HHsearch 1.5 NAME d1v5oa_ FAM FILE d1v5oa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1v5oa_.a3m DATE Mon Mar 8 23:53:53 2010 LENG 102 match states, 102 columns in multiple alignment FILT 109 out of 592 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.5 EVD 0.4055 -0.7002 SEQ >ss_dssp CCCCSCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCCCCSSCCCCCCCCS CC >sa_dssp EEEEEEDBEACACADDCEEEDDEBDBEBDDECDADDABDDACEDBDACCECABACBEEEDBEDDECCADECDAEEECDACACCDEEEEEEEEEEEEEEEE EE >ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC CC >ss_conf 9877762699999975348986899996777518999999998738998899998577100012365788296788789999816888889987899988 99 >Consensus xxxxxxxmxitvxxxxkxlsxxxxxlxVxpxxtVxxlKxxIxxxxgipxxxqrLixxGxxLxddxxtLxxygIxxgxxIxLxxkxxxxxxxpxxxpxxpx xg >d1v5oa_ GSSGSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSGPS SG >UniRef50_B9WA56(1-79:318) DNA damage-inducible v-SNARE binding protein, putative n=4 Tax=Saccharomycetales RepID=B9WA56_CANDC E=1e-07 s/c=0.73 id=22% cov=72% -----------------DHSGDIISVDVPESLSLEDFKAYLSAETGVDAGVQSLRFNGQELVENK-PLSEFQIHDNDLLQMSKKQEPDER---------- -- >UniRef50_Q753F6(1-93:413) AFR358Wp n=2 Tax=Saccharomycetaceae RepID=Q753F6_ASHGO E=1e-07 s/c=0.62 id=20% cov=91% -------MNITIHF--KDFKKERLPLQLSPSATIAEAKQMLARAKQCDESQLKMIFSG-KVLQDGNTLEGCKLKDGDqVIFMISKKKAETRVSEPEPASE PSG >UniRef50_A2FMC3(1-86:792) Sec23/Sec24 trunk domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2FMC3_TRIVA E=1e-05 s/c=0.59 id=23% cov=30% -------------------------------------------------------------------ISAYNIPDGGIVTINRNKNMNYAAAAPTPN--- -- >UniRef50_C9ZRD9(1-93:356) UV excision repair RAD23 protein, putative n=2 Tax=Trypanosoma brucei RepID=C9ZRD9_TRYBG E=7e-05 s/c=0.52 id=20% cov=73% --------------------------EVSPDTKVEDIKKFLESE--YTPQSLRLCYNNRVLEDP-MTMEQLGIGEDTVIVYVGKKQSVQQLASksggcAS PSAPAEG >UniRef50_UPI000180B7DF(23-108:790) PREDICTED: similar to midnolin n=1 Tax=Ciona intestinalis RepID=UPI000180B7DF E=0.0001 s/c=0.55 id=21% cov=27% -------------------------------------------------------------------LADQQIQDGNKITLLPSVESGFSSTVQ------ -- >UniRef50_D1HIX1(13-115:573) Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1HIX1_VITVI E=2e-09 s/c=0.62 id=20% cov=89% ----------TVEIKIKTLDSQTYTLRVDKCMPVPALKEQIASVTGVLSEQQRLICRGR-VLKDDQLLSAYHVEDGHTLHLVVRQPFPPSSeslPDNSAT DPAS- >UniRef50_A8Q5M0(20-113:354) UV excision repair protein Rad23 containing protein n=1 Tax=Brugia malayi RepID=A8Q5M0_BRUMA E=8e-07 s/c=0.58 id=16% cov=83% ----------------KTIAQVSFEIELDPHLTIGEVKAKIAEEKGevEYPTECQKLIYNGKVLDDAQTVEEVMIDPSKFVVVMIARKKPIGAPVESTPQ PS-- >UniRef50_A2F733(160-232:233) Ubiquitin family protein n=1 Tax=Trichomonas vaginalis RepID=A2F733_TRIVA E=5e-05 s/c=0.67 id=14% cov=57% ----------------KDLTGKSITIHLYAHSTIRELQLVVCQRLNISFNECRLILNGIPLSINK-TMDDYGIK-------------------------- -- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1716 