HHsearch 1.5 NAME d1x4ga1 FAM FILE d1x4ga1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1x4ga1.a3m DATE Tue Mar 9 06:18:56 2010 LENG 96 match states, 96 columns in multiple alignment FILT 120 out of 8017 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.5 EVD 0.4402 0.8299 SEQ >ss_dssp CCCSCCHHHHHHHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSCC >sa_dssp EEEDDECEDADEEBDEECBBACAACAEECBEDECAEECADEDCECDECECCDEECCACADBDEBECAADAACDACEDECEEDEADADBBEEEEEEE >ss_pred CCCCCCHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEECCEEEEEEECCCCCCCC >ss_conf 986068767002478986789988897898989999972025726886530232222100121589999999728949888899996132079888 >Consensus nxxxlxxdxxxxxxxxxxxxlxvxnlxxxxtexxLxxxfxxxgxixxxxxxxxxxxafvxfxxxxxAxxAxxxlxgxxlxgxxixvxxakxxxxxt >d1x4ga1 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT >UniRef50_Q9C5A7(555-663:768) Putative uncharacterized protein At5g08700 n=2 Tax=Arabidopsis thaliana RepID=Q9C5A7_ARATH E=9e-06 s/c=0.47 id=16% cov=100% DARRVNLDQqvgIYSDITESN-VLHVKNLSFKTTDEGLKKHLTgvvKQGKILSVKIIRDWTrrrssgYGFVEFDSVETATSVYRDLpvEGNVLDGHSLIL NFSENKRSET >UniRef50_A7AT74(392-472:702) RNA-binding protein P22H7.02c, putative n=1 Tax=Babesia bovis RepID=A7AT74_BABBO E=9e-09 s/c=0.76 id=15% cov=85% --------EAVTEVQRSDDTIIIKNLSKESCEHELVELFSQYGTLMRLSISPYQVMGIVQYIDPKCASTAFKKMAYRPYKGLPIYVEWA------- >UniRef50_A9UT12(4-88:264) Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UT12_MONBE E=4e-05 s/c=0.58 id=17% cov=81% --------------PSNDNRLFVGGVPRTMTQEQIHNMLaQQLDGVVNVlayrsPTHNNRGFAFVDFANRKLAEIAIERMtaHQILLGSHRVDGSWARP- ---- >UniRef50_A4V6K3(185-249:537) HnRNP L protein n=1 Tax=Dugesia japonica RepID=A4V6K3_DUGJA E=6e-05 s/c=0.75 id=14% cov=69% ----------------------VYNLPFNICVDHLFNLFCLYGNVNKIKFTNQPGTAMVQMGSKAAVETCIQYYNNKTLFGQEMHLM--------- >UniRef50_Q5KCA9(10-89:881) Putative uncharacterized protein n=2 Tax=Filobasidiella neoformans RepID=Q5KCA9_CRYNE E=0.0002 s/c=0.59 id=16% cov=76% --------------------LHIGGLKPEITTIHLKDRFSIFGTVKDVEelqpdaLGNPRPFTFLTLEtTPAQLRRCLNIMSGSHWRGALLRIAEAKPR- --- >UniRef50_D0MYG2(47-125:184) Pre-mRNA-splicing factor SF2-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYG2_PHYIN E=0.0004 s/c=0.58 id=14% cov=69% --------------------VRVTDLPRDVDWRNVKDFLRTGGEVTYCNIEADGS-AIAEFQTKEDMEDAVKKLDDTEFRGSYVRV---------- >UniRef50_Q6CS06(349-442:443) KLLA0D05016p n=2 Tax=Kluyveromyces lactis RepID=Q6CS06_KLULA E=1e-05 s/c=0.54 id=17% cov=93% --KPLDIDPLAITTGGDrNSVIFCENMPSSTTESDLYDLFGSVAPVIITKlllnpEGHFTRNSYCQFETPEDADICISKLDKYSYGDHELKVTYAR---- -- >UniRef50_Q08925(190-276:612) Uncharacterized