HHsearch 1.5 NAME d1x4aa1 FAM FILE d1x4aa1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1x4aa1.a3m DATE Tue Mar 9 15:28:26 2010 LENG 95 match states, 95 columns in multiple alignment FILT 110 out of 10365 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.6 EVD 0.4309 0.4146 SEQ >ss_dssp CCCCCSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCCC >sa_dssp EEEDDEEEEEDEDECCACABDBBEEBEDEDACDBAEEDDDCEEBDCCDEEDEDBBACACBEDDEDADDABEDBDEDECEEDEAEADDCEEEEEEE >ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECCCCCCCC >ss_conf 98776678998998779986898868999999851267756899961433203577776369999999999838959888799998413788898 >Consensus sgxxxxxxxxxxxxxxixVxnlpxxxtxxxlxxxfxxxgxvxxxxxxxxxxxxxxxfvxfxxxxxaxxAixxlxgxxixgrxixVxxaxxxxxxg >d1x4aa1 SGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG >UniRef50_Q9LJL7(97-186:489) DNA/RNA binding protein-like n=14 Tax=Magnoliophyta RepID=Q9LJL7_ARATH E=7e-06 s/c=0.57 id=18% cov=89% ----AIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKltsQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDqpFRINWA------- >UniRef50_A4HCU3(122-209:600) RNA-binding protein, putative n=3 Tax=Leishmania RepID=A4HCU3_LEIBR E=4e-08 s/c=0.67 id=16% cov=89% ----ESAKPKNQNVRRnVYISGVPPTYRSEDFRQLCQQFGRVeaaKLCVDNRNAPTKAYGFALYYSEESAASCIRGLNGSFLQGRCVQARLA------- >UniRef50_Q8I2U4(111-200:480) RNA binding protein, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8I2U4_PLAF7 E=0.0001 s/c=0.53 id=18% cov=72% -------------ENKLYVKNINEHITKENFESYFSKIDGYIETRFVVDTSRTSrkFAYIDFENKTKALAFLHTLQNSNIEN--------------- >UniRef50_Q584Y8(93-172:347) RNA-binding protein, putative n=2 Tax=Trypanosoma brucei RepID=Q584Y8_9TRYP E=8e-07 s/c=0.69 id=18% cov=77% ----------------VYIRNIPTTMGEREVQNFLSNLAPLEYCAMRGDHHGNPVWVVyaEFDTPQNAQRVLDKLHGnsNHFGGPPIMVKYA------- >UniRef50_D2W041(408-497:778) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2W041_NAEGR E=1e-08 s/c=0.67 id=14% cov=96% --GKSQKHPGEYPSRTLFVRNISSVVDDQELRILFESFGPIRQ--MYTSCKHRGFVMITYYDIRHAKQAKKNLQSKLIKKRKIDIHYSIPKENP- >UniRef50_C5WZC1(502-598:664) Putative uncharacterized protein Sb01g019710 n=1 Tax=Sorghum bicolor RepID=C5WZC1_SORBI E=0.0001 s/c=0.49 id=15% cov=96% ---GSFRKSAQRSGNTVFIKGFDTSVGEDQIRSALEEHFrscgditRISIPKDYDTGASKGMAYMDFKDPDSLNKAYE-MNGTYLGDYSLYVDEAKPRPD N- >UniRef50_Q4UFE0(407-499:560) Nucleolar, RNA-binding protein, putative n=2 Tax=Theileria RepID=Q4UFE0_THEAN E=5e-05 s/c=0.52 id=17% cov=94% SGPSGSRSAPTEATNEICIRNLNFNSSEEGLRELFSECGQVTRCYVPKFQDtgKPMGIGFISFTTVEAAKRAVEYDNTDIDGRTVSIQFA------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3170 * * * * * * * * * * 3278 * * * 410 4912 * * * 1 0 * * * * * * 5988 0 0 G 2 4757 * 4633 * * 463 * * * * * 3660 4627 * * 5006 4428 * * * 2 0 * * * * * * 6789 0 0 G 3 3173 * 4264 5105 * 1013 * * 4660 4782 * * 4826 3884 * 2906 * * * * 3 0 * * * * * * 6923 0 0 G 4 5228 * 3774 * 5781 1090 4988 * 3578 * * 4905 * 4177 4254 2681 * * * * 4 0 * * * * * * 7282 0 0 V 5 1548 5119 5089 2389 4871 3536 * 5089 * * * 5354 5268 5171 * 5269 3396 4059 * * 5 0 * * * * * * 7385 0 0 I 6 2864 * * * 2702 3569 * 3842 3400 4443 5208 * * * 3075 3812 4383 2990 * 5414 6 32 * 5511 * * * * 7552 0 0 R 7 3663 * 5428 5513 * 3968 * * 2842 * 5421 5797 5397 4636 1174 4682 3908 5745 * * 7 0 * * * * * 0 7603 0 1000 G 8 3122 * 4011 5529 * 1814 5915 * 3532 * 5751 4742 4721 4163 2592 4014 5781 * * 5766 8 29 5642 * 1000 1000 * 0 7742 1000 1000 P 9 3004 * 3051 4687 * 4872 * * 4272 * 5570 5962 1226 5883 5717 2950 * * * * 9 50 4872 * 1861 465 0 * 8110 1761 1000 A 10 2949 * 2308 4599 * 3985 5867 * 4333 6103 * * 2658 4197 5830 2391 5778 5201 * 5954 10 50 5987 5755 2322 322 * * 8300 1000 0 G 11 5244 * 4422 3236 * 1823 6576 6208 3534 * * 3110 4829 4467 3830 4048 3566 5936 * * 11 45 5030 * 582 1590 * 0 8434 1723 1000 N 12 4063 * 2494 3254 * 5072 6314 6203 3145 4231 * 3703 4422 3695 3139 5061 4700 4577 * 6493 12 52 4822 * 1243 792 * 0 8580 2246 1000 N 13 5377 6303 2381 3960 6821 * 4088 6267 4986 4934 * 2557 2417 4831 3696 4309 4927 * * 6747 13 110 3976 6676 1673 543 0 * 8717 3312 1000 D 14 5003 * 3264 3147 * 4036 6676 * 5732 6277 5341 2656 2542 4785 4393 2843 4425 6808 * 6002 14 19 6224 * 1000 1000 0 * 8771 1000 1000 C 15 4201 2522 6097 * * 4171 5116 6609 4355 5638 * 3509 * * 2361 3705 2520 6534 6389 4750 15 46 6593 5591 1000 1000 * * 8821 1000 0 R 16 4243 3953 6660 4096 6470 * * 6111 3569 * * 4876 * * 2512 4034 1442 4144 * 6757 16 61 4585 * 833 1189 0 * 8802 2831 1828 I 17 5140 6360 * * * * * 1717 * 1500 5571 * * * * * * 1834 * * 17 0 * * * * * * 8923 0 0 Y 18 6225 5186 * * 1754 * 4072 3457 6180 4338 6530 * * 6702 4785 * * 3571 4390 1941 18 0 * * * * * * 8923 0 0 V 19 5485 6133 * * 5369 * * 1652 * 3651 4208 * * * * * * 1037 * * 19 11 7036 * 0 * * * 8923 1000 0 G 20 4220 * 5851 6486 6225 1941 5486 * 2771 6595 6453 4584 * 4898 3163 2396 3883 6828 * * 20 14 6705 * 1000 1000 * * 8923 1000 0 N 21 * * 5607 * 6503 2113 3852 * 5761 6226 * 875 * 6588 4744 5872 * 6847 * 5823 21 0 * * * * * * 8930 0 0 L 22 * 5521 6402 * 4929 * * 1961 * 916 6191 * * * * * * 3294 * 4997 22 0 * * * * * * 8930 0 0 P 23 3875 * 3023 5189 * 5763 4808 * * 6402 * 3871 1111 6747 6913 3028 4839 * * 6785 23 9 7396 * 0 * * * 8930 1000 0 P 24 4399 * 7039 3770 3267 5690 5068 5390 3953 3944 * 6457 3136 4980 3830 3157 4598 6503 4696 2888 24 0 * * * * * * 8930 0 0 D 25 3640 * 2858 3133 * 4730 5466 6793 3661 * 5956 2761 6711 5117 3789 2946 3894 7070 * 4624 25 15 6588 * 0 * * * 8930 1000 0 I 26 3756 5255 * * 4371 * * 2529 * 3628 4081 * * * * 4208 2384 1917 6417 5967 26 13 6812 * 0 * * * 8930 1000 0 R 27 4574 * 2926 4849 6743 6795 * * 4054 * * 3724 6967 6682 4249 2054 1663 6576 * * 27 15 6583 * 2000 415 * * 8930 1000 0 T 28 4298 6698 3332 1449 6503 * 5406 4632 3694 * 6820 5126 4917 4664 3952 