HHsearch 1.5 NAME d1vr8a1 FAM FILE d1vr8a1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1vr8a1.a3m DATE Mon Mar 8 19:47:43 2010 LENG 127 match states, 127 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.3 EVD 0.4264 -0.0711 SEQ >ss_dssp CCTTSCHHHHHHTTCBTTBEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEESTTHHHHHHHHHTCCCCEEEEECSSEEEEEEEETTEEEEEEEETT EEEEEEESSCHHHHHHHHHHHHHTSCC >sa_dssp BCDECDCDDAADDACCDECDCDDDEEBEDBEEBEADCCBABADCEDCDADACABDCEEADDBADDACEDEEECEDDDDEEDADBCBDCEECCBBACBDDC BABAACBDEBBDDABDCACECBEECEE >ss_pred CCCCCCHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCC EEEEEECCCCHHHHHHHHHHHHHHHCC >ss_conf 9753114655432137706578700004543213304689997279629999973953235777523512356799716750566850793799999085 899996386678899999999887259 >Consensus PPxsySlxsAIxxLxxxxYxLvxxxeIdxyGxvxxkGxxavfxxxxgxxxxfxyxdExxkxxwkKlnxxxxirsxxxlxnygxfSxxxxgxxivvWwKxn WlfvixgxxxxeeFxxxVxxvyxxxkx >d1vr8a1 PPEAYSLDTAIFVLETRDYRLSDVKEIDSYGDVEXKGKVAVFETEYGPVFLYVYKGEEAKKIWKKLNGRVSIRSVLDLPNXGKFSTVSNGKKIVAWWRKN WLFIVEGKNGVEEFVKHVYRVYEEXKQ >UniRef50_A8F4M0(25-146:159) Putative uncharacterized protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4M0_THELT E=2e-13 s/c=0.63 id=40% cov=93% PPRVYSISSAVKSLQD-SYLLVFVEEVDGYGPVEAKGVVASYVHDGKNYLFYGFKfyDESPKVYWKKIVKEIGIwssRTYFDLLNSGLYSSKKDGKYIVV WWKDVWMFIVESSSNAEDFANYV--------- >UniRef50_B7IF46(28-154:158) Lipoprotein, putative n=2 Tax=Thermosipho RepID=B7IF46_THEAB E=9e-08 s/c=0.46 id=36% cov=93% -PGSFSLKSAISLLDSYEYPLVETGEINSlYGVQLNRGMYGVFKNFDGMFYVFKYEDEKlTKNDWNRL--IKTFGSVLKI-NYFKFSLFDRGylqtkfed LNVITWWKGNWLFVITGNNS-KEFFEYINKVY----- >UniRef50_A7HMP8(35-165:167) Putative uncharacterized protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMP8_FERNB E=3e-27 s/c=0.93 id=31% cov=98% PPSSYSQEAAINVLSNK-YYLIDSGYIEGFGDIYlGEGRYAIFDGVDGIFMVFKYDDEEHakeswNKITKKYNNPFKLKYFkVNMGDYGVFTLRLENTDL YVWYKDNWLIVISG-DKIDNFVKDVNEIYKTIK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 2028 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 2396 0 0 E 3 * * * 2165 * 2017 * * * * * * * * 1908 1924 * * * * 3 0 * * * * * * 2396 0 0 A 4 2165 * * * * * * * * * * * * * * 969 * 1908 * * 4 0 * * * * * * 2396 0 0 Y 5 * * * * 2017 * * * * * * * * * * * * * * 410 5 0 * * * * * * 2396 0 0 S 6 * * * * * * * * * * * * * * * 0 * * * * 6 0 * * * * * * 2396 0 0 L 7 * * * * * * * 1908 * 1089 * * * 1924 * * * * * * 7 0 * * * * * * 2396 0 0 D 8 * * 2165 1924 * * * * 2017 * * * * * * 1908 * * * * 8 0 * * * * * * 2396 0 0 T 9 1924 * * * * * * * * * * * * * * 961 2165 * * * 9 0 * * * * * * 2396 0 0 A 10 0 * * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 2396 0 0 I 11 * * * * * * * 447 * * * * * * * * * 1908 * * 11 0 * * * * * * 2396 0 0 F 12 * * * * 2165 * * * 1908 * * 1924 * * * 2017 * * * * 12 0 * * * * * * 2396 0 0 V 13 * * * * * * * * * 2017 * * * * * 1908 * 1040 * * 13 0 * * * * * * 2396 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 2396 0 0 E 15 * * 2017 2165 * * * * * * * * * 1908 * 1924 * * * * 15 0 * * * * * * 2396 0 0 T 16 * * 1908 * * * * * * * * 1924 * * * 2017 2165 * * * 16 447 * 1908 * * * * 2396 0 0 R 17 * * * * * * * * 1538 * * * * * 1591 * * * * 1627 17 609 * 1538 * * 0 * 1969 0 1000 D 18 * * 1687 1536 * * * * * * * * * * * 1536 * * * * 18 0 * * * * 0 * 1984 0 1000 Y 19 * * * * * * * * * * * * * * * * * * * 0 19 0 * * * * * * 2396 0 0 R 20 * * * * * * * * * 1908 * * 2017 * 2165 * * * * 1924 20 0 * * * * * * 2396 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 2396 0 0 S 22 * * * * * * * 1924 * * * * * * * 2165 * 961 * * 22 0 * * * * * * 2396 0 0 D 23 * * 1040 2017 1908 * * * * * * * * * * * * * * * 23 0 * * * * * * 2396 0 0 V 24 * * * * * * * * * * * * * * * 1924 2017 1031 * * 24 0 * * * * * * 2396 0 0 K 25 * * * 1908 * 969 * * 2165 * * * * * * * * * * * 25 0 * * * * * * 2396 0 0 E 26 * * * 441 * * * * * * * * * * * * * * * 1924 26 0 * * * * * * 2396 0 0 I 27 * * * * * * * 447 * * * * * * * * * 1908 * * 27 0 * * * * * * 2396 0 0 D 28 * * 1031 1924 * * * * * * * 2017 * * * * * * * * 28 0 * * * * * * 2396 0 0 S 29 * * * * * 916 * * * * * * * * * 1089 * * * * 29 410 2017 * 0 * * * 2396 1000 0 Y 30 * * * * 1924 * * * * * * * * * * * * * * 441 30 0 * * * * * * 2396 0 0 G 31 * * * * * 0 * * * * * * * * * * * * * * 31 0 * * * * * * 2396 0 0 D 32 * * 1040 * * * * * * * * * 1908 * * * * 2017 * * 32 0 * * * * * * 2396 0 0 V 33 * * * * * * * 1924 * * * * * 2017 * * * 1031 * * 33 0 * * * * * * 2396 0 0 E 34 * * * 1031 * * * * * 2017 * * * * * * * * * 1924 34 441 1924 * 0 * * * 2396 1000 0 X 35 1498 * * * * 1597 * * * * * 1664 * * * * * * * * 35 0 * * * * * * 2176 0 0 K 36 * * * 1924 * * * * 1031 * * * * * 2017 * * * * * 36 0 * * * * * * 2396 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 2396 0 0 K 38 * * * * * * * * 2165 * 2017 * * * 1924 * * 1908 * * 38 0 * * * * * * 2396 0 0 V 39 * * * * * * * * * * * * * * * * * 1031 * 969 39 0 * * * * * * 2396 0 0 A 40 410 * * * * 2017 * * * * * * * * * * * * * * 40 0 * * * * * * 2396 0 0 V 41 * * * * * * * 1924 * * * * * * * 1908 * 1089 * * 41 0 * * * * * * 2396 0 0 F 42 * * * * 447 * * * * * * * * * * * * * * 1908 42 0 * * * * * * 2396 0 0 E 43 * * 1924 2165 * * * * 2017 * * * * * * * * 1908 * * 43 0 * * * * * * 2396 0 0 T 44 * * * * * 1924 1908 * * * * 2017 * * * * 2165 * * * 44 0 * * * * * * 2396 0 0 E 45 * * 1908 2165 2017 * * * * * * * * * * * * 1924 * * 45 0 * * * * * * 2396 0 0 Y 46 * * 969 * * 1908 * * * * * * * * * * * * * 2165 46 0 * * * * * * 2396 0 0 G 47 * * * * * 447 * * 1908 * * * * * * * * * * * 47 0 * * * * * * 2396 0 0 P 48 * * * * * * * 1924 * * 2017 1908 2165 * * * * * * * 48 0 * * * * * * 2396 0 0 V 49 * * * * 969 * * * * * * * * * * * * 2165 * 1908 49 0 * * * * * * 2396 0 0 F 50 * * * * 2165 * * * * 1908 1924 * * * * * * * * 2017 50 0 * * * * * * 2396 0 0 L 51 * * * * 1908 * * * * 2165 * * * * * * * 969 * * 51 0 * * * * * * 2396 0 0 Y 52 * * * * 969 * * * * * * * * * * * * * * 1031 52 0 * * * * * * 2396 0 0 V 53 * * * * * 1908 * * 969 * * * * * * * * 