HHsearch 1.5 NAME d1vkeb_ FAM FILE d1vkeb_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1vkeb_.a3m DATE Tue Mar 9 00:26:11 2010 LENG 101 match states, 101 columns in multiple alignment FILT 110 out of 564 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.3 EVD 0.3884 -2.2728 SEQ >ss_dssp CCHHHHHHHHHHHHTTSCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHTTCCCC C >sa_dssp EDEEDEDEEEEDDCECEEEEDDCCCCACDBACDBACEDCCEDACDBABCABDDEADDEDADEBBEEACEECDEDADDBCDDACDCAEEBCDCDEDEDECE E >ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC C >ss_conf 9346789999999885179998999999999999985998799999999997699999999999999996016999999999999999899641788666 9 >Consensus xxxxxkafxxlxxxvxxxgxLxxkxreLixlaxxxaxgxxxxlxxHxxxAlxxGxtxeEIxExixxaxxxxGxpxxxxaxxalxxxxexxexxxxgxxxx x >d1vkeb_ GTLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDIALVVGGSIVIPHLRRAVGFLEELREMEKNGETIS L >UniRef50_A7I479(177-261:261) Carboxymuconolactone decarboxylase n=2 Tax=Genera incertae sedis RepID=A7I479_METB6 E=0.0002 s/c=0.55 id=19% cov=80% --------------IYARGILPIRNRQVATIAALAAKGtAPSQLRFHIGGGLRAGLSEAEIVEIMLLVSIYAGFPAALNGILATRdVAEALKDEQR---- --- >UniRef50_UPI0001C41FF1(27-106:106) carboxymuconolactone decarboxylase family protein PcaC1 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41FF1 E=3e-07 s/c=0.70 id=19% cov=77% ---------NLDKNIWNANSLDYRTQKLIAIAISATNpESSSFLKQLSKAKKELDISRDEVMDVLKVVLLTSG---MMPFNKALEVVNKL---------- -- >UniRef50_O29899(49-126:126) Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus RepID=O29899_ARCFU E=7e-07 s/c=0.70 id=22% cov=78% --------------VMSLESIPEKYKHLIMIAVAAAVGSKMCTEVFTKIAKRRGVSEREIGEAILVARFALASTIFATVTPALEWLEGGDEE-------- - >UniRef50_A3JUL6(48-134:135) Possible carboxymuconolactone decarboxylase family protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JUL6_9RHOB E=3e-09 s/c=0.72 id=19% cov=84% ---------TMFGKTLNKDGLDAKTRLLTLLSAQVAAQSegkEPQIKATVRNALDAEVHEQEITEVIVQAAVYAGVPSMTKAMEIAKAVFEDRKAD---- ---- >UniRef50_Q5QZD3(105-167:175) Probable alkyl hydroperoxide reductase D, carboxymuconolactone decarboxylase family enzyme n=2 Tax=Idiomarina RepID=Q5QZD3_IDILO E=0.0008 s/c=0.71 id=22% cov=41% -------------NAMANPGVDKADFELFSLAVSALNGCGMCIDSHVQTLLKH----------------------------------------------- - >UniRef50_A7HB01(23-107:107) Carboxymuconolactone decarboxylase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HB01_ANADF E=3e-08 s/c=0.70 id=17% cov=85% ------AFEELGRRLHESGPLSERERRLVKLGIAVGLGTEGGVHSAVRFATAGGCSREDLAHVVRLAITTIGWPS---ALAAMSWVDDLAGEEE------ - >UniRef50_A8LEF0(57-138:193) Carboxymuconolactone decarboxylase n=1 Tax=Frankia sp. EAN1pec RepID=A8LEF0_FRASN E=2e-05 s/c=0.61 id=22% cov=78% ------AFFHFNGHVLFGSTLTARQVEILALRVAARRQFTYLWAHHLFAAREAGLTQQEIGQIVF-------GPAAPFLdpldRALLCAVDELIE----- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1643 0 0 