RNA-binding protein YPL184C n=12 Tax=Saccharomycetaceae RepID=YP184_YEAST E=0.0002 s/c=0.54 id=17% cov=84% ----------LNFTSAPSRTVYLGNVPPNLSVKELLDHVRsgvvEDVKIIPEKMCAFVSFIDESAALLFHSDAILKRLN---IGDRDIKIGWGKPTR--- >UniRef50_B8LC97(13-101:119) RNA binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8LC97_THAPS E=0.0002 s/c=0.53 id=18% cov=83% --------------DPN--KVFIGNLPFDATEEDVNQLFATHWgriesvkivrDWKSGKSKGYGFIQFYEPMVATSAMKSVNEGKGLRIKGRPIRLDQGA RKEDG- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 2736 * * * * * * * * 235 * * * * * * * * 1 0 * * * * * * 5253 0 0 T 2 3175 * * * * 4145 * 3225 3203 * * 4184 * 4124 2104 * 2214 4141 * * 2 0 * * * * * * 5921 0 0 K 3 5062 * 4728 3360 * 4850 * 3265 1826 * * 4868 * 2759 2360 * * * * 4740 3 0 * * * * * * 6798 0 0 Q 4 5227 * * 3263 * * * * 1658 * * * 2372 2146 3689 5250 * 5097 * * 4 0 * * * * * * 7351 0 0 L 5 5611 * * * * 5043 * 3384 * 1099 4411 3761 * * 4365 4400 5289 3052 * 5391 5 0 * * * * * * 7484 0 0 R 6 * * 2834 4194 * 5596 5187 * 3904 * * 1749 * 5497 4212 3202 2422 * * 5554 6 32 5512 * 0 * * * 7674 1000 0 F 7 3795 * * 5560 2338 5678 * 4478 * 3999 * 3985 5191 5554 3374 5345 5494 3555 4520 2334 7 28 5682 * 1000 1000 * * 7733 1000 0 E 8 4311 * 1328 2112 * * 5844 * 5516 5515 * 3482 * 4074 * 4709 5939 4755 * 5768 8 52 4807 * 1894 452 * * 7928 1739 0 D 9 3453 * 3569 2181 5904 4833 6187 5603 4917 * * 2960 4577 2667 5850 3973 5708 4137 * * 9 55 5971 5562 1585 585 * * 8050 1000 0 V 10 4299 5747 * 4915 5806 5824 4546 2772 * 3377 3300 * * 5982 4969 5888 3214 1812 * 5804 10 85 5813 4665 1000 1000 0 * 8186 1000 1000 V 11 4549 5940 5614 6059 3433 4569 4441 4575 6024 2891 * 5780 4148 * 6120 4234 5147 2652 6174 2400 11 83 5055 5281 1381 699 567 1621 8380 1697 2341 N 12 4060 * 3634 3943 * 4405 6139 4667 5426 6425 * 3118 4556 3108 2442 3162 4481 4968 * 6298 12 14 6645 * 0 * 1460 652 8497 1000 2292 Q 13 4692 * 3088 1850 5229 * 5172 * 4034 6221 * 6171 5276 2217 6381 3194 5236 5490 6304 * 13 39 5240 * 2101 383 * 0 8508 1719 1685 S 14 4260 * 6352 3670 * 4199 6192 4984 3430 6200 6685 3376 4775 3690 6420 2554 2580 4119 5377 * 14 19 6277 * 0 * 1036 965 8493 1000 1685 S 15 5282 * 2820 4254 6539 4116 5251 * 4107 * 5358 3842 2614 3317 6080 2800 3564 5217 * * 15 25 * 5837 * * 0 * 8558 0 1000 P 16 4678 * 4954 3200 * 5109 * 6790 4163 5412 * 4282 1511 3489 6536 3954 4000 4570 * 5002 16 47 5486 6712 1956 430 1049 952 8608 1722 1724 K 17 4650 * 2634 3875 6864 5766 6285 6723 3143 * * 