5148 4777 4377 5335 6705 28 0 * * * * * * 8930 0 0 K 29 5032 * 2128 1890 4642 5246 6771 5595 3739 * 6785 4696 6743 3642 5081 3781 4722 5473 * * 29 11 7012 * 2000 415 * * 8930 1000 0 D 30 4850 7143 2119 1840 5821 5591 5747 4194 4821 5734 6719 5872 * 3054 5930 5179 4075 6357 * 5611 30 10 7186 * 2000 415 * * 8930 1000 0 I 31 * 6384 * * 4616 * * 1985 * 1029 5448 * * * * * * 2462 * * 31 49 5289 6994 1742 513 * * 8930 2387 0 E 32 4341 6589 * 4833 4707 6558 6225 5013 1994 3754 6136 5185 * 4360 2405 5441 3487 5021 5508 4554 32 13 6834 * 0 * 0 * 8919 1000 1000 D 33 3932 6520 3023 1880 * 5892 6457 5727 3287 * 6667 3908 * 3497 4425 3449 4151 * * 5649 33 0 * * * * * * 8930 0 0 V 34 3649 * * 4932 2643 * 3259 3041 5799 1990 5277 * * 5387 * 5633 5606 3382 * 4460 34 16 6546 * 2000 415 * * 8930 1000 0 F 35 5830 5632 * * 731 6828 6994 4066 * 2552 4804 * * * 6588 6576 * 5229 * 5091 35 43 5714 6614 1762 504 * * 8930 1771 0 Y 36 3263 7000 * 3050 7021 3814 5744 * 3077 5769 * 3791 4635 4881 3671 2136 5111 5684 6482 5576 36 14 6683 * 2322 322 0 * 8898 1000 1000 K 37 4873 * 4889 3221 6564 4686 6650 5814 2281 * 6494 3914 4239 3189 3622 3064 4376 4457 * 7070 37 28 5678 * 2213 351 * * 8930 1776 0 Y 38 3831 3444 6682 5521 2062 5690 3441 3682 * 4051 4370 6448 * 6705 6698 5850 5076 4643 5904 2896 38 67 4734 6965 2444 293 * * 8930 2915 0 G 39 4604 6680 5238 5653 6781 775 6633 5555 4867 5234 * 4086 6620 6169 4989 * 6996 3542 * 6781 39 85 4380 6754 2402 303 0 * 8919 3384 1000 A 40 4684 * 3032 3259 6524 3988 4513 4512 3214 4250 4952 4921 2806 5749 4133 4190 5158 4446 * * 40 0 * * * * * 0 8901 0 1000 I 41 5512 * 7185 * 4537 * * 1798 5750 3279 6377 5640 4201 * * 5679 5110 1419 * 6624 41 59 5000 6778 876 1136 0 * 8901 2268 1000 R 42 4185 6506 5247 3633 * 5783 5172 3793 3188 3331 6711 4373 * 4167 3431 3777 3958 3205 * 4380 42 85 4510 6206 1992 418 0 * 8908 3390 1000 D 43 5616 5405 3365 3758 4789 5045 4231 3486 3187 6840 5672 3961 4050 5315 4223 3280 4439 4084 6379 6094 43 41 6755 5755 3807 107 * 0 8886 1000 1000 I 44 4514 4323 5671 6528 4683 * 6753 2441 5133 4976 6570 4939 4232 4655 6820 4589 4626 1826 5702 4183 44 43 5102 * 1798 489 554 1650 8865 2449 2433 D 45 4742 6354 3858 4005 5697 5426 5336 4547 2773 4751 6692 4898 5083 4680 2401 4420 4886 3948 6386 3893 45 42 6485 5855 2585 263 0 * 8914 1000 1000 L 46 5605 * 4220 4758 3147 * 4110 3002 3882 2840 4509 5648 5845 6547 4204 4852 4281 3067 * 4872 46 71 4672 6788 1430 669 0 * 8925 2904 1765 K 47 3780 6937 4379 5584 4068 4420 4928 3186 4206 3428 5368 3696 3615 6855 3489 4431 6624 4215 * 3988 47 26 5789 * 2388 306 * 0 8910 1731 1000 N 48 4644 6367 3416 4582 4107 4089 5914 4686 2812 5240 6732 4157 4314 4582 2899 4183 5001 4234 6690 5024 48 41 5736 6729 3509 133 * 0 8910 1758 1000 R 49 4898 * 2236 3893 6564 5373 4161 6080 3714 * 4927 3742 4261 4534 3741 3200 3468 * 5742 6690 49 68 4730 6882 1434 