HHsearch 1.5 NAME d1wiaa_ FAM FILE d1wiaa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1wiaa_.a3m DATE Tue Mar 9 00:15:07 2010 LENG 95 match states, 95 columns in multiple alignment FILT 111 out of 689 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4348 0.0643 SEQ >ss_dssp CCCCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCCCCCCCCCCCCCCCC >sa_dssp EEEEEEDCDADACBEEEDDEEAEAEDEBDACEABDDCBEEECECBCACBEEEDAECEDEDADDBEAEEECDADACDDEEEEEEEEEEEEEEEEEE >ss_pred CCCCCCEEEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHEEEEEECCEECCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC >ss_conf 98788728999996799899999746550899999872499100899972436256433158708999879999965888888877677888899 >Consensus gxxxxxxixIxvkxlxgxxxxixvxxxxTVxxlKxxixxxxxxxqrLixxGkxLxddxxtLxxxxixxxxxixlxxxxpxxxxxxxxxsxxxsxG >d1wiaa_ GSSGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAAVSGPSASSGPSSG >UniRef50_B3L2N8(4-94:1479) Ubiquitin-like protein, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L2N8_PLAKH E=2e-06 s/c=0.59 id=19% cov=94% ----EGNMKIKIKTIDNEEFELTVKGDTSAEEIKNIIAerkSVDKQDIRLIYQGQCLAN-EKSIADYNIQNDHIIHLVL-RKKENSASPNDENGNSA- >UniRef50_C3Z502(2-92:434) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z502_BRAFL E=5e-05 s/c=0.54 id=22% cov=94% -----STFQVMVRFNSNHSFLVTVHTSWTIARFKQEVgrtQGVPSGQIHILFAGRDLSDSLR-IEDCQLGQQTVIHAISGLPQLSVDARSSAAAPRS- >UniRef50_C5Y6Q7(15-95:179) Putative uncharacterized protein Sb05g005885 (Fragment) n=1 Tax=Sorghum bicolor RepID=C5Y6Q7_SORBI E=2e-09 s/c=0.78 id=15% cov=71% -------------------KLEEVDLSETIASVKAMVYEKegcPPDAQRLVFNGVEARKDYCTLDEYGFQYGTDIYLILRLAGGAPPP---------- >UniRef50_C3ZIR1(147-229:232) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZIR1_BRAFL E=3e-07 s/c=0.68 id=20% cov=79% ------EVSLKLRLSTGKDLKLNVQTTDSVLHIKKRLNAEEGiesSRQRWYFSGKLLQDKMR-IEDAKIPKGFVVQVIVSQPDP-------------- >UniRef50_A2FGA4(1-88:331) Ubiquitin family protein n=1 Tax=Trichomonas vaginalis RepID=A2FGA4_TRIVA E=5e-05 s/c=0.55 id=19% cov=81% ----------------DESFLVEVQDTGTVSDLKHEIyimFGYIPQNQTIVYKGKVLDNETQ-LKTKGIHEMSKVYMTYKKPKVVKRNRNSNFAPS-- >UniRef50_D0FZQ9(1-82:158) Interferon-stimulated gene 15 n=1 Tax=Paralichthys olivaceus RepID=D0FZQ9_PAROL E=1e-05 s/c=0.62 id=23% cov=78% ---------IIITMLNGRVRHTDGETQDTVGWLKQLIQQklaVPAERQKLLYDNGQrtdLSDDSRPVGSYGLHAASRLSLLIEPSPPA------------ - >UniRef50_B9GQ45(17-113:950) Predicted protein n=5 Tax=rosids RepID=B9GQ45_POPTR E=2e-15 s/c=0.86 id=23% cov=100% GEGSDATIELNIKTLDSQIYSFQVDKNMPVSVFKEKIANeisIPVSQQRLIFRGRVLKDEHLLSE-YQVENGHTLHVVARQPTQPQPSAGTSSGDTMG >UniRef50_Q9LTU5(1-84:395) DNA-damage inducible protein DDI1-like n=5 Tax=Magnoliophyta RepID=Q9LTU5_ARATH E=1e-06 s/c=0.65 