HHsearch 1.5 NAME d1u5tb1 FAM FILE d1u5tb1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1u5tb1.a3m DATE Mon Mar 8 16:21:24 2010 LENG 94 match states, 94 columns in multiple alignment FILT 53 out of 57 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4061 -0.0933 SEQ >ss_dssp CCCSCCSSSTTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSCEEEEETTTEEEEEC >sa_dssp EEEDEDEEEEDBBCDAADCABEBACDDCCEEEEEECECECDBEDACDDABEDDBEDCCEBCDECADDAADCADEBDBEDBEBDEDEEEDCBBCD >ss_pred CCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEC >ss_conf 9865503788999999999999985100101110177523489999998765532753428899999999998359881599996573688859 >Consensus xxrexxxsxxlyhxELARxlxefLxxxxxxxxxxxxgxmItLxdlxxxyNRargxGxxLisPxdxxxAcxxxexlxLxxlxLrxfxsgvlxvxs >d1u5tb1 LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRILCVTS >UniRef50_UPI0000E4A253(191-276:349) PREDICTED: similar to Vacuolar protein sorting protein 36 (ELL-associated protein of 45 kDa), partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A253 E=2e-06 s/c=0.62 id=24% cov=93% VTRETHGSGLKYHEELAKQLSEALIAPVE-----ESGGMMAITDVYCRINRAR--GMELLSPDDLIDACQQFERLR-LPLRLRRFTSGVLVLES >UniRef50_D0A0M8(257-336:449) T. brucei spp.-specific protein n=2 Tax=Trypanosoma brucei RepID=D0A0M8_TRYBG E=2e-13 s/c=0.96 id=24% cov=79% -----------FHKELAWEIHSWITHE-KNHHVFGSMPLIPLIELFSLYNKARGE-CDLVSTNDVLHACRALDQQEYAQYTLKRLS-------- >UniRef50_C4R466(362-422:511) Component of the ESCRT-II complex n=1 Tax=Pichia pastoris GS115 RepID=C4R466_PICPG E=4e-08 s/c=0.97 id=38% cov=65% --------KSLYHKEVARQLVEFILNYDLVQ-----NDFISLCELYKLYNKSR--GLNLLSPSTFKLICEQLENV------------------- >UniRef50_C7Z6U3(451-534:647) Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z6U3_NECH7 E=9e-24 s/c=1.32 id=31% cov=90% -------SESLYLSELSRNLAEFLTDDSRGVLKKAGG-IITLVDLWAMFNRARG-GVELVSPADFEKAARLWSKLKL-PVRLRTFRSGVMVVQS >UniRef50_A8NKF3(291-379:470) Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKF3_COPC7 E=2e-11 s/c=0.79 id=22% cov=62% VTQDMIRDERKWFEELARELSRIL-QGSKGMMAERG--IIALDEVWGAWNRAR--GVALIPP-------------------------------- >UniRef50_B6K5P9(302-374:452) Putative uncharacterized protein n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5P9_SCHJY E=2e-08 s/c=0.83 id=28% cov=62% --------------ELSKSVAQVLHSYFK----KTSCAAVTLTVAWAIYNRTR--GIDLINPSLFLSVCQEMVKMNL----------------- >UniRef50_Q6BSQ4(386-471:665) DEHA2D06996p n=2 Tax=Debaryomyces hansenii RepID=Q6BSQ4_DEBHA E=2e-15 s/c=0.98 id=33% cov=71% -------TSNLYHQELARHISEYLTNFQLTKSSS----MITSQDLYAYYNRylvsTQGFGTDLIPHVDFNKSLNLFDSLKL----------------- >UniRef50_A0CF44(215-292:363) Chromosome undetermined scaffold_174, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CF44_PARTE E=4e-08 s/c=0.76 id=31% cov=66% -------SEDLFYEKLAEQVYKLCAELFPKM-----GGIISLLDVYYYFNKRRN--SSLVSPEEILKAGLQFQKL------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 1301 * * * * * * * 751 * * 1 0 * * * * * * 2721 0 0 D 2 * * 