2165 * * 53 0 * * * * * * 2396 0 0 Y 54 * * * * 1908 * * * * * * * * * * * * * * 447 54 0 * * * * * * 2396 0 0 K 55 * * 1924 2017 * * * * 1031 * * * * * * * * * * * 55 447 1908 * 1000 1000 * * 2396 1000 0 G 56 * * 364 * * 2165 * * * * * * * * * * * * * * 56 0 * * * * * * 2396 0 0 E 57 * * * 0 * * * * * * * * * * * * * * * * 57 0 * * * * * * 2396 0 0 E 58 * * * 1040 * * * * 2017 * * * * * * 1908 * * * * 58 410 2017 * 0 * * * 2396 1000 0 A 59 2165 * * * * * 1924 * * * * * 1908 * * * 2017 * * * 59 441 1924 * 2322 322 * * 2396 1000 0 K 60 * * * * * * * * 441 * * 1924 * * * * * * * * 60 0 * * * * * * 2396 0 0 K 61 * * * * * * * * 1040 * * 2017 * * * * * 1908 * * 61 0 * * * * * * 2396 0 0 I 62 * * 2017 * * * * 1040 * * * * * * * * * * * 1908 62 0 * * * * * * 2396 0 0 W 63 * * * * * * * * * * * * * * * * 1924 * 441 * 63 0 * * * * * * 2396 0 0 K 64 * * * * * * * * 410 * * 2017 * * * * * * * * 64 0 * * * * * * 2396 0 0 K 65 * * * * * * * * 410 * * * * * 2017 * * * * * 65 0 * * * * * * 2396 0 0 L 66 * * * * * * * 1908 * 1089 * * * * * * * * * 1924 66 410 * 2017 * * * * 2396 0 0 N 67 * * * * * * * * * * * 596 * * * * * 1564 * * 67 0 * * * * * 0 2028 0 1000 G 68 * * * * * 1706 * * 1564 * * 1493 * * * * * * * * 68 0 * * * * 0 * 2028 0 1000 R 69 * * * 1908 * * * 2017 * * * * 1924 * 2165 * * * * * 69 0 * * * * * * 2396 0 0 V 70 * * * * 1924 * * 1908 2017 * * * * * * * * 2165 * * 70 0 * * * * * * 2396 0 0 S 71 * * * * * 1908 * * 1924 * * * * * * 2165 2017 * * * 71 0 * * * * * * 2396 0 0 I 72 * * * * 2017 * * 1031 * 1924 * * * * * * * * * * 72 447 1908 * 1585 585 * * 2396 1000 0 R 73 * * * * * 2017 * * 1924 * * * * * 1031 * * * * * 73 0 * * * * * * 2396 0 0 S 74 * * * * * * * * * * * * * * * 1089 1908 * * 1924 74 0 * * * * * * 2396 0 0 V 75 * * * * 1924 * * * * * * * * * * * * 1089 * 1908 75 441 1924 * 0 * * * 2396 1000 0 L 76 * * * * 1908 * * * * 1089 * * * * * * * 1924 * * 76 0 * * * * * * 2396 0 0 D 77 * * 1031 * * * * * 2017 * * 1924 * * * * * * * * 77 0 * * * * * * 2396 0 0 L 78 * * * * * * * 2017 * 1031 1924 * * * * * * * * * 78 410 * 2017 * * * * 2396 0 0 P 79 * * * * * 1493 * * * 1564 * * 1706 * * * * * * * 79 0 * * * * 0 * 2028 0 1000 N 80 * * 1924 * * * * * * * * 441 * * * * * * * * 80 0 * * * * * * 2396 0 0 X 81 * * * * * * * * * * * * * * * 1498 * * * 630 81 0 * * * * * * 2176 0 0 G 82 * * * * 2017 410 * * * * * * * * * * * * * * 82 0 * * * * * * 2396 0 0 K 83 * * * * * * * * 1089 1908 * * * * * * * 1924 * * 83 0 * * * * * * 2396 0 0 F 84 * * * * 447 * * * * * * * * * * * * * * 1908 84 0 * * * * * * 2396 0 0 S 85 * * * * * * * * * * * * * * * 441 1924 * * * 85 0 * * * * * * 2396 0 0 T 86 * * * * * * * * * 969 * * * * * 1908 2165 * * * 86 0 * * * * * * 2396 0 0 V 87 * * * * 2017 * * * 1908 * * * * * 1924 * * 2165 * * 87 0 * * * * * * 2396 0 0 S 88 * * 2017 * * * * * 1908 1924 * * * * * 2165 * * * * 88 0 * * * * * * 2396 0 0 N 89 * * 1908 1924 * * * * * * * 2165 * * 2017 * * * * * 89 0 * * * * * * 2396 0 0 G 90 * * * * * 441 * * * * * 