id=13% cov=49% ------------------------------------------QQQQLLYNGNEMGNSDKLSA-LGVKDDDLLMMMVSNASSGATSAAGN------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3213 0 0 S 2 3464 * 3349 3422 * * * * * * * 3540 * * * 1160 2438 * * * 2 0 * * * * * * 4179 0 0 S 3 3477 * 2505 3580 * 3568 * * * * * * * 2679 * 1604 3626 * * * 3 0 * * * * * * 4412 0 0 G 4 2021 * * * * 1399 * * * * 4070 * * * * 2418 2967 * * * 4 0 * * * * * * 4766 0 0 S 5 4822 * 3890 1242 * 3549 * * 4578 * * 4438 * 4465 * 2576 3509 * * * 5 55 4733 * 0 * * * 5424 1000 0 S 6 3607 * 2911 5015 * 1748 * * 3792 4834 * 3848 * 4845 * 2879 4116 4285 * * 6 0 * * * * * * 5654 0 0 G 7 * * 4181 1397 * 3302 * * 5287 4054 * 4406 4280 4200 * 3812 3007 5092 * * 7 0 * * * * * * 5869 0 0 I 8 * 4566 * * 4246 * * 1452 * 3279 2070 * * 5395 * * * 2519 * * 8 0 * * * * * * 6108 0 0 N 9 4476 4820 * 3417 * * * 5838 3129 4823 * 3834 4527 2344 2837 4183 2895 5721 * * 9 0 * * * * * * 6120 0 0 V 10 * * * * * * * 1081 * 2109 * * * * * * * 1759 * * 10 0 * * * * * * 6240 0 0 R 11 * * 5336 * 2945 * 5951 3487 2305 4723 4627 4412 * 4709 2674 4664 2785 5879 5967 * 11 0 * * * * * * 6240 0 0 L 12 * * * * 4709 * * 2272 * 1772 * * * * * 5076 * 1210 * * 12 27 * 5755 * * * * 6240 0 0 K 13 * * * 5104 * * * * 711 * * * 5074 3688 2399 * 3980 * * * 13 13 * 6856 * * 0 * 6160 0 1000 F 14 * 6311 3795 * 3375 5977 * 5862 * 2648 4655 5588 * 5517 5853 3125 1565 5681 * 4194 14 0 * * * * * 0 6206 0 1000 L 15 4787 * * * * * * 3394 * 847 4348 4826 4184 * * 3109 4791 5552 * * 15 0 * * * * 0 * 6228 0 1000 N 16 * 5384 2959 4788 * 4556 4786 * 3502 5535 * 1588 * 5187 5101 3241 2969 * * * 16 58 * 4678 * * * * 6301 0 0 D 17 * * 2795 3759 * 1071 * * 4052 * * 3350 5667 4482 4251 5025 * * * * 17 0 * * * * 0 * 6282 0 1808 T 18 * * 4350 3171 * 4926 4986 5844 1750 6054 * 6948 5639 3326 3374 4098 2617 * * * 18 0 * * * * * * 6350 0 0 E 19 5724 * 3977 3052 7023 4601 5508 3754 3663 * 6091 * 5922 4384 4896 2882 1989 4201 * 5764 19 70 5924 5025 2322 322 * * 6296 1000 0 E 20 * 5809 * 3673 2293 * 4456 3867 3369 2877 4711 * * 5080 3074 4600 5731 4484 6092 4419 20 0 * * * * 0 * 6488 0 1678 L 21 6387 * 6426 3041 5176 * 4637 3874 3340 2723 * * 6006 4986 4462 3528 2608 3427 * 4947 21 18 6308 * 2585 263 * * 6548 1000 0 A 22 5454 * * 4809 6440 * 6027 1857 * 1779 * 6179 * * * 4819 5711 1915 * 6179 22 0 * * * * * * 6496 0 0 V 23 4621 * 3630 1692 6103 * 4458 * 4393 5238 * 2774 * 3934 4838 4577 3237 4628 * * 23 0 * * * * * * 6472 0 0 A 24 3260 4841 6119 * * 5144 * 3099 * 3182 4667 * * * * * 5743 907 * * 24 17 6417 * 0 * * * 6481 1000 0 R 25 5374 * 2313 3447 6545 4756 6253 * 3940 * 6159 3815 4613 3876 2740 2328 6150 * * * 25 13 6795 * 0 * * * 6485 1000 0 P 26 3629 * 3886 4586 5168 5405 * 5504 4998 2822 * 6129 