3801 3133 4129 3459 2546 4267 * * 6447 17 135 3682 6458 1077 927 967 1034 8622 3930 1716 N 18 6628 5701 3254 4697 * 4555 * 6506 3384 6068 * 1817 5007 3239 5471 2699 4472 6651 * 6533 18 91 5048 5013 2854 215 * 0 8643 2351 1724 C 19 3855 3906 5561 * 5690 6540 4670 4962 4984 5346 * 3245 5049 * 2547 3036 2295 5631 * 4937 19 70 5159 5687 407 2023 719 1349 8656 2296 3212 T 20 4204 6422 * 5094 * * * 4720 3174 6800 4720 4548 * 6378 3316 2749 1733 3260 * * 20 42 5759 6600 4087 88 0 * 8716 1849 2845 V 21 5703 6633 * * 6578 * * 1923 6142 1196 * * * * * * * 2023 * * 21 13 * 6851 * * 0 * 8755 0 1000 Y 22 5187 4829 * * 1416 * 4035 4567 6729 4949 5846 * * * 6727 * 6914 5260 3908 1787 22 13 * 6747 * * 0 * 8761 0 1000 C 23 4820 5450 * * 5359 * * 1873 * 2735 6486 6393 * * * 6300 * 1125 * * 23 0 * * * * 0 * 8755 0 1000 G 24 3963 6867 6599 4993 5647 1666 * * 2888 6834 * 6945 * 4669 3404 2553 4096 * 5208 6815 24 0 * * * * * * 8764 0 0 G 25 * * 3887 6651 * 2000 5369 * 5693 6863 * 874 5796 6988 5233 5483 * * * * 25 0 * * * * * * 8762 0 0 I 26 * 5916 * * 5210 * * 1938 * 957 4537 * * 6406 * * * 3303 * 5376 26 23 5958 * 0 * * * 8762 1749 0 A 27 3605 * 2991 6206 * 4920 3912 6406 5329 5597 * 3710 1311 * 5946 3186 7103 * * 6829 27 43 5086 * 0 * * * 8762 2769 0 S 28 3990 * 3759 4493 3074 5759 5011 5982 4260 4821 5115 3906 2618 4624 4131 3806 4703 6903 6958 3947 28 12 6931 * 0 * * * 8762 1000 0 G 29 3663 * 2934 3112 5451 3349 7056 * 5159 6958 6921 2706 6845 4424 3995 2901 3929 6899 6634 6310 29 24 5951 * 0 * * * 8762 1719 0 L 30 4122 3733 * 7020 5234 * * 2723 * 3583 3915 * * * * 4002 2768 1810 5604 5881 30 25 5881 * 1762 504 * * 8762 1607 0 T 31 6529 * 3180 3836 6884 6809 * * 4229 * * 3657 4176 5664 4419 2658 1466 5918 * * 31 0 * * * * * * 8762 0 0 D 32 3633 * 2685 1475 * * * 4663 4303 5668 * 5716 5414 3849 4920 4470 5198 4628 5375 6310 32 0 * * * * * * 8762 0 0 Q 33 4197 * 2691 1813 5899 6001 5340 6964 4245 5370 6032 4287 5751 3407 4688 3636 6746 4958 7136 5890 33 0 * * * * * * 8760 0 0 L 34 3537 * 1980 2315 6781 5939 5364 4337 4438 4907 5280 4285 6217 4223 5023 5936 3800 * * 5813 34 13 6798 * 0 * * * 8760 1000 0 M 35 * * * * 4551 * * 1872 * 899 6027 * * * * * 6767 3018 * * 35 0 * * * * * * 8760 0 0 R 36 4642 5554 * 3996 4481 6780 5661 5207 1767 4079 4775 5344 * 4766 2853 4892 4370 4714 6960 4111 36 11 6981 * 2807 222 * * 8760 1000 0 Q 37 3986 * 2584 2285 6213 5174 6756 7194 3337 5521 * 3107 5969 4278 3662 3995 4519 6718 * 6871 37 57 4696 * 2016 410 * * 8760 2898 0 T 38 3842 5049 * 5580 2762 * 3930 2863 * 1685 5173 * 7138 6981 * * 4239 3639 6997 4882 38 0 * * * * * * 8760 0 0 F 39 5323 5182 * * 776 5949 * 5341 * 2703 4790 * * * * * 6077 3542 6500 5549 39 86 4529 6129 2088 387 * * 8760 2991 0 S 40 3972 6884 6828 3243 * 3279 * * 3279 5407 6065 4547 6786 3334 3133 2047 5138 5238 * 7149 40 43 5102 * 2044 401 0 * 8704 2352 1000 P 41 4568 7342 4141 3396 * 4707 5513 6722 2511 * * 4185 3590 2730 3188 3067 5233 * * 6564 41 22 6059 * 646 1470 * * 8760 1766 0 F 42 3733 4110 5600 * 1608 5039 4306 3616 * 4530 6718 * * 6891 7141 5280 5286 5060 * 2279 42 25 6838 6924 2322 322 * * 8760 1000 0 G 43 4202 6074 5480 5763 5972 649 * 6213 6031 6223 * 4934 4382 6642 5668 5582 6594 4254 * * 43 53 5157 6983 1078 926 0 * 8751 2324 1000 Q 44 6628 * 3799 2521 5810 3757 6013 5312 3096 5061 5742 4762 3223 4620 3353 4251 3607 5571 * 7031 44 37 5310 * 3443 139 * 0 8760 2442 1000 I 45 6848 5420 * * 4387 * 6204 1514 6651 2978 * 6831 * * 7149 6883 5947 1466 5873 * 45 49 5741 6094 1057 945 * 0 8760 1712 1000 M 46 3866 6642 4705 3015 6826 5203 5061 4246 2692 3840 5810 4801 6595 3787 4291 4128 4720 3238 * 5187 46 34 6099 6860 2211 351 1618 569 8760 1765 2384 E 47 3440 6536 3482 4585 5794 4500 4791 4182 3770 * 7275 3827 6322 4706 3277 2625 5780 4009 5785 4387 47 50 4869 * 2574 265 563 1630 8765 2681 2420 I 48 4018 3757 5898 5136 3346 * 5341 2481 5242 3120 5167 5029 6827 6821 5603 5987 4227 2376 6887 6890 48 0 * * * * 0 * 8765 0 1000 R 49 5501 * 4158 6704 5242 5000 4274 5094 2054 4010 * 5387 5366 4593 2666 4137 3832 4115 * 4686 49 26 5786 * 1799 489 * * 8762 1703 0 V 50 6112 * 4929 6048 3313 6619 5886 2231 5901 2555 3963 4828 6714 6863 5155 6969 5008 2427 5918 5442 50 100 3902 * 2188 358 * * 8762 4338 0 F 51 5896 5112 5927 4951 5281 3451 5314 3117 4229 3433 4426 4199 3100 5261 4367 3751 4856 3610 * 5694 51 98 3936 * 2279 333 * * 8762 4525 0 P 52 4570 * 5630 5397 5470 4386 4315 5915 2384 6032 5835 4361 3113 4199 2409 4455 4282 5339 6912 6010 52 22 6029 * 2000 415 * * 8762 1738 0 E 53 4456 * 2464 4222 4752 3867 4375 4889 3431 5449 6714 3467 3657 4615 4449 3126 5147 6995 * * 53 67 4466 * 2920 204 * * 8762 3641 0 K 54 4137 * 4835 4968 4859 4965 5185 5748 2111 5150 5826 3781 4381 4365 2551 4218 5239 5184 6896 5041 54 98 3935 * 2321 322 * * 8762 4046 0 G 55 5058 6162 4756 5446 5111 2311 4203 4506 3311 6812 5866 3970 4043 4655 4209 3587 3483 4823 6796 7548 55 197 3065 6942 2489 283 * * 8762 5433 0 Y 56 6698 3170 6673 * 2168 5212 5236 3740 5164 5560 5021 4820 6935 4268 5439 5904 3571 4360 5927 