667 1019 981 8898 2934 1716 R 50 * * 4628 4201 4344 2534 * 6540 2865 4439 5784 3881 2893 4968 3354 4199 3988 * * 5552 50 14 6737 * 1585 585 945 1057 8898 1000 1685 G 51 5307 * 3257 3491 6666 3270 5380 5187 2895 5041 5501 3541 5742 4707 3771 3393 4355 5205 5643 5517 51 86 4111 * 1288 760 * 0 8910 3754 1000 G 52 4639 5750 3951 6373 6630 2683 4220 4250 3674 4686 5620 3485 3426 7089 3879 3210 4050 6944 * 5583 52 109 4147 5920 1330 732 * 0 8910 3819 1000 P 53 4557 5641 5768 6013 4560 3199 5193 6682 2283 4377 4329 5056 5812 4945 2668 4303 3792 5261 5302 * 53 35 5802 7339 1623 566 * 0 8907 1739 2238 P 54 5692 6792 6630 6271 3936 1400 5488 6434 4476 5025 6557 4356 4862 5545 3092 3874 6701 4599 * 4529 54 131 3701 6683 2235 344 2030 405 8912 4200 2681 F 55 4534 4382 6672 5004 2173 4356 4393 3382 5679 5523 5643 * 7226 5718 5539 4661 4776 4094 * 2246 55 13 6757 * 2585 263 449 1902 8904 1000 2805 A 56 1350 3406 * * 3991 2528 * 5165 3961 6738 5495 6730 * * 4403 5622 4332 5942 * 6555 56 34 5441 * 2413 300 0 * 8901 2015 1000 F 57 5164 * 5564 4914 1168 3643 * 3668 6650 3262 5537 6965 * * 5285 * 6602 4719 * 3377 57 29 6588 6752 2322 322 * * 8930 1000 0 V 58 3478 4205 * 6431 4195 6571 * 2151 4990 3317 6786 * * * 6628 * 6505 1504 6356 5197 58 38 5256 * 2471 287 * 0 8895 2261 1000 E 59 4610 5785 4206 1784 * 5334 * 5648 4073 4638 6808 3375 * 3860 4043 5273 3197 4265 * 5045 59 15 6628 * 3459 138 * 0 8895 1000 1000 F 60 6981 5782 * 5418 1034 * 6690 * 6976 4355 3586 6431 6538 * * 5530 5993 5096 * 2161 60 15 6571 * 3000 193 0 * 8895 1000 1000 E 61 2674 6448 3553 3356 4448 4747 5662 4339 3775 4328 6974 5279 4694 5188 4290 3515 4435 4851 * 4194 61 13 6793 * 0 * * * 8930 1000 0 D 62 6612 6743 2447 4331 * * 4078 * 4476 * * 2829 * 5605 5266 1892 2587 6808 6473 * 62 18 6371 * 1585 585 * * 8930 1000 0 P 63 3836 * * 2683 4444 6638 4475 4322 3839 4532 * 4629 2168 5105 3884 5626 4667 3941 * 5279 63 17 * 6402 * * * * 8930 0 0 R 64 3562 * 2880 2016 * 6739 5889 4998 4124 7000 6120 4392 6619 2982 4191 3950 5114 5009 6618 5556 64 0 * * * * 0 * 8898 0 1000 D 65 2991 5647 2291 2298 * 4407 5658 6894 5838 5571 * 4474 * 4242 * 2730 4831 5434 * 5270 65 39 5938 6614 1076 928 * * 8930 1730 0 A 66 794 6694 * * 5321 6615 * 5526 6799 4717 5730 * * 6530 6700 4515 3838 2807 * 6163 66 0 * * * * 0 * 8898 0 1000 E 67 3805 5018 3274 2697 6614 * 5618 4337 3191 3964 5012 4301 * 3195 3336 6588 4499 5600 6384 6747 67 0 * * * * * * 8930 0 0 D 68 3075 6494 5336 3196 * 5809 6417 6649 2379 4112 4899 3615 * 4219 2958 4131 5782 5262 6612 4727 68 29 * 5652 * * * * 8930 0 0 A 69 630 4468 5786 6378 6509 * 6457 4306 5579 6395 * * * * 5476 * 5124 3038 * * 69 0 * * * * 0 * 8891 0 1744 V 70 3715 6951 6684 * 4433 * * 2006 4248 2253 4012 * * 6400 4439 * 6862 2545 * 4369 70 59 5820 5496 3058 185 * * 8930 1772 0 Y 71 4200 5175 5105 2727 * 6385 4465 6738 2787 4245 6103 3772 * 3195 