HHsearch 1.5 NAME d1xwdb1 FAM FILE d1xwdb1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1xwdb1.a3m DATE Tue Mar 9 00:30:52 2010 LENG 105 match states, 105 columns in multiple alignment FILT 54 out of 58 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4248 -0.8045 SEQ >ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEEECCCCCCCCSSCCTTSCCCCCEEEEEEEEEEEEEECCBTTBCCEEEEEEEEEEEEEECCCTTTCCCCSCCSCTT CCSCC >sa_dssp CEDCECDBCBCBEDBECCCEBEBCCCDDECEDEECEEEDEEEEEEEEDCBCDECDEDECEBDCDEEDEECEDDBCBBDDCCDBECDEEECEDEEEEEDEE DCDCE >ss_pred CCEEEEEEEEECCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCC CCCCC >ss_conf 9505789999807898854999430446641424132167755453400058749999994768888984389711046425788998430102246677 20039 >Consensus CxxxnxtxxvEKxgCxxcxxixttxCxGxCxTxexxxxxpxxxxxqxvCtyxxxxyxtvxLpxCxxgVdPxxxYpvAxSCxCxxCxtxxTdCxxxxxxxx xcxxx >d1xwdb1 CELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS YCSFG >UniRef50_P01229(29-130:141) Lutropin subunit beta n=146 Tax=Theria RepID=LSHB_HUMAN E=2e-26 s/c=1.18 id=40% cov=90% CHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCG------- ----- >UniRef50_Q58P39(22-122:127) Glycoprotein hormone beta subunit n=1 Tax=Aplysia californica RepID=Q58P39_APLCA E=1e-14 s/c=0.80 id=27% cov=89% CHVRSYQFRVTKPPVisedgqilRCSGIVTVNSCWGRCDSSEIgDYLMPYRISHHPVCTYTGRVPRQVTLSGCEDYPDPTFEVFDAAGCECRLCDSDYTS C------------- >UniRef50_C6SUQ8(50-125:141) Putative glycoprotein hormone-beta5 n=2 Tax=Acyrthosiphon pisum RepID=C6SUQ8_ACYPI E=2e-11 s/c=0.93 id=22% cov=65% -------------------------CWGRCDSNEVSdWRFPFKRSHHPVCIHDGQVLTKFMLKNCEEGVQPgteFYVFPQAMSCKCHTCKSSEAAC---- --------- >UniRef50_C6SUR4(16-106:106) Putative glycoprotein hormone-beta5 (Fragment) n=1 Tax=Trichinella spiralis RepID=C6SUR4_TRISP E=9e-10 s/c=0.71 id=20% cov=79% CQVRQYNFTAVKQDSNGKQCrgmVSTYACYGTCDTSEIgTHEFPYSTWKNVVCTYVKKKRQTAELTNCDDDVEPmtkYYHYLEAENCKC----------- ------------ >UniRef50_C6SUS0(113-194:195) Putative glycoprotein hormone-beta5 n=1 Tax=Ciona intestinalis RepID=C6SUS0_CIOIN E=7e-14 s/c=0.95 id=22% cov=79% ----------RRRGCHNKTYTRIQKCEGYCESYEIPKVNDRIERIHSVCTAQTTRTVRVVNPYCEPGVNPFFYITVPTSCNCRNCDPTRAIC-------- ----- >UniRef50_C6SUS1(143-221:225) Putative glycoprotein hormone-beta5 n=1 Tax=Ciona savignyi RepID=C6SUS1_CIOSA E=2e-10 s/c=0.85 id=20% cov=76% ------------EGCDRPRVVY-RRCHGFCSTSEVAEVNGGFVRNHSVCAPSFTVTRRLPYNNCVDGVRRFFHVTVPVRCACMACDPRTTRC-------- ----- >UniRef50_Q8JG63(25-127:130) Gonadotropin I beta subunit n=1 Tax=Plecoglossus altivelis RepID=Q8JG63_PLEAT E=1e-19 s/c=0.95 id=39% cov=98% CQLANISITLEKTECGsHPVIIETTSCTGMCGTKDWNYISSSGQEPQVTCNFKEWSYGTYYMQDCPFGVDPVLTYPVAKSCACTTCSIASTECDPMHMDM