2697 56 62 5310 5897 2351 315 0 * 8764 2271 1000 S 57 1216 3145 6908 * 5385 2157 6046 6359 5708 5095 5772 6773 * 6583 5670 5203 * 4975 7000 * 57 9 7295 * 2000 415 978 1022 8759 1000 1778 F 58 5841 6639 6362 5796 1103 5917 5146 4132 * 3452 5894 * * 5893 5219 6774 5968 4274 5845 2957 58 40 5196 * 2921 204 0 * 8760 2358 1000 V 59 4417 5767 * 6366 5889 6945 * 2639 * 2645 6136 * 6743 * * 5746 6227 1058 * 4592 59 25 5836 * 3125 176 * * 8762 1744 0 R 60 5129 5953 3507 2629 6227 * 4363 5188 3403 5375 * 5402 * 3225 3340 3610 3386 3770 6889 6799 60 13 6794 * 3807 107 * * 8762 1000 0 F 61 6366 5900 * 5924 1094 5160 * 4750 * 4800 3978 6919 * * * * 6916 5480 * 1823 61 0 * * * * * * 8762 0 0 S 62 2825 6935 3457 2458 4927 6912 6099 5232 3364 5775 5386 5510 6809 4495 4490 3512 3691 5051 * 4606 62 14 6704 * 0 * * * 8762 1000 0 T 63 5160 * 2280 4146 6888 6942 6130 * 5188 4933 * 2590 6227 5112 4414 2639 2623 5808 5924 7352 63 0 * * * * * * 8762 0 0 H 64 4342 5510 5286 3557 5806 5701 3412 4271 4342 3839 * 5924 3072 4558 3068 4167 4378 3366 * 5767 64 25 * 5878 * * * * 8762 0 0 E 65 4120 * 2820 2042 5623 6015 7098 5479 3651 6912 6666 4894 5316 4206 3795 2950 4252 5727 * 6768 65 0 * * * * 982 1018 8756 0 1738 S 66 2574 5668 2258 2947 6752 5450 4804 5761 6851 5923 5244 5166 * 4411 * 2482 5387 4591 * 5916 66 27 5775 * 2585 263 0 * 8761 1720 1000 A 67 610 5117 * * 5916 5557 * 5445 * 5538 5797 * * * 6663 4488 4444 3457 * 5356 67 19 6227 * 0 * * * 8762 1000 0 A 68 3318 5924 3628 2961 4741 7967 5725 4932 3848 4190 5410 4085 5299 3304 3536 4411 3742 4658 * * 68 30 5627 * 1749 510 * * 8762 1816 0 H 69 3308 6619 4415 3330 5865 5776 5304 5389 2779 4095 4672 3305 * 4642 2941 4196 4706 5418 * 5223 69 10 7157 * 2000 415 * * 8762 1000 0 A 70 483 4668 * * 5283 7006 * 4239 5924 5918 6765 * * * * 6921 6942 3317 * * 70 10 * 7247 * * * * 8762 0 0 I 71 4535 5903 * * 3658 * * 2055 4044 2258 3344 * * 6933 4358 * 5842 2634 * 5905 71 12 * 6944 * * 0 * 8767 0 1000 V 72 3474 6636 3668 2627 * 7045 5446 6832 2844 4477 6303 2923 * 3902 3623 3824 4801 5354 * 6332 72 46 * 4980 * * * 0 8762 0 1000 S 73 2736 6598 4167 3687 * 4410 3631 4948 2834 5086 5392 5087 * 4249 4797 3676 3143 5938 5803 6819 73 24 * 5912 * * 747 1307 8756 0 3293 V 74 5837 6089 * 6866 3241 7119 6621 5618 5000 1155 2701 * 6900 * 5379 5774 5279 4110 * 4397 74 63 4862 6900 1405 684 0 * 8744 2440 2864 N 75 5397 * 2899 5169 6561 7020 2559 6908 5756 * 6309 1582 * 3745 5021 3884 4216 6714 * 5923 75 40 6834 5752 1000 1000 * 0 8763 1000 1000 G 76 5373 * 3908 