T 2 * * * * * * 1000 * * * * * * * * * 1000 * * * 2 0 * * * * * * 1643 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1643 0 0 N 4 * * * * * * * * * * * 1000 * * * * 1000 * * * 4 0 * * * * * * 1643 0 0 T 5 * * * * * * * 1937 * * * * * * * 2052 3105 1390 * * 5 0 * * * * * * 3456 0 0 K 6 * * * * * * * * 595 * * 4119 * * 1833 * * * * * 6 0 * * * * * * 5018 0 0 R 7 730 * 4840 * * 3834 4915 * 5345 5098 5404 5217 * * 3889 3524 * * * * 7 0 * * * * * * 5775 0 0 F 8 * * * * 568 * * 5161 * * 5029 * * * * * * * 4861 2106 8 0 * * * * * * 6063 0 0 F 9 * * * 5174 3043 3599 * 3622 5897 1954 2978 4273 * * 4632 5124 * 3364 4601 5247 9 34 5427 * 3907 100 * * 6184 1000 0 N 10 2464 * 3516 3202 * 3275 4481 * * * * 2221 4781 3274 5683 4757 4523 5620 * * 10 33 5446 * 1000 1000 * * 6609 1000 0 L 11 * * * * 1710 * * 5612 5028 1252 2808 * * * * * * * * 3634 11 0 * * * * * * 6662 0 0 D 12 3900 5665 2593 4986 4054 3373 4031 * 5817 5957 4392 4145 5655 5015 4045 3308 5132 4807 5862 3914 12 0 * * * * * * 6665 0 0 S 13 4014 * 3864 3321 * 1942 4441 * 3756 6286 4852 5448 * 3273 3517 3389 6084 5813 * * 13 0 * * * * * * 6594 0 0 A 14 1591 * * 3945 * * 4941 4609 3888 5024 5201 2838 * 4080 4148 4200 6029 4034 * 5813 14 22 * 6023 * * * * 6594 0 0 V 15 2561 4665 * * * 6824 * 1924 * 3736 6024 * 4579 5388 * 5357 4301 1799 * * 15 42 6166 6093 1585 585 0 * 6766 1000 1000 Y 16 4757 * 6298 6216 3345 6243 5859 5891 5484 2221 2836 * * * * 6853 5917 4861 2743 2283 16 13 6806 * 1000 1000 0 * 6801 1000 1000 R 17 2518 * 4098 3370 6189 3394 6403 * 3640 5388 * 3463 5131 4223 3930 2983 4512 5919 * 5618 17 45 5486 6843 0 * * * 6865 1620 0 P 18 4385 * 2124 2583 5840 5380 4906 * 4288 6233 * 3806 3621 4807 3267 3533 4730 * * * 18 34 5417 * 603 1549 * 0 6936 1752 1000 G 19 4519 * 3127 4722 * 969 * * 4541 * * 3584 3864 * * 4159 6048 6361 * 6076 19 32 6076 7200 2000 415 * 0 6914 1000 1000 K 20 1739 * 5410 3813 * 3049 4075 5898 4221 * * * 4828 6628 5360 3278 3189 3955 * 6898 20 32 5503 * 0 * 982 1018 6909 1678 1629 L 21 * * * 6501 5954 * * 2837 * 410 6858 * * * * * * 3800 * * 21 0 * * * * * 0 6857 0 1000 D 22 * * 1555 4580 * 4089 * * 6461 * * 4527 2485 * * 2029 3630 * * * 22 0 * * * * 0 * 6862 0 1000 V 23 2596 * 3791 3294 * * * 5910 3494 3211 5057 4740 2495 5729 3611 4946 5227 6197 * 5124 23 0 * * * * * * 6855 0 0 K 24 5758 * 6441 5796 * 6641 5917 5167 1000 5171 * * 6340 4596 1797 * 6863 5671 * * 24 0 * * * * * * 6855 0 0 T 25 7204 * 3467 2540 * * 5864 4995 * 2719 5822 4630 * 4029 6876 6818 1669 5219 * 4254 25 0 * * * * * * 6855 0 0 K 26 6067 6603 * * 6255 * * * 1420 5214 * * * 4135 1245 5452 7293 4752 * 5962 26 0 * * * * * * 6855 0 0 E 27 3718 6724 6614 1183 6566 6341 4207 5707 4265 4643 5170 * * 4286 3546 3642 6958 7159 5974 * 27 0 * * * * * * 6864 0 0 L 28 4820 * * * 3853 * * 3949 5627 631 2997 * * * 5515 * * 5815 * * 28 0 * * * * * * 6864 0 0 M 29 3515 * * * * * * 1053 * 3514 2955 * * 6701 * 6315 6405 2581 * 6262 29 16 6481 * 1000 1000 * * 6864 1000 0 G 30 1833 * * * 6251 4974 6589 4071 5632 4338 4673 4769 5630 6724 5819 3242 2320 3855 * 4775 30 15 6642 * 0 * * * 6864 1000 0 L 31 6481 5648 * * 4554 * * 2089 * 1101 4851 * * * * * 5508 2570 * * 31 0 * * * * * * 6864 0 0 V 32 956 4909 * * * 2790 * 6251 * 5290 6468 * 6736 * 4386 3625 5025 3509 * * 32 11 6999 * 1000 1000 * * 6864 1000 0 A 33 2225 4328 * * 4921 5853 * 2637 * 3937 4246 * * 6589 * 4176 3467 2134 6315 6536 33 26 7103 6604 1000 1000 * * 6864 1000 0 S 34 2098 7497 3712 * 5619 5305 * 4648 6700 2282 6289 * * 5591 * 1867 * 3882 * 6919 34 0 * * * * 0 * 6854 0 1000 T 35 1919 5279 * 5515 7001 5427 4826 3157 5184 3464 4369 * 6999 4567 * 4578 3767 2628 * 5966 35 15 6614 * 1000 1000 * * 6864 1000 0 V 36 1244 * * * 5404 4104 * 4815 * 3937 * * * 6704 5505 3657 2619 3273 * 5781 36 12 6912 * 1000 1000 * * 6864 1000 0 L 37 3140 * 5562 7059 * 5595 4895 4822 5378 2441 7361 2499 * 3601 3929 3165 3856 4816 * 6265 37 89 4057 * 0 * * * 6864 3034 0 R 38 5089 * 4111 4933 * 1224 5564 * 4978 6614 4855 3466 6734 3327 3609 5423 5534 * * 5158 38 57 5052 6883 0 * * * 6864 2351 0 C 39 3203 1386 4569 4003 5291 6478 6575 6454 6515 5564 * 3590 * 4954 5068 3338 4536 6715 * 5876 39 38 5272 * 921 1083 0 * 6860 2012 1000 D 40 3873 * 3389 1968 5608 3864 6069 6481 5120 5742 5551 5158 3415 4314 4438 4164 4222 4440 * 5438 40 0 * * * * * * 6864 0 0 D 41 4393 * 2889 4405 5581 4284 4168 5573 5292 5212 5680 4097 2997 * 5765 4056 4869 6841 6931 2083 41 15 6589 * 1000 1000 * * 6864 1000 0 C 42 3746 1384 * 3037 6606 2971 * * 5797 4473 * 6550 4637 3094 * 5716 6782 5409 * * 42 0 * * * * * * 6864 0 0 I 43 4005 6265 * * 3833 * * 2199 * 1550 5178 * * 5102 * * 4719 2718 5121 5659 43 0 * * * * * * 6864 0 0 R 44 2736 * 3616 4267 6708 5481 5216 5226 2184 4999 6652 * 4651 5942 2834 3465 4107 5826 * 7132 44 0 * * * * * * 6864 0 0 Y 45 2755 * 5843 4780 4012 5113 3199 4211 4625 4000 5198 4632 7132 4221 5029 3204 4473 4052 6248 4173 45 15 6599 * 0 * * * 6864 1000 0 H 46 5133 * * 5892 6722 * 661 5113 * 4829 4829 5939 * 3624 * 6584 5067 * 6342 3981 46 0 * * * * * * 6864 0 0 L 47 2874 6523 * 6640 5074 5706 * 3013 * 2885 5267 * * 6470 5603 3279 2682 2199 * * 47 0 * * * * * * 6864 0 0 V 48 3139 * 5614 3860 5786 5330 6606 7185 2851 6882 7162 3320 4207 3791 2118 5217 5916 4703 * 4498 48 0 * * * * * * 6864 0 0 R 49 1889 * 6533 5801 6570 3029 5921 4082 3352 4038 4982 3719 6708 4144 4931 5854 3884 4557 * * 49 0 * * * * * * 6864 0 0 C 50 685 4658 * * 5653 3107 * * 6608 3372 * 4533 * * * 5354 6667 6640 * 6983 50 13 6821 * 0 * * * 6864 1000 0 V 51 6448 * * 5628 5610 6650 5839 4122 2544 1381 4662 * * * 2720 5848 6570 3651 * 6814 51 19 6293 * 2000 415 * * 6864 1000 0 Q 52 3327 * 3830 3087 * 5527 5370 5848 2595 * 4787 2379 * 5332 2742 4752 4802 6992 * * 52 32 5529 * 0 * * * 6864 1554 0 E 53 2204 6992 5787 4442 5637 6570 4007 5565 5291 2343 4020 3654 * 4997 6722 4074 5608 3682 * 4844 53 16 6464 * 0 * * * 6864 1000 0 G 54 * * 4648 5598 * 171 * * 6348 * * 5266 * * 6293 * * * * * 54 14 6730 * 0 * * * 6864 1000 0 A 55 1818 3874 * 5627 5095 5167 * 3005 * 2343 5283 4945 * 6540 * * * 2640 5660 * 55 0 * * * * * * 6860 0 0 S 56 5247 * 3788 5597 * 5264 6399 5610 6726 6719 * * 5114 * 6957 1638 1168 * * * 56 0 * * * * * * 6860 0 0 D 57 4138 * 3266 2570 6466 6787 6580 4421 3252 * 4958 6289 3171 4226 2499 5610 * 3822 6529 * 57 0 * * * * * * 6940 0 0 E 58 2804 * 2648 1351 * 6798 5094 7001 4095 6852 6319 5249 * 4339 5631 4403 5793 5763 * * 58 0 * * * * * * 6940 0 0 E 59 4529 * 3683 629 6578 * * 6628 4571 * 6580 6735 5638 3363 5689 6252 * * * * 59 0 * * * * * * 6940 0 0 I 60 * * * * 4950 * * 1103 * 1735 3714 * * * * * 5971 3192 * * 60 54 5723 5836 3807 107 * * 6940 1000 0 F 61 2870 7424 6422 4611 4012 4042 * 4368 3989 2694 3731 4454 * 4003 3655 5143 4220 4083 * 6328 61 30 * 5598 * * 907 1100 6909 0 1641 E 62 4007 * 3451 607 6595 4572 4830 * 6636 6720 * 6399 * 5719 6219 5030 6963 * * * 62 42 * 5107 * * 1442 662 6896 0 2160 A 63 1490 * * * * 5695 * 3170 * 3727 4859 * * * 4491 6648 3072 2118 * * 63 0 * * * * * 0 6857 0 2232 L 64 4444 4972 * 5337 5155 5521 * 1780 * 1992 4348 * * * * * * 2048 * 6160 64 0 * * * * * 0 6857 0 2232 D 65 2472 * 5894 3647 4383 6819 4627 6395 3581 2816 4452 5366 * 5410 3329 4386 4866 4320 * 3981 65 17 * 6404 * * 1629 564 6809 0 2232 I 66 4779 * * * 6567 * 3852 2224 * 3190 3899 * * 2294 * * 4909 1966 * * 66 0 * * * * * 0 6863 0 2143 A 67 1200 3656 * * 5122 3891 * 3795 * 4178 5743 5393 * * * 4441 4661 2900 * * 67 0 * * * * 2149 369 6739 0 2143 L 68 1636 * 6744 * 4325 4334 * 3683 5243 3043 4524 * * 4743 6217 3165 4945 3871 * 4741 68 0 * * * * 682 1408 6810 0 1981 V 69 2623 * * 6609 4162 * 4405 2436 6609 3303 5360 4788 3509 5088 6283 3591 4369 4005 6318 5005 69 0 * * * * * 0 6909 0 1000 V 70 4564 * * * 3496 6487 6097 4501 * 2954 3159 5962 * 6415 4574 6365 3484 2517 * 2236 70 19 * 6280 * * * 0 6909 0 1000 G 71 1983 4194 6129 * * 2065 5210 4198 4057 5166 * 5504 * * 3566 3259 * 4911 * 5285 71 14 * 6647 * * 983 1017 6880 0 1650 G 72 2956 * * 5388 * 478 * * * * 6776 4704 * 5875 5123 6002 5624 * * * 72 91 6231 4391 0 * 1076 928 6891 1000 1733 S 73 * 5779 5862 * 2885 1840 * 4129 5451 4196 4323 * * * * 3210 4684 3019 3966 5006 73 18 * 6366 * * * 0 6945 0 2708 I 74 3242 * * 5858 * 4436 5252 3343 * * 6185 4373 1049 * * 3694 3937 5773 * * 74 56 6282 5298 0 * 2413 300 6936 1000 2990 V 75 1782 6230 * * * 4020 * 4543 3803 4744 6016 6384 * 4622 3672 2920 3600 3044 * * 75 43 * 5092 * * 896 1112 6905 0 3205 I 76 2500 * 4046 4966 3722 6278 * 3170 * 2558 3262 6015 5497 * 6088 5044 4391 4354 5152 4332 76 69 5097 5831 1369 706 2341 317 6883 1680 2810 P 77 2699 * * * * 4484 5849 5248 5002 3052 3211 2980 4610 * * 2317 4666 3722 * 6133 77 35 * 5381 * * 1640 558 6860 0 3086 H 78 6232 * 4678 3721 5918 * 2146 5203 3084 5187 5968 3409 5245 5371 4741 3619 4080 4621 5771 4079 78 55 6321 5314 0 * 1463 650 6884 1000 3189 L 79 1129 5962 6070 * 4306 2244 * * * 2863 * * * * 6264 3843 6100 6004 * * 79 53 4804 * 1122 888 1644 556 6905 1530 3132 R 80 3274 * 5319 5140 4333 * * 4051 4129 3132 3647 3308 5010 * 2692 6673 3294 3580 * * 80 0 * * * * 1046 956 6901 0 2599 R 81 3662 * * 4133 3855 4271 3763 6268 3905 4823 6605 2975 4149 3183 2857 5164 3982 5559 * * 81 45 5014 * 0 * 0 * 6893 1484 1718 A 82 773 5529 * * * 4860 * 3607 * 3710 6044 * * 6109 * 3829 4672 4031 * * 82 55 * 4740 * * * * 6884 0 0 V 83 3555 * 5354 5106 4771 * * 2975 5041 1280 3665 * * 5917 * * 5309 3282 * 4957 83 64 6313 5015 0 * * 0 6785 1000 1885 G 84 4310 5621 3569 2132 6186 5113 * 6169 2589 * 5644 3982 * 4886 2909 3898 4641 4769 * * 84 39 6221 6267 0 * 837 1184 6678 1000 2823 F 85 2476 5003 4504 5923 3416 4728 5835 4583 4361 2854 5629 6567 * * 4969 4796 5617 2535 4743 5511 85 0 * * * * 1613 571 6729 0 2039 L 86 3460 * * * 3093 * * 3673 * 1726 4273 * * * * 5994 5799 2142 4770 3997 86 21 * 6137 * * 932 1071 6696 0 1635 E 87 5668 * 1641 1828 4641 * * * 3755 * * 4328 * 4352 4224 4137 * 4546 6368 * 87 0 * * * * * 0 6675 0 1591 E 88 3570 * 3417 893 * 5485 5453 6199 3775 4642 * 5898 6116 6006 * 4699 6218 6256 * * 88 0 * * * * 0 * 6570 0 1591 L 89 5214 * 4545 * 2230 4006 * 4214 5429 1516 3431 * * * * * 6037 3058 * * 89 36 * 5340 * * * * 6539 0 0 R 90 4466 * 2974 3129 4243 3516 * 3748 2580 5344 * 5627 5233 * 3408 5773 3229 * * 4615 90 0 * * * * * 0 6382 0 1000 E 91 5516 * 3897 1062 * 5267 5168 * 2155 * * 5900 5243 5184 4289 4974 * * * * 91 0 * * * * 0 * 6294 0 1000 M 92 2209 * * 1668 * 4606 * 3957 5029 3952 4036 * * * 4080 4807 * 3966 * 4364 92 0 * * * * * * 6037 0 0 E 93 3058 * 3198 1249 4161 * 4678 * * * * 4659 * 3248 4588 * 4933 * * 4789 93 79 * 4231 * * * * 5831 0 0 K 94 2555 * 3885 2903 * 3467 4444 * 3062 3758 * 4417 * 3040 3602 4393 * * * * 94 0 * * * * * 0 5668 0 1000 N 95 4421 * 1375 * * * 4172 * * * * 2114 3219 4184 * * 4052 4096 * * 95 0 * * * * 0 * 5484 0 1000 G 96 * * 4014 * * 432 * * * * * * 3733 * * * 3883 4217 * * 96 0 * * * * * * 4992 0 0 E 97 * * 3674 929 * * * * 3660 * * 3867 3631 2573 * * * * * * 97 0 * * * * * * 4738 0 0 T 98 2444 * 3394 * * * * 3120 * * * * * * * 1718 1727 * * * 98 0 * * * * * * 4294 0 0 I 99 2459 * * * * * * 2567 * * * * * * * * * 623 * * 99 0 * * * * * * 3433 0 0 S 100 * * * 1594 * * * * * * * * * * * 580 * * * * 100 0 * * * * * * 2235 0 0 L 101 * * * * * * * 1030 * 971 * * * * * * * * * * 101 0 * * 0 * * * 1661 0 0 //