1924 * * * * * * * * 90 410 2017 * 3000 193 * * 2396 1000 0 K 91 * * * * * * * * 1031 2017 * * * * * * 1924 * * * 91 0 * * * * * * 2396 0 0 K 92 * * 1924 * * * * * 2165 * * 2017 * * * * * * * 1908 92 0 * * * * * * 2396 0 0 I 93 * * * * * * * 1031 * 1924 * * * * * * * 2017 * * 93 0 * * * * * * 2396 0 0 V 94 * * * * * * * 2017 * * * * * * * * * 1031 * 1924 94 0 * * * * * * 2396 0 0 A 95 2165 * * * * * * * * * * * * * * * 2017 916 * * 95 0 * * * * * * 2396 0 0 W 96 * * * * * * * * * * * * * * * * * * 0 * 96 0 * * * * * * 2396 0 0 W 97 * * * * * * * * * * * * * * * * * * 441 1924 97 0 * * * * * * 2396 0 0 R 98 * * * * * * * * 364 * * * * * 2165 * * * * * 98 0 * * * * * * 2396 0 0 K 99 * * 916 * * 2017 * * 2165 * * * * * * * * * * * 99 0 * * * * * * 2396 0 0 N 100 * * * * * * * * * * * 447 * * * * * 1908 * * 100 0 * * * * * * 2396 0 0 W 101 * * * * * * * * * * * * * * * * * * 0 * 101 0 * * * * * * 2396 0 0 L 102 * * * * * * * * * 447 1908 * * * * * * * * * 102 0 * * * * * * 2396 0 0 F 103 * * * * 441 * * 1924 * * * * * * * * * * * * 103 0 * * * * * * 2396 0 0 I 104 * * * * * * * 1031 * * * * * * * * * 969 * * 104 0 * * * * * * 2396 0 0 V 105 * * * * * * * 969 * * * * * * * * * 1031 * * 105 0 * * * * * * 2396 0 0 E 106 * * * 1031 * * * * * * * * * * * 1924 2017 * * * 106 0 * * * * * * 2396 0 0 G 107 * * * * * 447 * * * * * * * * * 1908 * * * * 107 441 * 1924 * * * * 2396 0 0 K 108 * * * * * * * * 1687 * * 1536 * * * 1536 * * * * 108 0 * * * * 0 * 1984 0 1000 N 109 * * 1924 * * * * * * * * 1089 * * * 1908 * * * * 109 0 * * * * * * 2396 0 0 G 110 * * * * * 2165 * * 1924 * * 1908 * * * 2017 * * * * 110 410 * 2017 * * * * 2396 0 0 V 111 1564 * * * * * * 1493 * * * * * * * * * 1706 * * 111 0 * * * * 0 * 2028 0 1000 E 112 * * 1924 1031 * * * * 2017 * * * * * * * * * * * 112 0 * * * * * * 2396 0 0 E 113 * * 1908 1089 * * * * * * * 1924 * * * * * * * * 113 0 * * * * * * 2396 0 0 F 114 * * * * 0 * * * * * * * * * * * * * * * 114 0 * * * * * * 2396 0 0 V 115 1908 * * * 2017 * * * * * * * * * * * * 1040 * * 115 0 * * * * * * 2396 0 0 K 116 * * * 2017 * * * * 1040 * * 1908 * * * * * * * * 116 0 * * * * * * 2396 0 0 H 117 * * 1924 * * * 2165 * * * * * * * * * * * * 961 117 0 * * * * * * 2396 0 0 V 118 * * * * * * * 2017 * * * * * * * * * 410 * * 118 0 * * * * * * 2396 0 0 Y 119 * * * * * * * * * * * 582 * * * * * * * 1591 119 0 * * * * * * 1969 0 0 R 120 * * * 1538 * * * * 1627 * * * * * 1591 * * * * * 120 0 * * * * * * 1969 0 0 V 121 * * * * * * * 1538 * * * * * * * * * 609 * * 121 0 * * * * * * 1969 0 0 Y 122 * * * * * * * * * * * * * * * * * * * 0 122 0 * * * * * * 1969 0 0 E 123 * * * 1011 * * * * 989 * * * * * * * * * * * 123 0 * * * * * * 1570 0 0 E 124 * * * 1011 * * * * * * * * * * * * 989 * * * 124 0 * * * * * * 1570 0 0 X 125 * * * * * * * 0 * * * * * * * * * * * * 125 0 * * * * * * 1000 0 0 K 126 * * * * * * * * 0 * * * * * * * * * * * 126 0 * * * * * * 1570 0 0 Q 127 * * * * * * * * * * * * * 0 * * * * * * 127 0 * * 0 * * * 1000 0 0 //