7254 0 0 V 94 5011 * * * 3125 * * 4637 * 4401 6148 * * * * * * 410 * * 94 0 * * * * * * 7250 0 0 I 95 * 5501 5977 4540 5021 5559 3696 3767 2674 2664 6398 4394 * 2952 4934 4181 3567 * * 4601 95 0 * * * * * * 7199 0 0 I 96 4958 * 5382 * * * * 1293 * 3270 5649 * 5627 * 5977 5244 * 1516 * * 96 0 * * * * * * 7199 0 0 Y 97 * * * 4912 675 * 3923 4541 * 3754 * * * * * 5356 * * * 2911 97 79 4234 * 1135 877 * * 6828 1635 0 G 98 5287 * 1285 3878 * 1847 * * 4893 5538 * 4056 * * 4155 4427 * * * * 98 0 * * * * * * 6526 0 0 H 99 3447 * * 5179 * * 5187 3683 2867 3322 * 4935 3241 4464 2397 5543 3892 * * 3721 99 107 3809 * 0 * * * 6227 1682 0 N 100 * * 3081 * * 4867 4481 * * * * 2424 * * * 1240 2372 * * * 100 0 * * * * * * 6040 0 0 M 101 3192 5248 * 5382 3786 1318 * * * 3245 3172 * * 5176 4647 4195 5156 * * * 101 0 * * * * * * 6012 0 0 C 102 * 0 * * * * * * * * * * * * * * * * * * 102 0 * * 0 * * * 5692 0 0 //