1308 * * * * * * * * * * * * 3216 1033 * * * 2 0 * * * * * * 2721 0 0 R 3 * * * * * * * * 3216 * * * * 2996 383 * * * * * 3 0 * * * * * * 2721 0 0 E 4 3216 * 1687 781 * * * * * * * * * * * * * * * * 4 0 * * * * * * 2721 0 0 K 5 * * * * * * * * 1699 * 2996 3216 * * * 3412 1454 * * * 5 0 * * * * * * 2721 0 0 F 6 * * * * 967 * 3388 2996 * * * * * * 3412 * * 3486 * 3566 6 0 * * * * * * 2721 0 0 L 7 * * * * * 1577 * * * 1444 * * * * 3108 * * * * 2463 7 144 3398 * 0 * * * 2809 1000 0 N 8 * * 3842 * * * * * * * * 2541 * * * 871 2241 * * * 8 0 * * * * * * 3334 0 0 K 9 * * * 1268 * 2435 * * 1659 * * * * * * 3586 * * * * 9 0 * * * * * * 3510 0 0 E 10 3648 * 2262 3485 * * * * 5128 4584 * 3808 * * 4344 1332 4863 * * * 10 0 * * * * * * 3579 0 0 L 11 4446 * * 4485 * * * * 2917 719 4292 5252 * 4039 * * * 5001 * * 11 0 * * * * * * 3749 0 0 F 12 * * * * 1661 * * * * * * * * * * * * * 3995 687 12 0 * * * * * * 3972 0 0 L 13 * * * * 3440 * 1092 4407 * 2127 * * * * * * * 4625 * 3033 13 0 * * * * * * 3972 0 0 D 14 4236 * 2631 2725 * * * 5109 3032 * 5695 5508 * 2193 4811 2973 4058 * * * 14 0 * * * * * * 3972 0 0 E 15 * * * 502 * * * * 3865 * * * * 2152 * * * * * * 15 0 * * * * * * 4200 0 0 I 16 * * * * * * * 3153 * 278 * * * * * * * 3998 * * 16 0 * * * * * * 4252 0 0 A 17 706 * * 4993 * * * * * * * * * * * 1491 * * * * 17 0 * * * * * * 4252 0 0 R 18 * * * 4727 * * 4763 * 2300 * 4861 * * * 615 * * * 4842 * 18 0 * * * * * * 4252 0 0 E 19 * * 5517 1703 * * 2546 * * * * 3034 * 1632 * 4618 6116 * * * 19 0 * * * * * * 4190 0 0 I 20 * * * * 5080 * * 1397 * 1091 4588 * * * * * * 3650 * * 20 0 * * * * * * 4190 0 0 Y 21 1649 4588 5445 * 5403 5751 3928 5570 * * * * * * * 2047 * 4759 * 2261 21 0 * * * * * * 4190 0 0 E 22 4909 * 2314 1045 * 4673 * * 4120 * * * * 4618 4338 3825 5403 * * * 22 45 * 5036 * * * * 4190 0 0 F 23 5408 * * * 1108 * * 3252 * 4684 * * * * * * * 3332 3111 2701 23 0 * * * * * 0 4154 0 1000 T 24 5142 2957 * * * * * 3071 * 692 4913 * * * * * 5129 4534 * * 24 249 * 2658 * * 0 * 4154 0 1000 L 25 4392 * 4390 5048 * * 2846 2695 3994 3124 4412 * * 4653 * 5540 1917 * * 5039 25 75 5249 5371 1000 1000 2214 350 4092 1000 2046 S 26 3337 * 2757 3697 * 4886 3695 * 4167 5266 * 2661 * 3536 * 2065 * * * * 26 31 * 5567 * * * 0 4067 0 2125 E 27 * * 3248 2636 3940 3186 5028 3659 4705 4398 * 3973 4016 * 4477 4894 * * * 2650 27 240 * 2707 * * * 0 4110 0 2064 F 28 4559 * 3201 * 1831 * * 3271 4563 4854 4794 * 4742 4710 3792 4334 4049 3420 * * 28 0 * * * * 829 1194 3859 0 2951 K 29 * * * 4090 * * * * 1513 2043 * * 3467 2676 3302 * * * * * 29 235 * 2733 * * 870 1143 4055 0 2255 D 30 4955 * 2888 3669 * 2751 * 5488 3734 * * 2540 4143 4541 * 4622 3353 3349 * * 30 85 * 4130 * * 2558 269 3938 0 2544 L 31 * * 5443 2756 * * 3208 4028 2401 4752 3683 * 3585 3049 5141 4788 * 3532 * * 31 195 * 2986 * * 2487 284 3901 0 2689 N 32 * * * 3835 * * 3911 * 1885 1490 4407 4612 * * 4976 3597 * * * 