0 0 S 2 * * * * * * * * * * * * * 1976 * 423 * * * * 2 0 * * * * * * 2783 0 0 S 3 * * 2286 * * * * * * * * * * * * 795 2193 * * * 3 0 * * * * * * 3112 0 0 G 4 1214 * * * * 2738 * * * * * * * * * 1255 * * * * 4 0 * * * * * * 3692 0 0 S 5 2935 * * * * 2741 * * 2584 * * * * 2895 * 1257 * * * * 5 0 * * * * * * 3692 0 0 S 6 3117 * * 1986 * * * * * * * * * * 2794 1035 * * * * 6 0 * * * * * * 3914 0 0 G 7 3028 * 3140 * * 1006 * * 2794 * * * * * * * 3037 * * * 7 0 * * * * * * 3914 0 0 M 8 * * * * * * * 4370 * 3899 604 4385 * * * * 4202 4171 * 3857 8 0 * * * * * * 5135 0 0 L 9 * * 4233 * 4318 * * 2710 4400 2305 4094 3051 * 3396 4302 4116 3164 * * * 9 0 * * * * * * 5273 0 0 I 10 * * * * * * * 891 * 2321 4425 * * * * * * 2223 * * 10 0 * * * * * * 5395 0 0 T 11 * * * * 4255 4489 * * 3342 * * 4539 * 4601 * 2260 967 * * * 11 0 * * * * * * 5472 0 0 V 12 * * * * * * * 2115 * 2795 4198 * * * * * * 809 * * 12 466 * 1857 * * * * 5472 0 0 Y 13 * 4021 * 2880 2366 * 3741 * * * * * * * * 4024 2399 * * 1822 13 0 * * * * * 0 4934 0 3324 C 14 * 2892 * * 2749 * * 1878 * 2397 * * * * * * * 2468 * 3760 14 311 4027 2914 0 * * 0 4934 1000 3324 V 15 3830 * * 2638 * 3594 * * 3837 * * 3588 * * * 3858 2070 2146 * * 15 109 * 3785 * * 2892 209 4670 0 3651 R 16 3788 * 2515 * * * 3887 3830 * 3777 * 3554 2673 * 3793 2774 * 3617 * * 16 116 * 3691 * * 206 2910 4675 0 3621 R 17 * * * 4058 * * * * 890 * * 4449 * * 1775 5431 4675 * * * 17 38 * 5252 * * 0 * 6333 0 1736 D 18 * * 1724 * * 4449 * * * * 5254 3286 4316 4350 5069 5059 1459 * * * 18 81 * 4200 * * 0 * 6422 0 1000 L 19 4355 * 5653 * 4412 5055 5396 2918 5490 986 5113 * 5672 5783 * 4382 * 4713 * 5763 19 26 * 5783 * * * 0 6469 0 1761 T 20 4688 * 4655 5686 * 5968 4546 * 3965 * * 3362 5177 3596 5159 1639 2168 * * * 20 26 5794 * 0 * 1474 644 6644 1000 2199 E 21 * * 4326 2958 * 1217 * * 3536 * * 3469 5626 2955 5528 5797 5265 * * * 21 26 * 5829 * * 1000 1000 6722 0 1592 V 22 4076 * 5541 3255 * 4402 6271 5880 2640 4795 5692 5186 * 3106 4005 4189 2412 3779 * * 22 0 * * * * 963 1038 6725 0 1681 T 23 5051 * 6176 3881 * * 5886 3732 3719 * 6093 5920 4287 4804 4889 2368 1773 3613 * * 23 0 * * * * * 0 6860 0 1000 F 24 5841 5729 * 5845 1591 * 5343 2971 5912 2551 6184 * * * * * 3896 5440 6153 2671 24 14 6689 * 0 * * 0 6891 1000 1000 S 25 3970 6155 3820 2839 5827 5090 5676 6896 3971 * * 6449 3867 6430 6418 2719 2046 4349 6109 6371 25 10 * 7151 * * 0 * 6991 0 1000 L 26 * 6703 * 6310 5343 * * 2125 * 1215 6466 * * 6318 6321 * * 2224 * 4545 26 38 5275 * 1499 630 * 0 7101 1721 1000 Q 27 3866 * 2723 1848 6339 5478 4654 * 4736 6747 * 3714 6158 3641 3624 3929 3973 * * * 27 0 * * * * 0 * 7065 0 1000 V 28 4761 6017 * * 6438 * * 2611 * 2852 6273 * * * * * 5224 786 * 6144 28 0 * * * * * * 