3056 4067 4232 4780 * 7126 71 83 6679 4442 1000 1000 0 * 8919 1000 2370 G 72 3315 5786 3906 2863 6497 4713 4595 4747 3560 4407 6739 3775 * 3636 5554 3707 3662 5088 5467 5276 72 15 * 6562 * * 0 * 8905 0 3291 R 73 4835 * * 6990 3163 6775 6385 4754 4992 1248 2226 * 5764 * 5143 6569 5752 7163 * 4709 73 0 * * * * 0 * 8912 0 1000 D 74 5251 * 2565 * * 6561 2278 * 4332 * * 1424 6402 4239 5500 3882 6505 * * * 74 27 * 5775 * * * * 8913 0 0 G 75 6795 * 3754 4473 * 1110 5128 * 4783 5827 6710 2986 * 4696 3569 4898 6763 * * 5342 75 0 * * * * 0 * 8905 0 1752 Y 76 4101 * * 5308 4115 5704 4665 6797 2596 4466 5273 5551 * 4416 3407 3746 2534 3919 6807 3837 76 17 6424 * 0 * * * 8913 1000 0 D 77 5893 * 4117 2795 5777 6847 * 5906 2796 4867 4692 3966 3467 4105 3832 4451 3523 4032 5765 5269 77 27 5741 * 612 1533 * * 8913 1724 0 Y 78 * * * 6135 2426 * 6440 1808 * 1942 3839 * * * * * 6210 3099 6783 4919 78 16 6472 * 0 * * * 8913 1000 0 D 79 6486 6145 2676 5192 4965 2586 3413 * 3041 3635 4998 3789 6607 5159 4008 4058 * * 6424 5594 79 15 6632 * 2322 322 * * 8904 1000 0 G 80 6164 6741 3296 4222 6527 801 5940 * * * 6179 3770 * 6397 5976 4203 4524 * * 7045 80 45 5024 * 1722 521 * * 8904 2418 0 Y 81 * 5898 * 5716 5466 6732 4285 6833 2460 5300 * 4088 5662 4495 1245 4461 6674 5042 * 4860 81 13 6847 * 0 * * * 8904 1000 0 R 82 5154 * 6145 4223 6832 5610 5060 3106 3158 4713 * 4938 2625 4557 2747 3727 4017 4689 * 5920 82 0 * * * * * * 8904 0 0 L 83 * * * * 5358 6808 * 1420 * 1384 4356 * * * * * * 2635 * * 83 0 * * * * * * 8904 0 0 R 84 5001 * 5045 3474 6712 6685 6714 4219 2169 5727 6524 5253 * 4783 2334 3817 5186 3708 * 3678 84 9 7330 * 3000 193 * * 8890 1000 0 V 85 4451 4739 * * 6614 6682 * 2249 * 2822 6925 * 6532 * * * * 927 * * 85 23 * 5970 * * * * 8887 0 0 E 86 6438 * 2547 2124 * 5404 5316 * 4232 * * 4029 * 3448 3393 2558 4383 6600 6671 * 86 19 * 6276 * * 983 1017 8831 0 1713 F 87 6613 * * 5700 2401 * 6600 3420 5578 3371 5510 * 4773 5361 3150 * * 3740 2920 2666 87 15 6640 * 1000 1000 983 1017 8771 1000 1782 P 88 923 5329 4502 4232 * 5413 * * 4767 * * * 5228 6409 5649 2440 4823 6359 * * 88 40 5186 * 1098 908 0 * 8582 1724 1000 R 89 4816 6347 4696 4280 5363 * 5340 5480 2228 4776 * 4075 5291 3393 1961 5012 3779 * * * 89 18 6308 * 3322 152 * * 8491 1000 0 S 90 4715 * 3519 3023 * 3667 * * * * * 3963 2155 5051 3835 2496 4979 4122 * 5814 90 0 * * * * * * 8205 0 0 G 91 4727 * 2722 * * 1734 * * 2918 * * 3935 4974 5557 2488 5728 5064 * * 4952 91 0 * * * * * * 7927 0 0 R 92 3810 * 5698 3769 * 5553 * * 2417 * 5910 5460 3704 4607 1284 5650 4652 * * * 92 0 * * * * * * 7542 0 0 G 93 3965 * 2997 4273 * 2839 5292 * 2082 * * 3123 3979 5047 5449 3759 4256 * * * 93 0 * * * * * * 7375 0 0 T 94 5061 * * * 2989 * * * 4021 * 4774 3131 2182 2983 3976 5319 2349 * * * 94 0 * * * * * * 6981 0 0 G 95 * * * * * 0 * * * * * * * * * * * * * * 95 0 * * 0 * * * 5345 0 0 //