ASC--- >UniRef50_D1LXG4(38-134:134) Thyrostimulin beta subunit-like protein 1 n=1 Tax=Saccoglossus kowalevskii RepID=D1LXG4_SACKO E=1e-15 s/c=0.86 id=23% cov=89% CLVREYNKYiAVKSGC-EPQRITIDACWGRCQTFEvPDLLPPYTAANHTMCQYDVTEWRTVELSDCNPGVNRTFVYLNALSCSCTKCSTKQSDCG----- ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * C 1 * 0 * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 4012 0 0 E 2 2682 5463 * 4155 * * 2114 4589 5092 4613 5205 * * 2466 3246 4743 5177 4497 * * 2 0 * * * * * * 4012 0 0 L 3 * * * * * * * * * 1461 5177 * 1692 * * * * 1738 * * 3 0 * * * * * * 4012 0 0 T 4 4150 * * 5357 * * 5172 2996 3507 * * 5077 * * 1652 5218 2072 3927 * * 4 0 * * * * * * 4052 0 0 N 5 * * 3622 2275 * * * * * * * 888 * 3480 5218 4176 * * * * 5 0 * * * * * * 4052 0 0 I 6 3852 * * 5758 3297 * * 2310 * * 5077 * * 3680 * * 5172 3156 * 1469 6 0 * * * * * * 4052 0 0 T 7 * * * * * * * 5518 * 4526 4378 3570 * 4176 * 2642 769 * * * 7 0 * * * * * * 4052 0 0 I 8 * * * * 2078 * * 1574 4720 2941 3903 * * 4526 * * * 2747 * * 8 0 * * * * * * 4052 0 0 A 9 2613 * * * * 5357 5693 * * 4726 * * 4378 5360 4176 2596 2777 4568 * 1868 9 122 3620 * 0 * * * 4052 1424 0 I 10 1572 * * 5433 * * * 3179 * 3252 * * * * * * * 1234 * * 10 0 * * * * * * 4104 0 0 E 11 * * 5688 459 * * * * 4915 * * * * * 3368 * 4343 3762 * * 11 0 * * * * * * 4316 0 0 K 12 * * * * * * * * 554 * 5357 * * * 2290 3478 * * * * 12 104 * 3851 * * * * 4316 0 0 E 13 * * 3409 1411 * * 4942 * * * * * 2449 3955 2879 3565 5102 * * * 13 0 * * * * * 0 4389 0 1280 E 14 * * 3810 1592 * 942 5316 * * * * * 4290 * * * * * * * 14 0 * * * * 0 * 4389 0 1280 C 15 * 135 * * * * * * * * * * * * * 4621 * 4358 * * 15 119 4358 5026 3000 193 * * 4475 1000 0 R 16 4071 * 3476 5004 4794 2176 3962 * * * * 3971 2346 * 2374 4488 * * * * 16 155 5242 3732 0 * 0 * 4447 1000 1000 F 17 * 4347 * 4179 3751 3457 3263 4337 5900 5459 * 3935 4729 4387 2759 4249 4644 3916 * 3648 17 32 * 5509 * * 0 * 4410 0 1451 C 18 * 1072 * * * 4097 * * 3673 * * * 3367 3922 * 2473 4492 * * * 18 0 * * * * 0 * 4485 0 1000 I 19 4811 * * 4523 * 3518 3667 2319 * 2898 3849 4927 * 3384 4009 * 4701 3039 * * 19 83 * 4165 * * * * 4462 0 0 S 20 2318 3998 * * 5472 * 5700 3801 * 4235 5685 * 6034 * 3349 3855 2547 3350 * 3335 20 60 4628 * 1585 585 0 * 4479 1000 1470 I 21 4832 * * * 4827 * * 1200 * * 5140 * * * * * 4806 1217 * * 21 45 * 5010 * * * * 4586 0 0 N 22 * * * 3768 * * 4296 * * 4107 * 1643 * 5834 4289 3364 1890 * * 4014 22 61 * 4602 * * 0 * 4542 0 1000 T 23 * * * * * * * 3889 * 4944 * * * * * * 605 2045 * * 23 34 * 5436 * * 0 * 4473 0 1000 T 24 * * 2591 * * * * * * 5027 * 4577 4225 4743 3930 3855 1088 5183 * 4714 24 0 * * * * * 0 4576 0 1000 W 