7071 0 0 N 29 3939 * 2316 3679 6730 4958 6527 * 4706 6555 5680 2980 4367 5249 5514 2038 4775 * 5775 6223 29 12 6869 * 0 * * * 7071 1000 0 P 30 3007 * 4720 3370 * 4926 * * 4778 5454 7133 5288 1138 5624 5766 3427 * 6416 * 5784 30 24 5899 * 0 * * * 7109 1000 0 D 31 5310 5510 1736 3029 5784 5053 4722 * 4906 6592 5877 2902 * 4991 5946 3146 3691 * * 6455 31 0 * * * * * * 7109 0 0 F 32 2921 6373 4362 2806 5068 * * 3957 6821 3460 3365 5342 * 5939 * 2800 2959 * 4313 6660 32 0 * * * * * * 7109 0 0 E 33 5003 * 4091 4044 6147 * * 7008 4374 4986 * 6821 4898 * 6365 2871 878 * * 6299 33 0 * * * * * * 7109 0 0 L 34 6593 * * * 6290 6722 * 1545 * 2768 * * * * * * * 1108 * 6158 34 0 * * * * * * 7135 0 0 S 35 2149 * 4091 2579 6584 3366 5467 6481 4567 3685 6604 4680 6690 4797 3622 3851 5913 5312 * * 35 0 * * * * * * 7135 0 0 N 36 4553 * 2047 2151 * 4996 6691 5510 5561 * * 3222 * 2826 * 3768 4548 4951 * 6728 36 0 * * * * * * 7135 0 0 F 37 6354 * * * 2923 * * 3488 * 1007 5812 * * * * * 6051 2290 4974 * 37 0 * * * * * * 7135 0 0 R 38 6050 * * * * * 6072 5913 418 4638 5075 * * 5425 3246 7288 * * * * 38 0 * * * * * * 7135 0 0 V 39 2239 * 3551 3043 6631 * 5315 5635 3700 4582 4698 3978 * 3519 5585 4316 4131 3675 * 6393 39 0 * * * * * * 7135 0 0 L 40 4187 * * 3751 5116 * 6576 4026 2291 2161 3747 5502 * 3796 3739 * 6266 4270 6197 5616 40 0 * * * * * * 7135 0 0 C 41 4870 4744 * * 6042 6685 * 1241 * 2097 * * * * * * * 2020 * * 41 0 * * * * * * 7135 0 0 E 42 2252 6272 * 1762 4631 * 4343 * 4455 * 5746 * * 2821 6510 2798 * * * 4964 42 18 6331 * 1000 1000 * * 7137 1000 0 L 43 3280 5676 4229 2967 6435 * * 4185 3397 4654 4867 5486 4419 3419 3631 3390 4429 4210 6705 6361 43 0 * * * * * * 7137 0 0 E 44 4441 * 4114 1957 5642 * 5601 5219 2541 3771 6569 4875 * 3930 3257 * 6020 3552 * 6572 44 31 6180 7094 0 * * * 7215 1000 0 S 45 4103 5316 * 3326 3656 6638 5497 5759 3799 2718 7116 5833 6202 4792 * 2651 2574 4813 * 5268 45 0 * * * * * 0 7138 0 1000 G 46 6244 * 4788 3898 * 1016 3908 * 4053 * * 3144 6699 5540 4957 3543 * * * * 46 45 5039 * 1255 784 0 * 7233 2051 1000 V 47 4913 5270 * 5283 4846 * 6479 1255 * 4093 4416 * * * * * 4965 1912 * 4413 47 31 6886 6289 0 * * * 7171 1000 0 P 48 4601 * 3491 3729 * 6493 6551 * 4439 6067 * 4793 958 5116 * 3781 5343 6988 * 5217 48 0 * * * * 0 * 7140 0 1000 A 49 2370 5066 5690 5282 6442 4925 * 3864 3965 3786 6021 * 2334 6050 6057 4213 5252 2662 * * 49 0 * * * * * * 7171 0 0 E 50 3080 * 3110 2082 * 4113 6267 7255 3974 6021 5877 3576 5529 4393 * 2912 4109 6331 * * 50 0 * * * * * * 7171 0 0 E 51 4030 * 3206 2836 5595 5921 4740 5943 3688 4487 * 4477 * 2447 3422 3584 5520 4925 * 5821 51 17 * 6423 * * * * 7171 0 0 A 52 6766 4884 * * 4419 * 5863 3588 * 3016 4028 * * 752 6281 * * 5766 * * 52 0 * * * * 0 * 7154 0 1000 Q 53 5078 6726 5889 4525 7645 * 4546 5482 2359 * 