4870 32 50 * 4870 * * * 0 3788 0 3072 S 33 3478 * * 2212 4277 3221 5787 * 4753 3203 * * 5506 * 3735 2806 4653 3444 * * 33 0 * * * * 1903 449 3757 0 3152 D 34 * * 4757 3476 3641 5171 5497 * 1855 * 5113 * 4370 5318 3837 2017 4401 * * * 34 202 * 2936 * * 2201 354 3947 0 2628 T 35 2275 5964 * 2816 * 2674 5583 * 2699 4742 * * * * 3926 4012 3335 4661 * * 35 46 * 4981 * * 2169 363 3885 0 2980 N 36 2436 * * * * 1170 * * * 4321 * 2935 * * * 2396 * * * * 36 39 * 5219 * * 1057 945 3837 0 2867 Y 37 4181 4346 * * * 874 * * * * 3076 3915 * * * * 4295 5266 * 3501 37 111 * 3758 * * * 0 4134 0 2317 M 38 2638 * 4534 5240 * 1927 * 2526 * * 3218 * 3611 * * * 4753 3228 * * 38 92 4595 5603 2000 415 158 3268 4136 1000 2517 I 39 4525 * * * 4612 * * 2277 * 3209 1000 * * * * * 5852 3574 * * 39 229 * 2767 * * 0 * 3439 0 1420 I 40 * 5403 * * * * * 626 * 4411 3622 * * * * * * 2322 * * 40 0 * * * * 0 * 3534 0 2269 T 41 2574 * 5545 * * 5554 * * * * 5951 * 3775 * * 1942 1185 * * * 41 0 * * * * * * 3511 0 0 L 42 * * * * * * * 5559 * 366 3774 * * * * 3874 4980 5050 * * 42 0 * * * * * * 3511 0 0 V 43 4848 4737 3633 * 5855 * * 3390 * 3923 * * 3291 2697 * 4464 2118 2873 * * 43 0 * * * * * * 3511 0 0 D 44 * * 566 2105 * * * * * * * * * 4809 * * 5545 4847 * * 44 0 * * * * * * 3511 0 0 L 45 2910 * * * * * * 5040 * 1018 5626 * * * * * * 1632 * * 45 0 * * * * * * 3511 0 0 Y 46 * * * * 1761 * * * * * * * * * * * * * 2064 1102 46 0 * * * * * * 3511 0 0 A 47 1069 1751 * * * 4075 * * 4737 * * * * * * 4535 * * * 3537 47 0 * * * * * * 3511 0 0 M 48 4915 * 4203 4785 4832 6141 5626 3361 * 1582 3573 * * * 2827 * 4538 4481 * 3995 48 0 * * * * * * 3511 0 0 Y 49 * * * * 1845 * * 4606 * * * * * * * * * 3250 3633 1015 49 0 * * * * * * 3511 0 0 N 50 * * * * * * * * * * 4966 47 * * * * * * * * 50 53 4785 * 2000 415 * * 3511 1000 0 K 51 * * * * * * * * 2061 * * * * * 395 * * * * * 51 243 2687 * 2000 415 * * 3511 1802 0 S 52 775 5551 * * * * * * 4832 * * 4785 * * 5020 2368 3346 * * * 52 0 * * * * * * 3511 0 0 M 53 * * * * * * * * * 4203 3736 * * 2865 447 * * * * * 53 983 * 1017 * * * * 3511 0 0 R 54 * * * * * 774 * * 4214 * * 3199 * 3893 2435 * * * * * 54 779 * 1261 * * 3340 150 3866 0 2745 I 55 3710 * * 3284 2259 4480 * 1917 * 3480 * 3814 * * * * 4001 * * 3660 55 340 * 2252 * * 244 2681 3345 0 3055 G 56 3171 * * * * 170 * * * * * * * * * * * * * * 56 0 * * * * 458 1879 3295 0 2467 T 57 3507 3598 * * * * * 4426 * 4277 3135 * * * * 2733 1939 2406 * 5827 57 0 * * * * 904 1103 3498 0 1331 G 58 3077 4823 2497 1403 * 3120 * * * * * 2976 * * * 4363 * * * * 58 0 * * * * 0 * 3508 0 1000 L 59 * * * * * * * * * 48 4924 * * * * * * * * * 59 0 * * * * * * 3510 0 0 I 60 * * * * * * * 1383 * 2045 * * * * * * * 1418 * * 60 0 * * * * * * 3510 0 0 S 61 4985 * 4203 * * * * * * * * 3238 3106 * * 531 * * * * 61 0 * * * * * * 3510 0 0 P 62 4203 4786 * * * * 4970 * * * * * 293 * * * 4025 * * * 62 0 * * * * * * 3510 0 0 M 