25 1831 * * * * 4205 * 1728 3778 * * * * * 4608 2880 * 4403 3921 * 25 0 * * * * 0 * 4665 0 1000 C 26 * 0 * * * * * * * * * * * * * * * * * * 26 0 * * * * * * 4633 0 0 A 27 2633 * * 3031 5171 4021 4628 * 5371 * 4968 * * * * 2871 3776 * 1916 4162 27 0 * * * * * * 4633 0 0 G 28 * * * * * 0 * * * * * * * * * * * * * * 28 0 * * * * * * 4633 0 0 Y 29 * * * * 3788 * 3760 * * 4818 3681 * * 4807 1468 * 5275 * * 1656 29 0 * * * * * * 4633 0 0 C 30 * 0 * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 4633 0 0 Y 31 * * 1982 2781 3748 5439 * 6310 * 4380 4596 * 4435 3775 4118 4054 * 5933 * 2751 31 0 * * * * * * 4662 0 0 T 32 * * * * * * 4782 * * 5732 * * * * * 1746 629 * * * 32 0 * * * * * * 4662 0 0 R 33 * * * 4180 5356 * * * 2946 * 3606 3503 * 4854 2184 3154 5627 * 3169 3036 33 0 * * * * * * 4662 0 0 D 34 5777 * 1492 1017 * * * * * * 5786 * * 3368 * * 5863 * * * 34 233 2747 * 0 * * * 4662 2396 0 L 35 * * 5777 * * * * 2153 4557 3097 * * 1498 * 4275 4489 5278 3343 5439 * 35 98 3927 * 0 * * * 4662 1928 0 V 36 4123 * 4273 5305 * * 5374 4443 * * * 2366 3512 * * 2583 3937 1828 * * 36 225 2792 * 0 * * * 4662 1969 0 Y 37 * 5851 * 4607 6026 4431 5364 3782 5135 2334 4389 * * * * 5018 6005 4640 2792 1850 37 0 * * * * * * 4662 0 0 K 38 * * * 3176 * * 5690 3676 1838 3286 * * * 3379 2630 5191 5374 3847 * 5018 38 61 4596 * 1000 1000 * * 4662 1400 0 D 39 5786 * 4459 4097 2366 4009 4375 4100 * 5211 5196 3492 3116 * * 2218 4576 * * * 39 118 4476 4887 1000 1000 * * 4662 1440 0 P 40 5695 * 5136 * * 3878 4798 * 5474 4920 * 5022 683 * * 4012 5610 4776 * 5639 40 42 * 5113 * * 0 * 4666 0 1509 A 41 4063 * 5708 4571 2305 4656 5967 4911 3899 2740 4774 * * * 5146 5410 * 4885 5590 2133 41 0 * * * * * 0 4654 0 1234 R 42 4237 * 5471 4817 4032 3394 * 3799 2235 5595 * 5939 4820 * 2725 2932 5358 5010 * 4705 42 27 * 5730 * * 0 * 4655 0 1234 P 43 3890 * 4814 3416 4664 5697 5466 5265 3476 5797 * 5185 2484 4235 2827 4031 4001 3962 * * 43 0 * * * * * 0 4639 0 1000 K 44 4352 * * 5434 5716 * 6045 4290 6005 3060 * 5123 2869 * 3090 1851 * 3731 5356 4408 44 23 5976 * 1000 1000 * 0 4639 1000 1000 I 45 4756 * * 5562 3888 * 2663 3546 3380 4280 * 3154 3650 * * 3241 4993 4556 * 3163 45 20 6153 * 1000 1000 0 * 4639 1000 1000 Q 46 * * * 4398 * * 1241 * * * * 5366 * 985 * * * * * * 46 40 5178 * 1585 585 * * 4651 1233 0 K 47 * * 4543 4223 * 5619 4234 * 3608 5815 * 3580 2285 4519 2985 2801 4432 3614 * * 47 0 * * * * * * 4651 0 0 T 48 4355 * * * * 4517 * 3194 * * 3839 * * * * 4448 3389 769 * * 48 0 * * * * * * 4651 0 0 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * * 4651 0 0 T 50 4687 * * * * 5709 * 4423 * * 5351 2864 * 5393 * 3477 927 3411 * * 50 81 * 4188 * * * * 4651 0 0 F 51 4043 * * * 3128 * 2706 * * * * * 3986 * * * * * * 717 51 0 * * * * 0 * 4583 0 1280 K 52 4042 * 2793 * * 2529 5335 * 2679 * * 3338 * 3782 2799 4687 4526 5366 * 5717 52 0 * * * * * * 4651 0 0 E 53 4628 * 2250 1893 4687 3456 * * 4703 * * 5226 * 3800 4889 3982 3437 5393 * * 53 0 * * * * * * 4651 0 0 L 54 * * * * 3988 * * 3886 5366 2617 * * * 5255 2664 6174 2540 2657 3134 4645 54 0 * * * * * * 4651 0 0 V 55 * * * 3104 6077 5831 * 3595 3263 * * 5717 * 4503 1932 3112 4790 2653 * 5137 55 0 * * * * * * 4651 0 0 Y 56 5144 * * * 4033 * 6120 * 5638 3056 * 5552 3890 5379 4531 * 3079 * 5393 1128 56 0 * * * * * * 4651 0 0 E 57 3774 * 5731 1886 * 4008 6143 5552 3603 4295 6148 * * 4305 2389 5717 5255 3240 * * 57 0 * * * * * * 4651 0 0 T 58 * * * * * * * 5560 4425 * * * * 5275 2875 2974 917 3142 * * 58 0 * * * * * * 4651 0 0 V 59 3083 * * 5247 4227 * * 2865 4188 3854 6148 * * * * * 4643 1228 5552 4692 59 0 * * * * * * 4651 0 0 R 60 5709 6038 5552 2988 4335 * 4834 3884 3790 5638 5255 * 4687 3133 2529 5745 3099 4540 * 4539 60 0 * * * * * * 4651 0 0 V 61 * * * * 6077 * * 3103 * 524 4406 4132 * * * * * 5039 * 4687 61 0 * * * * * * 4651 0 0 P 62 * * 5335 3642 * * 5831 * 4013 * * 4687 933 4468 3440 3835 5366 * 5552 * 62 0 * * * * * * 4651 0 0 G 63 * * 2447 * * 1261 4052 * * * * 1924 * * * 5745 * * * 4132 63 0 * * * * * * 4651 0 0 C 64 * 0 * * * * * * * * * * * * * * * * * * 64 25 5838 * 2585 263 * * 4651 1000 0 A 65 2765 * 2747 3110 5071 * 4665 * * 5731 * 5393 1373 4781 * 6038 * 4687 * * 65 0 * * * * * * 4651 0 0 H 66 5884 * 3328 3298 5464 5071 4534 4817 * 4535 * 5613 1303 * 4383 4794 * 3351 * * 66 0 * * * * * * 4651 0 0 H 67 * * 2925 * * 730 2409 * 5694 * * 5884 * * * * * * 6038 5275 67 29 * 5659 * * * * 4651 0 0 A 68 2557 * * 5825 * * * 4424 * * * * 5264 * * 4345 5701 575 * * 68 60 * 4625 * * * 0 4635 0 1000 D 69 6152 * 926 3060 * * * * * 5807 * 2197 * 5191 4624 * 4807 * * * 69 30 5582 * 1585 585 * 0 4583 1000 1280 S 70 * * * * * * * * * * * * 367 * 2830 3569 * * * * 70 170 3167 * 1585 585 * 0 4583 1992 1280 L 71 5555 * * * 2441 * 4223 4089 4537 2932 * * * * * 4269 2084 2898 * 3537 71 61 4598 * 1585 585 1459 652 4583 1238 1280 Y 72 * * * * 1305 * 5587 * * 4578 * * * * * * * 2648 * 1422 72 32 * 5533 * * 0 * 4624 0 1109 T 73 5693 * 5830 3536 5330 * 2923 4379 5608 * * 5943 * 5678 * 3291 1395 3745 * 4088 73 0 * * * * 0 * 4637 0 1000 Y 74 * * * * 2935 * * 3692 * 5552 * * * * * * * 3578 * 542 74 0 * * * * * * 4651 0 0 P 75 5011 * * * 4529 * 5472 5247 * 3898 4063 * 805 * 5335 * 3383 4136 * * 75 0 * * * * * * 4651 0 0 V 76 5560 * 5275 2678 * * * 5071 * * * 3359 * 5255 * * * 636 * * 76 0 * * * * * * 