HHsearch 1.5 NAME d1u94a2 FAM FILE d1u94a2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1u94a2.a3m DATE Tue Mar 9 21:46:07 2010 LENG 60 match states, 60 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4265 1.5082 SEQ >ss_dssp CHHHHHHHHHHHTTSEECCTTCEEETTEEEESSHHHHHHHHHHCHHHHHHHHHHHHHHHC >sa_dssp EDCBEBADDACECECBDEEEEDCCBEEEEBBDDDEEABDCADEDDECBEDACECBDEEDE >ss_pred CHHHHHHHHHHHCCHHHHCCCEEEECCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHC >ss_conf 902579989976064652362143378311010899999963179999999999999629 >Consensus xxxgxiiDxaxxxxiIxKxGsWYsyxxxxlgQGrenaxxxLxenpxlxxeiexxvrxxLl >d1u94a2 NFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLL >UniRef50_A4PHN2(347-403:435) RecA n=1 Tax=Physcomitrella patens RepID=A4PHN2_PHYPA E=3e-15 s/c=1.46 id=33% cov=97% ---GEVLDLGVKHGLLGQSGSWYSYEGKNFANGREGAKKYLQEHTDLTDALVVAIKEKIL >UniRef50_A8I670(324-382:415) Chloroplast RecA recombination protein n=3 Tax=Chlamydomonas reinhardtii RepID=A8I670_CHLRE E=1e-13 s/c=1.32 id=33% cov=100% DFLGGLIDTAERLKVLTRRGAFYYYGDQRLGQGREKVLAALREDAERTAAIEAAVRDVL- >UniRef50_C1TRT4(281-329:386) Protein recA n=2 Tax=Synergistaceae RepID=C1TRT4_9BACT E=5e-13 s/c=1.54 id=40% cov=83% ------VDMAIDAGVIKRKGSWLAYKGETLGQGKDNVANYLEEHPDLNEEIVKAV----- >UniRef50_B7FQ63(338-396:431) Chloroplast-targeted nuclear-encoded recombinase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQ63_PHATR E=6e-11 s/c=1.16 id=30% cov=100% DQIGCMLDAAMDLNIIERRGSWFSYKGQNMAQGRINVVEMIKSDTKLMAQLETEVRLAL- >UniRef50_Q59486(284-338:341) Protein recA, plasmid n=3 Tax=Lactococcus lactis RepID=RECA2_LACLA E=1e-06 s/c=0.99 id=27% cov=93% ----DVVTTALQLGVVKKLGEWYSFNGQKLGRGIFGVKEYLSHHPSVFNALDNLTREAL- >UniRef50_P47581(275-329:340) Protein recA n=2 Tax=Mycoplasma RepID=RECA_MYCGE E=0.0001 s/c=0.86 id=29% cov=93% ----EVIDLALKFNVVVRAGNSYSFNNESIAVGKEKLLNVLSEKPALFEQIKELTVQQL- >UniRef50_B5RLK6(286-343:363) Protein recA n=43 Tax=cellular organisms RepID=RECA_BORDL E=1e-12 s/c=1.28 id=29% cov=97% --EASILDAAIKYNLVQKSGSWYAMGDDNLGQGRENVIEYLFKEKALANELENKLRKII- >UniRef50_B1AI69(268-324:334) Protein recA n=15 Tax=Ureaplasma RepID=RECA_UREP2 E=3e-12 s/c=1.28 id=28% cov=97% DYNNEIIDFAIQYGVLKKNGSWFYFNDNKIGQGREQLKNTLSKNNELFIQISEKTLE--- >UniRef50_Q9ZUP2(329-383:430) DNA repair protein recA homolog 3, mitochondrial n=79 Tax=cellular organisms RepID=RECA3_ARATH E=8e-10 s/c=1.18 id=34% cov=93% ----EIIDLSIKHKFIAKNGTFYNLNGKNY-HGKEALKRFLKQNESDQEELMKKLQDKLI # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 718 * * * * * * * * 2025 * * * 2774 * * * * 1 0 * * * * * * 2871 0 0 F 2 * * * * 1928 * * * * * * * * 1782 * * 2966 * * 1651 2 0 * * * * * * 