HHsearch 1.5 NAME d1ug8a_ FAM FILE d1ug8a_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1ug8a_.a3m DATE Tue Mar 9 01:14:07 2010 LENG 87 match states, 87 columns in multiple alignment FILT 17 out of 21 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.3831 -1.1349 SEQ >ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHCSSCCEEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCSEEEEEECCTTTSCCCSCC >sa_dssp EEEEECDECEECBDEBBEDADEADEDEEDEDCEBEDBEDEDCEBADEBAEECBDECBCCCCEEDEEDEDBABACCCDEEEEEDEEEE >ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCHHHCCCCCC >ss_conf 987762116999999999999985177776578448878999999998887507871353310355501899997153021187789 >Consensus xxxxxxxexkxfixxvxxxIxefLxxxexxelxlxpCNxFxRkLiYqxixakyxxkIxlesxxnenkxxxIvvxRxxeeExxxxxxx >d1ug8a_ GSSGSSGDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEEERSGPSSG >UniRef50_B0XEX2(139-210:539) Poly(A)-specific ribonuclease n=1 Tax=Culex quinquefasciatus RepID=B0XEX2_CULQU E=3e-05 s/c=0.69 id=34% cov=84% --------EEKLMAEIEERIGVFLASEEK-DFTITNCNGFQRKLVYQMIEAKFRKQISTSSVELENKHKGILVERKRTKEQ------ >UniRef50_Q7PT32(187-262:631) PolyA-specific ribonuclease (AGAP007399-PA) n=2 Tax=Culicidae RepID=Q7PT32_ANOGA E=0.0009 s/c=0.59 id=33% cov=86% -------EHQQQVDDTAASIEEFLQS-DRQELIVGSCNAFQRKLIYQMIEQRYQRKVSTSTvsLENNQKAIKVERKRSTEEEQA----- >UniRef50_UPI00006A34AC(172-249:642) PREDICTED: similar to poly(A)-specific ribonuclease n=1 Tax=Ciona intestinalis RepID=UPI00006A34AC E=7e-18 s/c=1.18 id=33% cov=87% GPSTPITDQktKDFTEKVVAKIKNFLENTEDSEIVLEPCNSYLRKILFENIPAAFPGKILVESRTDEQTHqRHIVVVR------------ >UniRef50_B9X256(159-231:628) Similar to poly(A)-specific ribonuclease, PARN n=2 Tax=Obtectomera RepID=B9X256_BOMMO E=3e-17 s/c=1.22 id=24% cov=85% -------EHKAYVEDICNQVHQFLEEGQLDEMEIDKCNSFVRLLLFQELRARFKDKILVETKILENKNRLLNVKRVKSQD------- >UniRef50_UPI00019255AF(182-255:502) PREDICTED: similar to poly(A)-specific ribonuclease n=1 Tax=Hydra magnipapillata RepID=UPI00019255AF E=7e-17 s/c=1.19 id=35% cov=86% -------DQRDFINSVCENIEKFMKDDSLKTYDLPPCSPFQRTLLYEYLEEKYPRGLYLKSVVNENNEKIIRGVKITKNEE------ >UniRef50_B3RMU1(195-267:511) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RMU1_TRIAD E=2e-15 s/c=1.14 id=24% cov=85% ---------QQFVKDMIQLIDEWLSDNSKKILQFPSCSGYHRKIIYELLYARCTDKNMLPETVREESGIYILAKKLDEKEKA----- >UniRef50_UPI0000519A06(157-227:576) PREDICTED: similar to poly(A)-specific ribonuclease (deadenylation nuclease) n=2 Tax=Apocrita RepID=UPI0000519A06 E=8e-14 s/c=1.10 id=24% cov=76% --------ERPQIEEICSRIDEFVTS-ETEELLIEKCNAFIRRLVYQEVKLRWPNKLKVESKMN-NFGCILVVQR------------ >UniRef50_D2V2U5(286-355:707) Poly(A)-specific ribonuclease n=1 Tax=Naegleria gruberi