1813 4668 4862 3274 3724 6382 * * 26 0 * * * * * * 6515 0 0 E 27 4151 * 4114 2624 * 5659 5543 * 4102 6257 5666 2840 * 3768 5672 2560 2502 * * 6300 27 20 6163 * 1585 585 * * 6525 1000 0 D 28 3712 5678 1524 2735 * 5896 6075 4746 6731 4080 4975 * * 5006 * 3137 3657 * 6274 * 28 0 * * * * * * 6546 0 0 T 29 * * * * * 5412 * 6319 3829 * * 6794 4980 * * 2956 490 * * 6359 29 0 * * * * * * 6516 0 0 V 30 5665 * * * * 6174 * 2414 * 4295 * * * * * * 5703 497 * * 30 0 * * * * * * 6516 0 0 G 31 2444 * 4064 2788 5351 2365 6183 * 3797 3895 * 6980 6810 4699 4762 3428 6359 5085 6232 * 31 0 * * * * * * 6516 0 0 T 32 4188 * 2420 1991 * 5381 4638 6181 5554 6312 5552 4210 * 3725 5176 3185 4033 5490 6158 6788 32 0 * * * * * * 6516 0 0 L 33 5703 * * * 2547 5724 * 2857 * 1068 5325 * * * * * * 2874 6100 * 33 21 6120 * 1585 585 * * 6516 1000 0 K 34 6120 * * * * * * * 222 * * * * 5790 3459 5703 * * * * 34 74 4328 * 1756 507 * * 6516 2641 0 S 35 3520 * 4428 2830 * * 5885 5999 2898 * 5724 3668 * 3188 2433 3790 3951 * * 5084 35 105 3831 * 1720 522 * * 6516 3337 0 K 36 * * * 2940 6322 * 5589 5530 1709 4364 4401 5270 * 2577 2322 * * 5680 * * 36 59 4642 * 1585 585 * * 6516 2211 0 Y 37 5478 * * * * * 5495 1174 4494 2147 * 5591 * 4715 6789 * 5999 2880 * 5449 37 255 2627 * 1790 492 * * 6517 4300 0 F 38 2958 4472 5100 3989 2498 6306 3863 4890 5971 3121 5411 6461 * 3438 5753 3694 6203 6067 * 4067 38 133 3505 * 1585 585 * * 6555 3545 0 P 39 4267 * 4243 2817 5676 3492 4498 5532 3911 * * 2806 5350 3406 5578 2727 3920 6306 * * 39 156 3289 * 1626 565 * * 6555 3893 0 G 40 4447 6306 * 3377 6510 5868 5429 2391 3165 4242 7030 5714 * 4403 4785 6513 4387 1984 * 5870 40 180 3089 * 2174 361 * * 6555 4106 0 Q 41 3613 * 4534 1809 * * * 5881 4190 4580 * 6319 1657 4673 * 5278 3774 6927 * * 41 67 5069 6010 1249 788 * * 6513 1911 0 E 42 3128 * 5597 4322 * 2604 5585 5101 4235 6538 * * 1893 6214 5682 3732 3686 3616 * * 42 274 2530 * 1686 537 0 * 6438 4270 1000 S 43 4757 * 3099 2381 6088 3515 4955 * 3350 * * 3489 * 3759 * 2609 4570 5327 * 5159 43 46 5754 6297 636 1488 * * 6464 1733 0 Q 44 3861 * 3997 3724 5853 6743 6178 * 3414 3972 4969 4584 * 1990 2729 4502 4580 4931 * * 44 90 4815 5319 2306 326 * 0 6945 2135 1000 M 45 * 5631 5858 * 4993 * * 2770 * 3295 4652 * * 802 * * * 4253 * 5882 45 17 6435 * 1585 585 1512 623 6660 1000 2047 K 46 * 4888 5856 5414 * * 4217 5686 1852 * 5606 4759 * 5095 1218 * 6265 4449 * * 46 41 5170 * 1585 585 0 * 6736 1704 1579 L 47 * * * * 5145 * * 2657 * 479 4594 * * * * * * 6288 4582 * 47 0 * * * * * * 6736 0 0 I 48 * 5840 * * 3235 * * 1504 6670 2417 5126 * 5920 * * 4655 4268 2923 6226 4482 48 48 4943 * 0 * * * 6736 2135 0 Y 49 6680 5594 * 6606 1560 5907 3685 * * 4603 5073 * * * * * * 