4892 * * 3352 1311 5531 * 4068 6785 6573 53 15 * 6620 * * * * 7172 0 0 I 54 * * * * 5250 * * 3144 5276 426 5054 * * * 6238 * * 6585 4763 * 54 0 * * * * 0 * 7167 0 1000 V 55 * 5353 * 6417 3279 * * 1574 * 2230 6815 * * 6052 6588 4873 5748 2510 * 4350 55 20 6208 * 0 * * * 7173 1000 0 Y 56 5907 4212 * * 1697 6815 3129 4369 6421 3375 * * * * 6338 * 6000 5112 5261 1953 56 73 7020 4576 1585 585 * * 7173 1000 0 M 57 2949 5280 4219 4708 * 4456 * * 3287 5036 5097 2348 6178 3853 3428 3419 6152 6078 * 4312 57 30 6333 6950 2322 322 0 * 7134 1000 2769 E 58 6587 6407 4154 5227 6678 625 * * 5095 * 5259 3410 7053 6278 * 4265 6051 * * * 58 68 * 4446 * * 0 * 7178 0 1000 Q 59 5181 6389 5302 5994 5897 3438 6425 5600 2104 6221 5229 4768 * 2695 2410 4746 4327 4676 * * 59 66 6762 4827 2000 415 0 * 7508 1000 2688 L 60 5351 4945 6021 2393 5490 * 5753 3704 3356 4305 6811 4841 3571 3634 4012 6852 5068 2905 6339 5900 60 92 6277 4360 1000 1000 0 * 7166 1000 2648 L 61 4918 * 5005 6478 5160 * * 3489 * 635 4600 * * 6275 * * 5976 3417 * * 61 136 4386 4575 1031 969 0 * 7154 2393 2788 T 62 4208 * 4357 3997 * * 7193 6003 3523 1977 4551 4417 * 3687 4600 2721 3547 5295 * * 62 76 6406 4666 2322 322 0 * 7503 1000 2693 D 63 6201 * 1386 2987 * 4109 5703 4566 3430 6475 * 2976 * 3991 5013 4914 * * * * 63 71 * 4372 * * 0 * 7507 0 2584 D 64 4294 * 1051 3208 * 4904 * * 6607 6631 6629 3598 4010 5432 5548 3621 5378 * * * 64 38 5793 7027 0 * 0 * 7309 1000 2881 H 65 3605 6542 2622 3981 6182 4187 4585 * 3155 6559 5698 3637 * 4642 4749 3060 3148 6567 6331 6002 65 119 * 3657 * * 0 * 7308 0 1000 C 66 3560 4549 5215 4235 5472 6212 6274 5346 2292 4858 5108 4581 * 3616 3379 3538 3303 6386 * 4949 66 100 * 3900 * * 140 3436 7266 0 4113 S 67 5308 4645 6084 * 5609 6291 5674 5990 4786 3457 * 5039 3323 * * 3199 1132 5845 * 6482 67 9 * 7298 * * 0 * 7156 0 3691 L 68 5886 * 5946 * 6262 * * 2888 6024 707 4168 * * * * * 6147 3045 * * 68 15 6627 * 0 * 0 * 7171 1000 1000 G 69 2877 6662 3917 2475 7482 3622 5503 6892 3273 5371 * 4669 * 4114 5339 2313 6591 * * 5082 69 0 * * * * * * 7158 0 0 S 70 3902 6027 2069 2211 5260 5515 5341 5564 4897 * 6565 3730 * 4107 * 2797 4985 * * 5900 70 0 * * * * * * 7158 0 0 Y 71 3570 4466 * * 4703 5873 5213 5222 * 3206 * 6299 * 4454 * 5372 * 4196 6505 986 71 0 * * * * * * 7160 0 0 G 72 5495 * 4300 5742 * 963 7009 6283 3534 5787 5992 3116 * 4774 4979 4188 * 5943 * * 72 0 * * * * * * 7166 0 0 L 73 5070 * * * 5925 * * 961 6283 2440 6663 * * * * * 5787 2218 * * 73 17 7415 7413 0 * * * 7166 1000 0 K 74 4648 * 5113 3246 * 3857 5601 * 2093 5855 6247 6751 6570 2733 3592 4199 3690 3536 * * 74 17 6410 * 1585 585 0 * 7181 1000 1000 D 75 4522 * 1773 2351 * * 5535 * 5258 6066 * 2700 4545 5167 6522 3183 4555 * * 5876 75 0 * * * * * * 7144 0 0 G 76 6848 * 2911 4016 6086 891 * * 4925 * * 2883 * 5758 * 4473 * * * 6555 76 0 * * * * * * 7144 0 0 D 77 3631 4708 1657 6164 5916 * 4189 * 4517 6813 6303 5054 * 4552 6536 2417 3331 4823 * 6991 77 29 5631 * 0 * * * 7117 1586 0 M 78 5104 * 5856 6074 3575 * 6474 3033 3925 3676 4728 6529 6232 * 4071 5885 2052 2426 * 6397 78 0 * * * * * * 7117 0 0 V 79 * * * * * * * 1374 * 1474 * * * * * * * 1976 * * 79 16 * 6486 * * * * 7101 0 0 V 80 4854 * 5492 * 3456 * 2411 2900 6478 3270 5481 6280 * 4015 6774 6287 3842 2596 * 4036 80 0 * * * * 0 * 7053 0 1000 L 81 6019 5600 * * * * * 5347 * 831 2698 * * * * * * 2252 * 6232 81 8 7480 * 0 * * * 7054 1000 0 L 82 6113 * * * 4721 * 5038 3886 5882 1964 3385 * * 3973 4098 4012 4749 1947 * * 82 30 6231 7091 0 * * * 6972 1000 0 Q 83 4795 * * 3936 * 3700 5162 4291 3022 2594 * * 4022 4055 3664 3682 4371 2977 * * 83 0 * * * * * 0 6891 0 1000 K 84 3631 * * * * 6287 * 5713 1368 4468 * 4911 5754 4548 2415 3389 4259 6304 * 6332 84 20 6211 * 0 * * 0 6887 1000 1000 D 85 3488 * 4279 3643 5511 * * 4433 2716 3508 4318 5223 3277 3745 2986 4230 5959 5591 * * 85 60 4620 * 663 1441 0 * 7109 1693 1000 N 86 3203 * 4643 4097 5422 4973 * * 2794 * 5770 3332 3890 4168 2106 4083 5994 4442 * * 86 0 * * * * * * 7147 0 0 V 87 2204 5094 5231 4169 4719 2747 5804 6689 3991 * 5735 4489 3626 4669 5533 3866 4368 3799 * * 87 0 * * * * * * 7070 0 0 G 88 3247 * 3243 4784 * 2065 * * 4459 5371 * 4225 2395 * 5320 3084 5296 4959 * * 88 0 * * * * * * 7085 0 0 L 89 2472 * 5216 4801 6358 * * 4275 * 2513 5101 4053 2659 3803 5552 4445 3752 4132 * * 89 29 * 5638 * * * * 7096 0 0 R 90 3656 * * * 5472 4005 * 4008 3830 3801 5734 4584 3246 2514 2252 3629 * * * * 90 34 5429 * 0 * * 0 7089 1000 1000 T 91 2691 * * * * 4041 * * * 5414 * 3275 2127 5181 * 2695 2174 5317 * * 91 29 5633 * 1585 585 0 * 6948 1000 1000 P 92 3520 * 4083 * * * * * 4936 * * * 1035 5251 * 2597 3096 5331 * * 92 33 5452 * 1585 585 * * 6730 1000 0 G 93 2595 * 5273 3695 * 3590 * * 4112 * * 5143 4108 5264 * 2524 3598 2172 * * 93 48 4928 * 2322 322 * * 6604 1000 0 R 94 1915 * * 3408 * 4937 * * 4800 4936 * 4165 3115 3575 2458 4217 4360 * * * 94 0 * * * * * * 6478 0 0 T 95 4005 * * 4699 * 5135 * * * 5053 * 4813 3277 3826 4768 2262 1611 4089 * * 95 50 4871 * 0 * * * 6444 1000 0 P 96 2665 * * * * 4788 * * * * * * 745 * * 3531 3685 4469 * * 96 0 * * * * * * 5883 0 0 S 97 1765 * * * * * 4196 * * * * 4280 4275 2946 * 1424 4453 * * * 97 0 * * * * * * 5445 0 0 G 98 3183 * 4274 * * 2377 * 3074 * 4327 * * 2736 4142 * 2713 3916 4277 * * 98 0 * * * * * * 5263 0 0 P 99 * * * 3896 * * * * * * * * 188 4180 * * * * * * 99 0 * * * * * * 5096 0 0 S 100 1664 * * * * * * * 3798 * * * 3719 * 4112 1631 2681 * * * 100 0 * * * * * * 4996 0 0 S 101 * * * 3396 * * * * * * * * * * 3519 736 3230 3174 * * 101 0 * * * * * * 4147 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * 0 * * * 3044 0 0 //