2871 0 0 Y 3 * * * 1497 3316 * * 3721 * 2237 3825 3510 * * * * * * * 3337 3 0 * * * * * * 3334 0 0 G 4 4327 * * * * 438 * * * * * 3791 * * * 2837 * * * * 4 0 * * * * * * 3418 0 0 E 5 * 2190 3617 1184 * 3910 * * * 4854 * * * * * 2662 * * * * 5 0 * * * * * * 3777 0 0 L 6 * * * * * * * 1749 * 1530 3546 * * * * * * 1886 * * 6 0 * * * * * * 3777 0 0 V 7 * * * * * * * 1040 * 1302 * * * * * * * 3210 * * 7 0 * * * * * * 3787 0 0 D 8 * * 172 * * * * * 4884 * * * * * * * 3666 * * * 8 0 * * * * * * 3787 0 0 L 9 2417 3538 * * 3368 * * 4884 * 1429 3166 * * * * * 3512 * 5296 * 9 0 * * * * * * 3787 0 0 G 10 573 * * * * 1914 * * * * * * * * * 4000 * * * * 10 0 * * * * * * 3787 0 0 V 11 * * 4850 3028 * * * 2164 * 2764 3611 * * * * 4884 4922 1628 * * 11 0 * * * * * * 3787 0 0 K 12 * * 2283 2076 * * * 5338 1538 5022 * 4965 * 3490 4783 * * * * * 12 0 * * * * * * 3805 0 0 E 13 3066 * * 5316 4230 * 2531 5116 * 1636 4172 5604 * 4355 5219 * * * * 2977 13 0 * * * * * * 3805 0 0 K 14 * * 3033 2887 * 1613 * * 2315 * * 2436 * * * * 5052 * * * 14 0 * * * * * * 3819 0 0 L 15 * * * * 2792 * * 1881 * 2138 * * * * * * * 1487 * * 15 0 * * * * * * 3819 0 0 I 16 * * * * * * * 878 * 3130 * * * * * * * 1549 * * 16 0 * * * * * * 3819 0 0 E 17 3129 * 4284 2737 * 4670 * * 2015 * * * * 3326 3843 5356 2970 3713 * * 17 0 * * * * * * 3819 0 0 K 18 * * * * * * * * 612 * * * * 4686 1704 * * * * * 18 0 * * * * * * 3834 0 0 A 19 2960 * * * * * * * 2141 4387 * 3332 * * 3217 1358 * * * * 19 0 * * * * * * 3834 0 0 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 3834 0 0 A 21 1389 * * 4387 * * * * * * * 4302 * * * 1121 4057 * * * 21 0 * * * * * * 3834 0 0 W 22 * * * * 3453 * * * * * * * * * * 4223 * * 226 * 22 0 * * * * * * 3938 0 0 Y 23 * * * * 1943 * * * * 5119 * * * * * * * * * 492 23 0 * * * * * * 3938 0 0 S 24 3233 * * * * * * * * * * 3495 * * 4342 942 3596 5343 * 2967 24 0 * * * * * * 3938 0 0 Y 25 * * 5072 * 2579 * 4947 * * 4124 5120 * * * * * * * * 547 25 0 * * * * * * 3938 0 0 K 26 * * 4158 3113 * 2354 * * 2053 * * 1619 * 4695 5166 * * * * * 26 0 * * * * * * 3938 0 0 G 27 * * 1706 2882 * 1163 * * 4994 * * 4223 * * * 5250 * * * * 27 0 * * * * * * 3938 0 0 E 28 5718 * 2595 1458 * * 5235 5456 3353 * 5143 4637 * 2784 * 4695 5282 5250 * * 28 0 * * * * * * 3938 0 0 K 29 * * * * * * * * 1743 * * 2041 * 2661 2198 4223 5119 * * * 29 0 * * * * * * 3938 0 0 I 30 * * * * 3659 * * 1513 * 1096 4466 * * * * * * * * 4124 30 85 * 4124 * * * * 3938 0 0 G 31 2031 * * * * 472 * * * * * * * * * 4853 * * * * 31 0 * * * * 0 * 3810 0 1000 Q 32 * * * * * * 4124 * * * * 4624 * 313 4514 * * 4223 * * 32 0 * * * * * * 