HHsearch 1.5 NAME d1x2ma1 FAM FILE d1x2ma1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1x2ma1.a3m DATE Mon Mar 8 18:33:30 2010 LENG 52 match states, 52 columns in multiple alignment FILT 106 out of 1810 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.1 EVD 0.4489 1.4562 SEQ >ss_dssp CCCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCC >sa_dssp EEEDEDBADDBAEEDDDEBDEEDAEDACEDBEDEDECACECADDCCEEDEEE >ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC >ss_conf 9402799999999847897889999999982888889899957414321588 >Consensus TxxqxxxLexxFxxxxxxPsxxxxxxLaxxxglsxxqVxxWFqNrRxkxkxs >d1x2ma1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS >UniRef50_Q7YTB6(200-250:284) Engrailed n=2 Tax=Coelomata RepID=Q7YTB6_SACKO E=5e-06 s/c=1.02 id=29% cov=100% TAEQLERLKREF-DDSRYLTEQRRQSLAKELKLNESQIKIWFQNKRAKIKKS >UniRef50_UPI00004DA10E(455-501:1305) Zinc finger homeobox protein 2. n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00004DA10E E=8e-06 s/c=1.09 id=28% cov=83% -------LNSFFE-YTAYPRDSEVENLSALLGLPGRVVVVWFQNARQKAR-- >UniRef50_C3W867(53-106:349) Putative wuschel homeobox protein WOX2 n=1 Tax=Ginkgo biloba RepID=C3W867_GINBI E=0.0005 s/c=0.85 id=16% cov=98% TKEQIAVLEGLYRQGIRTPTAQQIQQITSRLrmfgNIEGKNVFYWFQNHKARQR-- >UniRef50_O45019(871-925:1623) Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=O45019_CAEEL E=0.0001 s/c=0.87 id=26% cov=88% ------VLRQYFNINNS-PSEAQIKEMSQKASLPEKVIKHWFRNTlfkeRQRDKDS >UniRef50_A7EG62(76-119:710) Predicted protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EG62_SCLS1 E=0.0009 s/c=1.02 id=20% cov=87% TPEQTQILEAAYALD-HYPPPGIKMILMWKTGLSYRKVKNWFEHK------- >UniRef50_Q8VHG5(102-153:380) OBOX4 (Fragment) n=24 Tax=Mus musculus RepID=Q8VHG5_MOUSE E=2e-06 s/c=1.02 id=28% cov=83% ------LLQEHF-HQCQNPDLEQRKALALLIGVTEYKIQTWFKNRRAKE--- >UniRef50_B6IGY8(175-225:283) Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=B6IGY8_CAEBR E=1e-05 s/c=1.00 id=19% cov=100% TVAQVTILQAKF-QENPYISREEKLTMAMTFGSTPLQIKRWFKNQREVQRRS >UniRef50_Q4H2X9(46-94:314) Transcription factor protein (Fragment) n=1 Tax=Ciona intestinalis RepID=Q4H2X9_CIOIN E=0.0003 s/c=0.94 id=22% cov=94% -AKKRTTLDKQFE-RNPKPSSEDLQAIAEECKMEKEVVRVWFCNRRQKQK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * 2936 202 * * * 1 0 * * * * * * 5271 0 0 A 2 1244 * 4302 * * 5098 * * 2830 * * 5514 3554 5417 5328 3666 5449 3316 * * 2 0 * * * * * * 5522 0 0 Q 3 4176 * 5446 1275 * 5605 4759 * 3558 * * * 3961 2525 5387 * 3572 * * 5635 3 0 * * * * * * 5560 0 0 P 4 3244 * 4564 3659 * * * * * * * 4333 3328 821 * 4808 * * * 5494 4 0 * * * * * * 5560 0 0 N 5 * * * * * * 5329 2222 3567 2309 5214 3150 * 5376 * 3585 3124 3147 * * 5 0 * * * * * * 5640 0 0 A 6 2354 * 5093 2033 * 6161 * 5531 4617 5703 * 5435 2940 3753 4061 4987 3104 * * * 6 0 * * * * * * 5903 0 0 I 7 6387 * * 4095 3612 * 6217 1868 4716 3236 6172 * * 6391 5710 6402 3445 1902 * * 7 0 * * * * * * 5974 0 0 L 8 * 5988 * * * * * * * 136 3751 * * * * * * * * * 8 0 * * * * * * 6029 0 0 E 9 * * 6536 689 * * 5205 6430 2981 * 5675 4363 * 3199 6131 * 6344 * * * 9 0 * * * * * * 6030 0 0 K 10 2727 * 4104 4030 * 4206 6809 * 2613 6178 5904 4843 6480 3339 3385 3330 3436 * 6861 4989 10 0 * * * * * * 6038 0 0 V 11 3571 5180 * 3833 3580 * 2963 4132 5643 3409 4604 5688 * 5742 7105 4942 4708 3568 3391 3349 11 0 * * * * * * 6038 0 0 F 12 * * * * 537 * * * * 6032 * * * * * * * * 5947 1840 12 283 * 2487 * * * * 6038 0 0 T 13 3497 5030 4689 2824 6154 * * * 3261 3966 6544 3837 * 2517 2785 3797 4850 * * 6451 13 129 * 3552 * * 0 * 5979 0 4455 A 14 3226 6285 5291 4043 * 5758 4784 6057 2306 5070 6582 4598 * 2572 4203 3930 3089 4837 * * 14 198 * 2965 * * 0 * 6084 0 3116 I 15 * 5756 3197 3099 5281 3654 2888 3752 4389 6171 * 2457 * 3797 4691 6545 4739 5041 * 6920 15 373 3391 2916 907 1099 0 * 6062 3143 3865 T 16 4305 4347 4810 * * 4790 6656 6069 4618 * 5785 1572 * 4808 * 2709 2286 * * 6095 16 165 6294 3394 1000 1000 0 * 6314 1000 3915 K 17 3555 * 5360 5525 * 5327 3628 6321 2967 6919 * 5721 1686 3268 2706 6639 5833 * * * 17 182 5622 3348 0 * 0 * 6286 1542 3771 H 18 * 5545 * 6446 3917 * 3045 6857 4154 4620 * 3856 * 5153 5270 4446 3736 6297 * 1260 18 0 * * * * 0 * 6366 0 3283 P 19 4991 6338 * * * * * 4006 6439 3466 * * 380 * * 6581 * 6289 * * 19 0 * * * * * * 6375 0 0 D 20 5331 6345 2619 6515 * 5044 * * 5704 * * 2819 5083 * * 1569 2232 * * 5749 20 0 * * * * * * 6375 0 0 E 21 3683 * 4675 3451 6608 3754 5304 5793 3107 5183 * 7065 3790 3348 3357 3559 4088 4332 5952 4829 21 0 * * * * * * 6375 0 0 K 22 3796 * 3391 2255 6004 4381 5814 4997 3771 4047 7199 5581 7160 3307 4047 4315 3753 5478 6991 5273 22 0 * * * * * * 6375 0 0 R 23 5334 * 3534 1788 * * 5709 5668 3438 6030 5541 6184 * 2413 3922 6220 3256 4446 * * 23 17 * 6439 * * * * 6375 0 0 L 24 4972 5810 5746 * 5782 6281 * 2380 2514 3236 5130 * * 6211 1716 * 6395 3856 * * 24 13 6847 * 2000 415 0 * 6366 1000 1000 E 25 3810 5704 3457 2149 * 6348 6517 4531 3131 5221 4822 4771 * 3023 4359 4356 4235 6075 6802 5953 25 14 6724 * 2000 415 * * 6379 1000 0 G 26 3624 * 3506 2361 * 5505 5196 5654 2910 4785 4960 5674 * 3538 3627 4528 4024 4658 * 4857 26 27 5750 * 1000 1000 * * 6379 1000 0 L 27 * * * * 6587 * * 2573 * 514 3724 * * * * * * 5260 * 5672 27 0 * * * * * * 6379 0 0 S 28 786 4882 * 6874 * 4107 * 5749 * * 5314 * * * 6491 2485 4260 4880 * * 28 0 * * * * * * 6378 0 0 K 29 3344 * 5378 3323 5727 6384 4951 5480 2172 4916 6260 5150 * 3112 3219 4140 5032 4006 * 5435 29 0 * * * * * * 6378 0 0 Q 30 4038 * 5475 2705 * * 5775 5261 2844 3999 6756 6176 * 2530 2970 3490 3800 6065 6820 6842 30 0 * * * * * * 6378 0 0 L 31 4578 4142 * * 6260 5169 * 3906 * 1413 5152 * * * * 3954 1939 3947 * * 31 19 6256 * 2000 415 * * 6378 1000 0 D 32 * 5079 3818 5750 * 983 * * 4318 6563 6109 2502 * 4401 * 3884 6918 * * * 32 51 4836 * 2109 381 * * 6378 1973 0 W 33 * 6609 * * 7022 5962 * 3414 * 921 3162 * * * * 5414 * 2736 4697 5613 33 0 * * * * * * 6378 0 0 D 34 6026 6842 3769 4263 * 4852 5585 * 4441 * * 5403 3395 5713 5586 1517 2053 * * * 34 0 * * * * * * 6378 0 0 V 35 5993 * 5802 2282 5729 5090 5612 4311 3152 4076 6145 5367 2797 4398 4615 5018 4356 4832 * 3564 35 0 * * * * * * 6378 0 0 R 36 4780 5521 5394 4130 * 5763 4048 6221 2411 5574 7034 3843 7066 4553 1845 3705 4370 6936 * 5589 36 0 * * * * * * 6378 0 0 S 37 4435 * * 3448 * * 6820 6862 3773 * * 4159 * 1345 3267 3982 4310 3414 6574 * 37 0 * * * * * * 6378 0 0 I 38 * * * * * * * 1445 * 4551 * * * * * * 5095 834 * * 38 0 * * * * * * 6378 0 0 Q 39 3873 * 4555 4007 4826 6346 5457 6793 2192 * * 4554 * 2132 3080 4270 4014 * * 5257 39 0 * * * * * * 6377 0 0 R 40 4929 * * 6363 7152 6459 6233 2204 3535 7427 6663 2228 * * 5559 4544 3598 2221 * 5075 40 15 6570 * 4000 93 * * 6373 1000 0 W 41 * * * * 6382 * * * * * * * * * 5941 * * * 60 6298 41 0 * * * * * * 6373 0 0 F 42 * * * * 163 * * 5746 * 5480 6164 * * * * * * 5474 * 5080 42 0 * * * * * * 6373 0 0 R 43 4135 4741 6642 5400 6458 * 4921 5918 3417 6352 4637 4557 * 1388 3538 3675 4901 5448 6545 6814 43 0 * * * * * * 6372 0 0 Q 44 * * 6759 4801 * * 4507 * 4354 * * 431 * 4232 4398 6729 6640 * * * 44 13 6822 * 1000 1000 * * 6362 1000 0 R 45 4351 6703 * * * * 4163 * 2426 6642 * 5422 * 3996 932 5678 4585 * * 5778 45 20 6174 * 2000 415 * * 6361 1000 0 R 46 6070 * * * * * * * 4968 5661 * 6074 * * 123 * * * * * 46 0 * * * * * * 6365 0 0 N 47 1708 * * 4976 * * 4625 5049 5523 4594 6440 3541 * 3035 2752 4352 3293 6743 * * 47 0 * * * * * * 5979 0 0 Q 48 6239 6412 * 5309 * * 5181 6081 1385 4257 5468 6490 * 3561 2016 6009 4623 4785 * 6146 48 0 * * * * * * 6165 0 0 E 49 3254 * 2776 1982 * 5702 4340 6707 4486 5468 5508 5229 * 3021 * 3320 * * 5281 4238 49 0 * * * * * * 6165 0 0 K 50 * * * * * * * * 915 * * * * * 1090 * * * * * 50 0 * * * * * * 6156 0 0 P 51 4029 * 3941 * * * 4266 * 2100 * * * 1326 * 2895 4183 * * * * 51 0 * * * * * * 4887 0 0 S 52 3861 * * * * * * * * * * * * * * 234 3626 * * * 52 0 * * 0 * * * 4514 0 0 //