4651 0 0 A 77 178 * * * * * * * * * * * 3109 * * * * * * * 77 0 * * * * * * 4651 0 0 T 78 4479 * * 4460 * * * 4026 3215 1378 5255 * * * 4069 * 2878 2898 * * 78 0 * * * * * * 4651 0 0 Q 79 * * * 5145 * 4479 * * * * * 3130 * 6025 3305 567 5552 * * * 79 0 * * * * * * 4651 0 0 C 80 * 0 * * * * * * * * * * * * * * * * * * 80 0 * * * * * * 4651 0 0 H 81 4024 * 3767 2779 * 5552 2776 * 2896 * * 3798 * 3911 2889 3816 * 4195 * 5731 81 0 * * * * * * 4651 0 0 C 82 * 0 * * * * * * * * * * * * * * * * * * 82 0 * * * * * * 4651 0 0 G 83 3608 * 4283 * * 2363 5215 5566 4235 * 4576 * * 3374 3629 2401 2621 * * * 83 0 * * * * * * 4585 0 0 K 84 3290 * * * * * * * 2603 3148 3817 4212 5772 3318 3546 * 2389 3318 * * 84 0 * * * * * * 4585 0 0 C 85 * 42 * * * * * * * * * * 5117 * * * * * * * 85 0 * * * * * * 4523 0 0 D 86 5000 * 2541 * * * 5360 * 3201 * * 2227 4544 5034 4277 1898 5233 5035 * * 86 0 * * * * * * 4523 0 0 S 87 5360 * * * * 5980 * 4437 * 6447 3134 * 3237 * 4787 2255 1294 * * 5117 87 0 * * * * * * 4523 0 0 D 88 3420 * 1551 3871 5233 4294 4607 * 5268 * * 5921 * 4470 3924 2751 3712 * * * 88 0 * * * * * * 4523 0 0 S 89 * * 3175 4341 * * 5362 4917 * * * 3021 * 5268 4011 2962 1626 * 5730 3318 89 0 * * * * * * 4523 0 0 T 90 3244 * 4421 * * * * 5650 * * * 5232 * * * 2333 730 * * * 90 0 * * * * * * 4523 0 0 D 91 5148 * 1177 2502 5179 * * 4792 * * * 5501 * * 4478 2473 * * * 4567 91 0 * * * * * * 4497 0 0 C 92 * 0 * * * * * * * * * * * * * * * * * * 92 0 * * * * * * 4497 0 0 T 93 3993 * 3615 * * 1736 * 3435 * * * * * * * * 1387 3635 * * 93 26 5825 * 1000 1000 * * 3537 1000 0 V 94 4780 * * * 3224 * 3046 3952 * 4798 * 4396 4426 4545 2664 * 4725 1725 * * 94 0 * * * * * * 3335 0 0 R 95 4589 * 4459 2049 3425 4354 * * 2997 4619 4303 * * 4089 2249 4520 * * * * 95 0 * * * * * * 3270 0 0 G 96 2086 * * * * 2455 3512 * * * * * 4040 * * 1206 * * * * 96 0 * * * * * * 3214 0 0 L 97 * * * 2984 * * 5119 3397 * 1326 2194 * * * * 4255 * 3643 * * 97 0 * * * * * * 3161 0 0 G 98 3062 * 2944 2362 * 2065 * * 4673 * * * * 2704 3011 * * * * * 98 0 * * * * * * 3161 0 0 P 99 * * * * * * * 3939 * 5119 3950 * 778 * * 4166 2303 * * * 99 0 * * * * * * 3161 0 0 S 100 2661 * 2031 * * * * 4030 * * * 2545 3015 * * 2389 4320 * * * 100 0 * * * * * * 3161 0 0 Y 101 * * 4421 * 2148 * 4320 * * 4603 * * * 4030 * 2097 * 4255 * 1790 101 0 * * * * * * 3161 0 0 C 102 * 0 * * * * * * * * * * * * * * * * * * 102 0 * * * * * * 3161 0 0 S 103 * * * * * * * * * * * * * * * 518 1728 * * * 103 0 * * * * * * 2282 0 0 F 104 * * * * 613 * * * * 1531 * * * * * * * * * * 104 0 * * * * * * 1443 0 0 G 105 * * * * * 1595 * * * * * * * * * 580 * * * * 105 0 * * 0 * * * 1107 0 0 //