4767 4390 1433 49 32 6911 6191 1000 1000 * * 6736 1000 0 Q 50 3181 5517 4240 4264 * 4038 6457 * 2933 5017 6864 2491 5895 2906 3402 3479 6991 * * * 50 0 * * * * 0 * 6644 0 1000 G 51 4582 6798 5929 5315 * 366 * * 5871 * 6293 4802 * * 5365 5428 5747 * * * 51 0 * * * * * * 6643 0 0 R 52 5174 6666 6172 5253 * 5652 4884 5378 1448 6899 4919 4813 * 2851 2076 * * 5306 * * 52 62 4889 6870 1282 764 * * 6643 2165 0 L 53 4641 5414 6705 2411 4345 * 6662 3457 5366 4272 6206 5229 3203 3570 * 6591 5881 2150 6297 6113 53 54 6402 5331 1585 585 0 * 6638 1000 1000 L 54 4860 * * 6156 5861 * * 4304 * 330 4487 * * 5969 * 6346 * 6000 * * 54 336 6154 2369 0 * 0 * 6616 1000 1748 Q 55 4743 6588 3914 3426 * 4638 4385 5982 2932 3728 * 4499 5690 3127 3857 2793 3455 * * * 55 27 * 5736 * * 0 * 6693 0 5024 D 56 * 6021 1024 2900 * 5903 6188 6399 3498 * * 3145 4495 * 4357 6946 6198 * * * 56 38 * 5269 * * 0 * 6669 0 2022 P 57 5079 * 1130 2720 * 5101 5801 * 6512 6685 6516 3325 5256 6021 5678 3266 5782 * * * 57 91 * 4030 * * 0 * 6792 0 2450 A 58 4453 * 2532 3506 6109 6006 3551 * 2788 4719 4402 3687 * 6211 5372 3334 3110 * * 5821 58 159 * 3258 * * 227 2780 6777 0 3351 R 59 3488 5130 5265 3854 * 6657 5175 5318 2331 4054 5288 4840 6165 3601 2784 4091 3918 * 5135 6599 59 105 * 3836 * * 0 * 6789 0 4005 T 60 * 5130 * * 5937 * 5933 4713 6049 2566 * 5799 4427 6632 6778 3266 1054 4930 * 6100 60 16 * 6532 * * 0 * 6705 0 3437 L 61 6889 * * 5579 4680 * * 3403 5739 655 4394 5812 * 5799 * 5777 6597 3804 * * 61 0 * * * * 0 * 6790 0 1000 S 62 2618 * 3396 1993 6135 3866 5540 * 3889 * * 5805 * 4085 5035 2350 6002 * * * 62 53 * 4783 * * * * 6801 0 0 S 63 3766 5764 2576 2389 5444 5355 5177 6694 6682 * 6327 4199 * 3295 * 2244 5168 5817 * 5079 63 28 * 5696 * * 0 * 6799 0 2925 L 64 4759 3060 * 6655 4599 5759 5625 4799 4862 2460 * 4527 * 5266 5819 5590 * 4373 * 1535 64 36 * 5323 * * 0 * 6798 0 1712 N 65 6629 * 4721 5187 * 1445 5179 5772 2697 6125 6803 2388 * 4113 4948 4994 * 5554 * * 65 0 * * * * 0 * 6789 0 2113 I 66 5579 * * * 5227 * * 1409 * 2090 4776 * * * * 6236 5165 2097 * 5089 66 0 * * * * * * 6801 0 0 T 67 6519 * 5479 2508 5524 3855 4494 5263 3223 4543 * 4680 3959 2821 * 3592 3108 4801 * * 67 0 * * * * * * 6795 0 0 N 68 4436 * 1838 3564 * 5460 5210 * 4213 * * 2519 2891 5912 5943 3507 6009 5441 * 5850 68 9 7398 * 0 * * * 6795 1000 0 N 69 6369 * 2427 4217 * 1509 4660 * 4646 6219 6286 2631 * 4639 4834 4747 5860 * * * 69 8 7431 * 2807 222 * * 6803 1000 0 C 70 3519 3358 3580 5199 4932 6213 4378 * 4329 5984 6809 4953 6344 4789 * 1546 4031 5242 * 5336 70 0 * * * * * * 6795 0 0 V 71 5040 * 5817 5976 4386 * 6447 3060 4226 4266 4690 5715 * 5932 5192 * 1615 2163 * * 71 0 * * * * * * 6730 0 0 I 72 * * * * * * * 