3938 0 0 G 33 * * * * * 0 * * * * * * * * * * * * * * 33 0 * * * * * * 3938 0 0 K 34 * * * * * * 5247 4514 1306 4994 * * * * 1171 5637 5064 * * * 34 0 * * * * * * 3938 0 0 A 35 3924 * 2817 719 4514 * * 4466 * * * 5282 * * * * * 4994 * 4695 35 0 * * * * * * 3938 0 0 N 36 4124 * * * * 3568 * * 1739 * * 948 * 4637 * * * * * * 36 0 * * * * * * 3938 0 0 A 37 879 * * * * * * * * 2500 * * * * * 5718 5513 2068 * * 37 0 * * * * * * 3938 0 0 T 38 3695 * 5282 * * * * 3511 1836 2858 * * * * 2497 3837 4477 3330 * * 38 0 * * * * * * 3938 0 0 A 39 3350 * * 2529 * 5166 4994 * 2380 * * 2511 * 3700 3609 4173 4354 4695 * * 39 0 * * * * * * 3938 0 0 W 40 4878 * * * 1564 * 5500 * * 5159 4466 * * * * * 4637 4223 5489 1264 40 0 * * * * * * 3938 0 0 L 41 * * * * * * * 4466 * 67 * * * * * * * * * * 41 0 * * * * * * 3938 0 0 K 42 4378 * 4088 3204 5120 * * * 1670 4556 5456 * * 3870 3131 2862 4154 * * * 42 0 * * * * * * 3938 0 0 D 43 5187 * 2705 1060 * 4695 4514 * 3858 * * 5064 * 3553 * 3771 * * * * 43 0 * * * * * * 3938 0 0 N 44 * * 3221 5120 * * 2228 * 3540 * * 899 * * * 5143 * * * * 44 0 * * * * * * 3938 0 0 P 45 3467 * 5513 4124 * * * * 4227 * 5166 3924 893 * * 4947 3154 * * * 45 0 * * * * * * 3938 0 0 E 46 2755 * 1941 1701 * * 5235 * 3277 * * * * * * 2991 5143 * * * 46 0 * * * * * * 3938 0 0 T 47 * * 4124 * 4947 * * 2254 * 1253 3768 * * * 4878 * 5489 2725 * * 47 0 * * * * * * 3938 0 0 A 48 1864 5143 * * 2666 5574 * * 5187 5235 4466 5119 * 3654 3715 4994 2998 * * 3676 48 0 * * * * * * 3938 0 0 K 49 3657 * 2295 2175 * * * 3910 3063 4329 5159 2383 * 5718 * 5574 * * * * 49 0 * * * * * * 3938 0 0 E 50 3079 * 5247 832 * * 5064 * 4091 * * * * 2587 4695 * * * * * 50 0 * * * * * * 3938 0 0 I 51 * * * * * * * 909 * 1428 4695 * * * * * 5072 5187 * * 51 0 * * * * * * 3938 0 0 E 52 * * 3969 780 * * * * 2895 * 4124 5465 * * * 4637 * 3333 * * 52 0 * * * * * * 3938 0 0 K 53 3471 * 5718 2435 * 4543 * 5159 1475 * * 3363 * 4580 5166 * 3880 4624 * * 53 0 * * * * * * 3938 0 0 K 54 2648 * 5187 3136 * * * * 1450 2796 * * * 3635 5072 5250 5247 5235 * * 54 0 * * * * * * 3938 0 0 V 55 * * * * * * * 1620 * 2888 * * * * * * 2862 1314 * * 55 0 * * * * * * 3938 0 0 R 56 * * * * 4572 * * 5233 2745 4553 * * * 4099 678 * * 4148 * * 56 0 * * * * * * 4019 0 0 E 57 3080 * 3343 1433 * * * * 3908 3732 * * * 3187 * 3212 4934 5611 * * 57 0 * * * * * * 4011 0 0 L 58 2774 * * * * * * 4804 1608 3745 4111 5233 * 3008 3396 4836 4823 4602 * * 58 0 * * * * * * 3886 0 0 L 59 * * * * * * * 2943 * 394 3980 * * * * * * 4452 * * 59 0 * * * * * * 3876 0 0 L 60 * * * * * * * 1777 * 498 * * * * * * * * * * 60 0 * * 0 * * * 2835 0 0 //