RepID=D2V2U5_NAEGR E=5e-12 s/c=1.03 id=23% cov=82% -------EQREFLENCKSRVAEWFDNSEDDDINLDPCNTFERKLLFQ----EFGEMITLTTIYANNRTAFIRVQRASGESE------ >UniRef50_UPI000186CDEF(162-225:550) poly A-specific ribonuclease PARN, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CDEF E=8e-08 s/c=0.91 id=20% cov=75% -------EHSELINKILNEIDEVLKEKTKKKITIEKNNSYIRRLIYSAVEAKYGKKILLESNKNETMTVFV---------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1615 0 0 S 2 * * * * * * * * * * * * 803 * * 1229 * * * * 2 0 * * * * * * 1615 0 0 S 3 * * * * * * * * * * * * * * * 0 * * * * 3 0 * * * * * * 1615 0 0 G 4 * * * * * 1229 * * * * * * * * * * 803 * * * 4 0 * * * * * * 1615 0 0 S 5 * * * * * * * * * * * * 803 * * 1229 * * * * 5 0 * * * * * * 1615 0 0 S 6 * * * * * * * 803 * * * * * * * 1229 * * * * 6 0 * * * * * * 1615 0 0 G 7 * * * * * 1229 * * * * * * * * * * 803 * * * 7 0 * * * * * * 1615 0 0 D 8 * * 1162 855 * * * * * * * * * * * * * * * * 8 0 * * * * * * 3626 0 0 Q 9 * * * 2751 * * 1410 * * * * * * 1331 * * * 3686 * * 9 89 4065 * 1000 1000 * * 3828 1000 0 K 10 * * * 3768 * * * * 1631 * * * * 1716 2173 3685 * * * * 10 0 * * * * * * 4029 0 0 K 11 3762 * 2944 2147 * * * * 2592 * * * 2451 2582 * * 4193 * * * 11 81 4193 * 1000 1000 * * 4029 1000 0 F 12 * * * * 830 * * * * 2726 * * * 2824 * * * 3811 * 3762 12 0 * * * * * * 4029 0 0 I 13 * * * * * * * 1483 * 3609 3768 * * * * * 3200 1403 * * 13 0 * * * * * * 4029 0 0 D 14 3768 * 1792 1606 * * * * 3479 * * 2703 * * * 3920 * * * * 14 0 * * * * * * 4029 0 0 Q 15 * * 1475 2865 * 3920 * * 2422 * * 3609 * 3434 * 3722 * * * * 15 0 * * * * * * 4029 0 0 V 16 3920 3609 * * 3811 * * 1792 * * 3479 * * * * * 3693 1622 * * 16 0 * * * * * * 4029 0 0 I 17 3693 1839 * 3768 * * * 2882 3609 3685 3811 * * * * 4388 * 2686 * * 17 0 * * * * * * 4029 0 0 E 18 2425 * * 2049 * * * * 3071 * * 2723 * 3479 * 2238 * * * * 18 0 * * * * * * 4029 0 0 K 19 * * * 3685 * * * * 1903 3479 * 3722 * 3762 1564 3693 * * * * 19 0 * * * * * * 4029 0 0 I 20 * * * * * * * 463 * 3811 * * * * * * * 2297 * * 20 0 * * * * * * 4029 0 0 E 21 3609 * 2112 1682 * 3045 3762 * 3200 * * * * * * 3811 * * * * 21 0 * * * * * * 4029 0 0 D 22 4388 * 2610 1131 * * * * 3722 * * 3200 * 3762 * * * 3768 * * 22 0 * * * * * * 4029 0 0 F 23 * * * * 649 * * * * 4424 3920 * * * * * * 3685 2542 * 23 0 * * * * * * 4029 0 0 L 24 4388 * * * 3609 * * * * 590 3722 * * * * * * 2944 * * 24 0 * * * * * * 4029 0 0 Q 25 3100 * 3633 2034 * * * * 2221 * * * * 2380 * 3473 4013 * * * 25 0 * * * * * * 4083 0 0 S 26 * * 1963 2704 * 4451 * * * * * 2421 * * * 1484 * * * * 26 323 * 2319 * * * * 4083 0 0 E 27 * * 3591 2385 * 2837 * * 3371 * * 3188 2921 * * 3595 2605 * * * 27 0 * * * * 0 * 3720 0 1983 E 28 4713 * 2461 1078 * * * * * * * * * 3910 * 2642 3646 * * * 28 0 * * * * * * 3980 0 0 K 29 * * 1881 * * 2835 * * 1849 2884 * 4617 * * 3807 * 3987 * * * 29 153 * 3310 * * * * 3980 0 0 R 30 4215 * 2218 3811 * * * * 1439 * * * * 3561 4289 3132 4596 * * * 30 0 * * * * 0 * 3901 0 1555 S 31 4348 * 2887 1321 * * * 3454 3646 * * 3662 * * 4245 4516 3859 * * * 31 0 * * * * * * 3980 0 0 L 32 * * * * 3161 * * 1966 * 1171 3910 * * * * * 4245 * * 3859 32 0 * * * * * * 3980 0 0 E 33 * * 3189 2577 * * * 3188 4713 3156 * 3786 * 3454 * 4245 2810 3271 * * 33 0 * * * * * * 3980 0 0 L 34 * * * * 3454 * * 1877 * 823 * * * * * * * 3807 * * 34 0 * * * * * * 3980 0 0 D 35 * * 2452 1620 * 3807 * * * * * * 1483 * * * 3995 * * * 35 0 * * * * * * 3980 0 0 P 36 * * * * * * * * 1906 * * 3995 1125 * * 2239 * * * * 36 0 * * * * * * 3980 0 0 C 37 * 120 * * * * * * * * * 3646 * * * * * * * * 37 0 * * * * * * 3980 0 0 T 38 * * * * * * * * * * * 479 * * * 2642 3028 * * * 38 0 * * * * * * 3980 0 0 G 39 2119 * * * * 1602 * * * * * * 3859 * * 1741 3786 * * * 39 56 * 4713 * * * * 3980 0 0 F 40 * * * * 603 * * * * * * * * * * * * * * 1550 40 0 * * * * * 0 3948 0 1000 Q 41 * * * 3740 * * 3413 2769 * 1968 * * * 1731 * * * 2970 * * 41 0 * * * * * 0 3948 0 1000 R 42 * * * * * * * * * * * * * * 0 * * * * * 42 0 * * * * * 0 3948 0 1000 K 43 * * * * * * * * 826 3869 * * * * 1756 * 3810 * * * 43 0 * * * * * 0 3948 0 1000 L 44 4312 4655 * * * * * 2303 * 500 * * * * * * * * * * 44 0 * * * * * 0 3948 0 1000 I 45 * * * * * * * 1131 * 1274 * * * * * * * 2943 * * 45 0 * * * * * 0 3948 0 1000 Y 46 * * * * 1988 * * * * * * * * * * * * * * 419 46 0 * * * * * 0 3948 0 1000 Q 47 * * * 1458 * * * * * * * * * 852 * 3607 * * * * 47 112 * 3740 * * * 0 3948 0 1000 T 48 3478 * * 2810 * * * * * 3325 2748 3047 * * * 4193 1909 * * 3699 48 0 * * * * * 0 3788 0 1551 L 49 * * * * * * * 1445 * 1517 * * * * * * 3970 2188 * * 49 0 * * * * * 0 3788 0 1551 S 50 * * * 1275 * 3970 * * 2946 * * * 3047 * 3756 3344 * * * 3325 50 0 * * * * * 0 3788 0 1551 W 51 852 * * 3699 * * 4031 * * 3866 * * * 2831 * * * * 3344 * 51 0 * * * * 807 1222 3788 0 1551 K 52 3200 * * 2601 * * * * 1435 * * * * * 1488 * * * * * 52 0 * * * * 0 * 3948 0 1000 Y 53 * 3454 * * 1267 * * * * * * * * * * * * * 3987 1217 53 0 * * * * * * 3980 0 0 P 54 * * * * * 2715 * * 3910 * * * 1166 3807 3114 * 2750 * * * 54 56 * 4708 * * * * 3980 0 0 K 55 * * 2299 3684 * 3288 * * 2089 * * 2992 * * 2764 3202 * * * * 55 64 * 4519 * * 0 * 4083 0 1000 G 56 * * * * * 1745 * * 862 * 3633 * * 3818 * * * * * * 56 0 * * * * 0 * 4083 0 1000 I 57 * * * * * * * 786 * 1957 * 3454 * * * * * 3807 * * 57 0 * * * * * * 3980 0 0 H 58 * * * * * * 2512 * 3987 2000 3454 * * * * 2898 3786 2788 * 3859 58 0 * * * * * * 3980 0 0 V 59 * * * * * * * * * 867 * * * * * * 2898 1654 * * 59 0 * * * * * * 3980 0 0 E 60 * * 4713 895 * * 4123 * 3859 * * * 3454 * * 2898 3786 * * * 60 0 * * * * * * 3980 0 0 T 61 * * * 3454 * * * * 3458 * * * * * * 1227 1357 * * * 61 198 3751 4213 1000 1000 * * 3980 1000 0 L 62 4461 * * * * * 4376 3626 2292 2544 * 2811 * * 3840 * 3449 2778 * * 62 0 * * * * 0 * 4065 0 1000 E 63 * * * 2100 * 4519 * 3795 3719 * 3033 * * 3925 4271 * 3367 2639 * 3684 63 0 * * * * * * 4083 0 0 T 64 3684 * 4304 * * * * * * 2821 * 1137 * * 3514 * 2413 * * * 64 89 * 4063 * * * * 4083 0 0 D 65 * * 3316 689 * * * * 3799 * * 2270 * * * * * * * * 65 72 4364 * 0 * 0 * 4039 1000 1000 K 66 * * * 2844 * * * * 2334 * * 1258 * 2570 * * 3719 * * * 66 64 * 4519 * * * * 4083 0 0 K 67 * * * * 3968 * * * 994 * 3685 3722 * 4193 3609 3479 4207 * * * 67 81 4193 * 1000 1000 * 0 4029 1000 1000 E 68 3693 * 3811 2093 * 2312 2971 * * * * 3762 * 4193 * * 2646 * * * 68 80 4207 * 0 * * 0 4029 1000 1000 R 69 3609 2944 * * * * * 2582 2745 * * * * * 1343 * * 3685 * * 69 0 * * * * * 0 4029 0 1000 H 70 * * * * 1870 3768 2692 2245 3693 3762 * * * * * * * * * 2875 70 0 * * * * 0 * 4029 0 1000 I 71 * * * * * * * 617 * 2338 * * * * * * * 2736 * * 71 0 * * * * * * 4083 0 0 V 72 * * * 3643 * * * * * 2562 * 3659 * * 2249 * * 1117 * * 72 0 * * * * * * 3967 0 0 I 73 2111 * * * * 3658 * 3373 * * * * * * 3643 * * 964 * * 73 0 * * * * * * 3967 0 0 S 74 * * * 3716 * * * * 1986 4414 * * * 2732 4354 2592 3858 2394 * * 74 0 * * * * * * 3967 0 0 K 75 * * * * * * * * 1296 * * * * * 755 * * * * * 75 0 * * * * * * 3967 0 0 V 76 3195 3592 * * * * * 3408 3440 2581 * * * * * 3472 * 1457 * * 76 0 * * * * * * 3804 0 0 D 77 * * 1687 * * * * * 2417 * * * * * 3440 3195 1733 * * * 77 0 * * * * * * 3804 0 0 E 78 * * 3543 1213 * 3195 * * 3408 * * * * * * 3262 2514 * * * 78 0 * * * * * * 3804 0 0 E 79 * * * 1211 * * * * 1818 * * 2474 * 3262 * * * * * * 79 0 * * * * * * 3804 0 0 E 80 * * 3187 374 * * * * * * * * * * * 3075 * * * * 80 0 * * * * * * 3696 0 0 R 81 * * * 1352 * * * * 2188 * * * * 2091 2697 * * * * * 81 0 * * * * * * 3420 0 0 S 82 587 * * * * * * * * * * * * * * 1580 * * * * 82 0 * * * * * * 2071 0 0 G 83 * * * * * 0 * * * * * * * * * * * * * * 83 0 * * * * * * 1000 0 0 P 84 * * * * * * * * * * * * 0 * * * * * * * 84 0 * * * * * * 1000 0 0 S 85 * * * * * * * * * * * * * * * 0 * * * * 85 0 * * * * * * 1000 0 0 S 86 * * * * * * * * * * * * * * * 0 * * * * 86 0 * * * * * * 1000 0 0 G 87 * * * * * 0 * * * * * * * * * * * * * * 87 0 * * 0 * * * 1000 0 0 //