63 4744 * 3015 1865 * * * * * 5085 4974 4110 * 2709 5557 2303 4800 4940 * * 63 0 * * * * * * 3602 0 0 E 64 3999 * 570 2672 * * * * * 4859 * * * * 4800 * 4771 * * * 64 0 * * * * * * 3602 0 0 M 65 * * * * 1631 * * 3883 * 1332 3618 * * * * * * 2936 * * 65 0 * * * * * * 3602 0 0 R 66 * * * 3851 * * 5623 5632 2832 1662 4467 5079 * 4396 2823 * 5514 3532 5493 4651 66 0 * * * * * * 3756 0 0 E 67 5623 4896 4212 3653 * * 3734 * 1516 4035 * 3380 * 4369 3925 3661 4736 * * * 67 0 * * * * * * 3756 0 0 A 68 412 * * * * * * 4712 * 4328 * * * * * 3474 * 3825 * * 68 0 * * * * * * 3756 0 0 C 69 2867 792 * * * 5068 * 3540 * 2846 * * * * * 5035 * * * * 69 0 * * * * * * 3707 0 0 E 70 5686 * 4298 1693 * 4336 * * 4011 4546 * 3665 * 3261 3041 3609 5455 4846 * 5510 70 0 * * * * * * 3701 0 0 R 71 3576 * * 4599 * * * * 4114 1282 3585 * * 2388 3904 5776 * 5829 * 5123 71 0 * * * * * * 3699 0 0 F 72 4656 * * * 1362 * * 4640 * 2837 2520 * * * * * 4831 * 2459 * 72 0 * * * * * * 3699 0 0 E 73 * * 2290 1252 * 5506 * * 4760 * * 4016 5829 3087 6249 4659 5280 4599 * * 73 0 * * * * * * 3699 0 0 H 74 3708 * * 2927 * * 5575 * 1765 6032 * 4613 5682 5008 3583 1990 4843 * * * 74 0 * * * * * * 3699 0 0 L 75 5829 * 5496 5123 4475 * * 5208 * 705 2860 * * 4138 * * * 4284 * * 75 0 * * * * * * 3699 0 0 G 76 3596 * 5327 4263 * 1908 * * 2757 * * 1883 * 4920 3516 4859 * * * * 76 78 * 4256 * * * * 3555 0 0 L 77 * * * * * * * 4122 * 388 * * * * * 4770 * 3919 * 3721 77 717 * 1352 * * 0 * 3511 0 1369 N 78 3250 * * * * * 3408 * 3735 3464 * 1916 * * * 1434 * * * * 78 0 * * * * 0 * 3173 0 1962 E 79 * * 2299 3813 * 4481 * * * * * * 905 3751 3784 * * * * * 79 0 * * * * * * 3273 0 0 L 80 * * * * * * * 3836 * 793 4423 * * * * * * 2649 * 2767 80 0 * * * * * * 3273 0 0 K 81 * * * 4255 * * 3520 * 2026 * * * * 4450 1458 * 2767 * * 4103 81 0 * * * * * * 3273 0 0 L 82 * * * * 4450 * * * * 68 * * * * * * * * * * 82 0 * * * * * * 3273 0 0 V 83 * * * * * * 4255 * 1990 * * * * * 965 * 3151 3813 * * 83 0 * * * * * * 3273 0 0 K 84 * * * * * * * * 1561 * * * * 2691 1474 * 3756 3788 * * 84 0 * * * * * * 3273 0 0 V 85 * * * * 820 * * 2550 * 2383 * * * * * * * 3813 * * 85 0 * * * * * * 3273 0 0 N 86 * * 2125 3678 * * * * 3547 * * 2047 4255 * 3759 2767 3442 * * * 86 0 * * * * * * 3273 0 0 K 87 * * * * * 2374 * * 3745 * * * * * * 449 * * * * 87 0 * * * * * * 2636 0 0 R 88 * 3903 * * * 449 * * * * * * * * 2318 * * * * * 88 0 * * * * * * 2636 0 0 I 89 * * * * * * * 3745 * 4146 * * * * * * * 203 * * 89 0 * * * * * * 2636 0 0 L 90 * * * * * * * 3392 * 718 2049 * * 4180 * * * * * * 90 0 * * * * * * 2636 0 0 C 91 3662 1903 * * * * * * * * * * * * * * * 614 * * 91 0 * * * * * * 2636 0 0 V 92 * * * * * * * 2613 * 2345 * * * * * * * 644 * * 92 0 * * * * * * 2636 0 0 T 93 3597 3425 * 3540 * * * * * * * * * 848 * 3557 3355 * * * 93 0 * * * * * * 2750 0 0 S 94 * * * * * * * * * * * * * * * 141 3425 * * * 94 0 * * 0 * * * 2750 0 0 //