1625 * 1878 5138 * * * * * * 1413 * * 72 51 * 4851 * * * * 6730 0 0 H 73 4965 * 4388 5341 4132 6995 1389 4042 * 5425 3808 5350 * 3752 4590 5447 6652 4195 * 3926 73 30 * 5613 * * 0 * 6693 0 2158 C 74 5978 3863 * * 5501 * * 4941 * 1176 2839 * * * * 5784 6439 2092 * 6132 74 0 * * * * 0 * 6803 0 1592 H 75 6712 * * 5801 6385 6010 3755 2793 * 2423 2835 4657 * 5987 6344 6693 4626 1921 * 5780 75 101 3885 * 3342 150 * * 6765 2363 0 R 76 3287 6146 5514 5731 * 6195 * 2011 3904 2973 * 5451 * 5866 3795 5335 * 2098 * 5932 76 18 7507 7122 1000 1000 * * 6744 1000 0 S 77 4408 * 4796 4023 * 5450 5087 5010 2612 6013 * 4638 5163 4697 2126 2277 4296 * * * 77 41 5659 6891 1000 1000 0 * 6747 1751 1000 P 78 4811 * * 4734 5512 5552 * 4787 3461 2919 6656 4602 2017 4023 2582 3659 * 5756 * * 78 25 * 5885 * * 0 * 6701 0 1000 P 79 4418 * 4671 4869 * 3743 * * 3392 5687 * 5011 1079 6006 3979 4140 4975 5758 * * 79 19 6286 * 0 * 963 1038 6571 1000 1792 G 80 2735 * 5469 4312 * 2104 * 6378 2786 6380 * 3727 3149 3763 5539 3627 6517 * * * 80 21 6091 * 0 * 0 * 6524 1000 1000 A 81 2555 * 5753 4538 6118 2958 * 6664 4720 4804 * 3981 2601 5239 5135 3114 3528 4150 * * 81 22 6044 * 0 * * * 6762 1000 0 A 82 1795 5725 6191 4184 * 4231 * 5075 4170 5465 * 3226 3757 5247 * 2368 6229 4352 * * 82 0 * * * * * * 6721 0 0 V 83 2642 * 4839 4165 * 3759 * 5259 4588 4884 * 3936 4669 6176 5477 2600 2850 2953 * * 83 0 * * * * * * 6739 0 0 S 84 2924 * 4717 5450 * 4475 * 4656 4796 5259 * 2922 2143 4746 5351 2540 3867 * * * 84 0 * * * * * * 6739 0 0 G 85 2222 * * 4147 * 3541 * * * 5088 * 4507 1983 5865 4765 2232 5773 4970 * * 85 109 4314 5485 747 1308 * * 6732 2237 0 P 86 3101 * 5952 5996 * 3575 5749 * * 5725 * 4726 1652 4942 3528 2819 3365 5940 * * 86 22 6021 * 1000 1000 0 * 6661 1000 1000 S 87 2492 * * 3683 4044 3736 * * 3543 4719 * 3675 5365 5104 4862 2357 3015 * * * 87 29 * 5655 * * * * 6726 0 0 A 88 2942 * 3749 5364 4414 4080 * 5445 4329 4621 * 4457 2667 * 4235 3091 2640 5800 * * 88 0 * * * * 0 * 6661 0 1000 S 89 1925 * 5531 4171 * 4372 * 5552 * * * 2799 * 5415 * 1482 4837 5064 * * 89 32 5490 * 1000 1000 * * 6687 1000 0 S 90 2113 * * 4339 5018 4513 5741 5716 3542 5382 * 4399 5690 3833 4437 1782 * 5421 * * 90 0 * * * * * * 6570 0 0 G 91 2666 * * 5259 * 2424 * * 5567 * * * 1906 4717 5171 2904 3919 3706 * * 91 30 5591 * 1585 585 * * 6450 1000 0 P 92 5238 * 5646 * * 5078 * * * * * 4573 1312 * 5522 3073 1805 4260 * * 92 0 * * * * * * 6364 0 0 S 93 3629 * * 4961 * 4073 * * * * * 3488 * * 3945 967 2986 4798 * * 93 0 * * * * * * 6142 0 0 S 94 2444 * 4918 3714 * 5125 * * 4647 * 5091 * 4793 3176 * 1391 4769 4493 * * 94 0 * * * * * * 5800 0 0 G 95 * * * * * 0 * * * * * * * * * * * * * * 95 0 * * 0 * * * 4555 0 0 //