4794 * 1090 6182 * 4578 6697 * 2222 4773 6580 5290 * 6763 7003 * 4868 76 61 4865 7107 2453 291 1635 561 8725 2808 2372 T 77 3437 * * 5211 4157 5474 4236 5123 2740 3491 4583 6869 6696 4305 3688 3817 3473 3885 * 3946 77 27 6734 6816 1000 1000 1494 633 8723 1000 2422 T 78 6044 * 4193 2950 5344 * 5459 3638 3339 3864 4398 5412 4291 3774 4089 3923 4054 3403 * 5012 78 18 6367 * 1585 585 539 1681 8707 1000 2346 I 79 * 5543 * * 2645 * * 2099 * 1633 4576 * * 6398 * 6872 * 2655 6692 4957 79 34 5901 7274 0 * 0 * 8768 1712 1000 E 80 4923 4913 2995 3656 4401 2609 3954 6830 3478 4567 3731 3466 5506 4753 4079 5802 * * * 6563 80 36 5325 * 911 1095 0 * 8775 2370 1000 G 81 6966 * 3408 5456 * 753 6137 * 5124 6813 * 2870 * 5651 5278 5053 5863 * * * 81 78 4254 * 771 1272 * * 8770 3281 0 H 82 5337 5208 7023 5073 7439 5796 3921 5695 2531 * * 4040 * 3842 1479 4073 4933 6088 6519 5533 82 25 5836 * 0 * * * 8776 1666 0 V 83 5332 6625 5097 4200 6840 6779 5757 4279 3587 4589 5822 4906 2016 4177 3029 4929 3345 4021 * * 83 12 6961 * 0 * * * 8776 1000 0 V 84 6541 4715 * * 5508 * * 1451 * 1572 4263 * * * * * * 2515 * * 84 9 7300 * 1585 585 * * 8776 1000 0 K 85 5952 * 5164 5053 4347 6638 4890 6679 2107 4948 6765 4297 * 4292 1956 4462 4180 4594 * 4388 85 28 7121 6408 1000 1000 * * 8592 1000 0 C 86 4320 3920 * * 6537 * * 2136 * 2150 * * * * * * 5738 1317 * * 86 38 5249 * 1749 509 * 0 8518 2380 1000 Y 87 4201 * 3617 2683 5412 3898 5572 * 4645 * 5041 3260 * 4138 3410 2205 5600 6385 * 5523 87 31 * 5579 * * 0 * 8443 0 1000 W 88 5373 * * 4516 2922 * 6543 5098 6402 4188 5499 * 4467 6521 4481 6327 6672 5377 1567 2420 88 19 6235 * 1585 585 939 1063 8381 1000 1735 G 89 1284 * 4860 * 4695 2513 6661 * 4915 * * * * 6262 4458 2511 5656 5470 * 5523 89 36 5359 * 547 1664 0 * 8354 1672 1000 K 90 6266 * * 3311 * * * * 1311 * * 4607 6541 3649 1817 5951 4276 * * * 90 57 5465 5987 1000 1000 * * 8214 1000 0 E 91 4551 6218 3434 2677 * 5688 4825 * 4645 5976 * 4488 2167 3924 2993 4122 4765 5961 * 6019 91 0 * * * * 0 * 8024 0 1000 S 92 5672 * 3810 5818 * * * * 2561 * * 2773 6248 4952 2155 2548 3102 5780 * * 92 23 * 5952 * * * * 7894 0 0 P 93 4576 * * 4169 * 3001 4043 * 4059 4702 * * 1479 5065 2775 5159 4167 * * * 93 0 * * * * 0 * 7640 0 1000 D 94 * * 1781 4266 * 5269 * * * 5143 * 2784 1985 * 5074 3344 4265 5341 * * 94 0 * * * * * * 7273 0 0 M 95 2421 * * 3418 4714 3976 * * 4690 3098 2729 * * * 3220 * 4972 2937 * 4573 95 0 * * * * * * 6738 0 0 T 96 * * * * * * * * * * * * * * * 3169 170 * * * 96 0 * * 0 * * * 6023 0 0 //