HHsearch 1.5 NAME d1u35c1 FAM FILE d1u35c1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1u35c1.a3m DATE Mon Mar 8 18:58:09 2010 LENG 106 match states, 106 columns in multiple alignment FILT 117 out of 213 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.4404 0.5670 SEQ >ss_dssp CCCHHHHHTCSSCHHHHHHHHHHHSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHSHHHHHHTTTCCCTTCCCCCCCCG GGSCCC >sa_dssp EEEDBEEDECECDADEBBEDBDEDEEEEECEEDDACEDADDDCECCDDCDEDADDBBEEDEDEEDDDCACCCBBCECEEBDEECEEDECEEAEEDEEEEE EEEEEE >ss_pred CCCHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHCCEEECCCCCCCCCCH HHHCCC >ss_conf 9652332276056999999986074214101348999999999999999999988775459704309999998616977888725857038981587688 872179 >Consensus xxsxsxraxLxfPvxRixrxlkxxxxxxrisxxapvxlaaxlEylxxeilexAxxxaxxxkxkxIxpxhixxAIxxdeeLxxLxxxvtixxggvxpxixx xllxkk >d1u35c1 KTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHP ELLAKK >UniRef50_UPI00015B431F(3-95:226) PREDICTED: similar to NC2alpha n=1 Tax=Nasonia vitripennis RepID=UPI00015B431F E=4e-12 s/c=0.78 id=20% cov=86% --SKKKKYNARFPPGRIKKIMQTDEEVGKVAQAVPIIISRTLELFVHSLLTKTMQITSAKQAKTLSPSHMKQCILSEsrfDFLKDLVKNLPDASG----- --------- >UniRef50_Q9CR04(21-82:117) Huntingtin-interacting protein M n=5 Tax=Eutheria RepID=HYPM_MOUSE E=3e-05 s/c=0.80 id=27% cov=59% ----SSRPEVQVPVNYVYRILQEEQYTPCIGSTTSDFLLAMLDYLTDYILEVVGSEANINNQQNIS---------------------------------- ------ >UniRef50_C5MET3(94-188:275) Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MET3_CANTT E=3e-10 s/c=0.69 id=23% cov=89% -----SQSNLTLPIARIKRIFKLDPDYAGASASAVYTAGLATELFVQYFVEQASLLAKMDKRKKIQYKDFANAVSAHDSLNFLSDTV--------PKTHP igELVQQK >UniRef50_B5DK13(121-205:1618) GA28770 n=7 Tax=Arthropoda RepID=B5DK13_DROPS E=5e-08 s/c=0.69 id=26% cov=77% --SKKKKSVL--PTERVHTLLQKDVLQYKIDSSVSAFLVAVLEYISADILKMAGDYVCKISHCEITKEDIEVVMNADRVLMDMLN--------------- ------ >UniRef50_A9TUW3(196-288:304) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TUW3_PHYPA E=2e-10 s/c=0.72 id=26% cov=75% -SSRAKKSQqslltLAFPISRVRRLVKSEGDIQWVGVEAGFLIAKATEIFLEKLVEDAFERMQGNGQASILYPHLSSHVASSERL--------------- ----------- >UniRef50_Q8SQT6(6-85:95) CLASS 2 TRANSCRIPTIONAL REPRESSOR similar NCB1_yeast n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQT6_ENCCU E=0.0008 s/c=0.56 id=27% cov=71% ----SQKKKLTrFPISRLKRIMQLNEDIGKIGASVPVVASKAIEMFLTEIVGLTLKEARKKSSSRMSSEFIIRATESDP--------------------- ------- >UniRef50_A8X3Y1(140-232:325) C. briggsae CBR-NFYC-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X3Y1_CAEBR E=8e-10 s/c=0.70 id=21% cov=53% -----------------------------IASDAPIFMAQAAEFFIEEMTAMGWQYVSEARRRILQKSDVATAVKKNEQFDFLL---------------- ------ >UniRef50_A7TGB9(39-118:120) Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TGB9_VANPO E=2e-06 s/c=0.67 id=21% cov=32% ------------------------------------------------------NVPKEMDCKRIIGKFIKQTILQDEKFDFLRKHI------------- ------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 941 * * * * 4547 1197 * * * * * 1 0 * * * * * * 3570 0 0 T 2 * * * * * * 5141 3402 3070 4754 3273 4932 * 1936 3673 2353 4350 * * * 2 0 * * * * * * 4048 0 0 S 3 4621 * * * * 4193 * * 5779 5209 * 5185 * * * 475 3152 * * * 3 0 * * * * * * 4452 0 0 R 4 * * * 5389 * 4473 4138 * 1537 4769 * * * 4982 1319 * 4045 * * * 4 0 * * * * * * 4533 0 0 S 5 3134 * * * * * * 4571 3000 * * * * * 4142 681 4693 * * * 5 0 * * * * * * 4789 0 0 A 6 1919 * 4611 5650 * * * * 2912 6036 * 5079 * 3485 4655 2060 3728 4242 * * 6 0 * * * * * * 4942 0 0 K 7 * * * * * 4933 * * 1327 * * * * 4420 938 * * * * * 7 17 6453 * 1000 1000 * * 5081 1000 0 A 8 905 5724 * * * 3900 * * 5572 * * 5516 5032 * * 2013 5868 * * 4580 8 0 * * * * * * 5153 0 0 G 9 6022 * 5728 3126 * 1133 4838 * 3438 * * 3079 5490 5094 * 4320 5278 5494 * * 9 51 4834 * 1840 473 * * 5202 1687 0 V 10 5779 * * * * * * 4056 5985 398 5217 6105 * * * 5005 * 3985 * 6457 10 42 6231 5993 2000 415 * * 5506 1000 0 I 11 4491 * * 6463 4611 5606 5461 3290 5163 4147 6430 5420 * 1810 4524 3418 2751 3882 * * 11 18 6302 * 0 * * 0 5689 1000 1000 F 12 5272 * * * 562 * * 4069 * 2310 * * * * * * * 5350 6501 * 12 0 * * * * 0 * 5820 0 1000 P 13 6070 5332 * * * * * 6065 5770 6509 * * 383 * 5975 3058 6233 * * * 13 15 6557 * 0 * * * 5821 1000 0 V 14 5181 5468 * * 7182 * 7062 3119 6578 3064 4132 * 5638 * * 7027 3876 896 * * 14 0 * * * * * * 5821 0 0 G 15 2012 6500 4872 6341 * 1569 * * 5607 * * 4357 * * * 2012 4636 * * * 15 0 * * * * * * 5946 0 0 R 16 * 5353 * 5584 * * 5518 * 3819 4880 * * 6668 4004 442 * * * * 5657 16 0 * * * * * * 5947 0 0 M 17 5584 6805 * * 3370 * * 1231 * 5484 4776 * * * * * 5608 1442 * * 17 0 * * * * * * 5947 0 0 L 18 5202 * 4608 2621 4507 4915 2313 * 1625 5951 * * * 6047 3452 6567 * * * 4898 18 0 * * * * * * 5961 0 0 R 19 5786 * * * * * 4820 6438 2069 6484 * 5041 6206 4589 952 4659 5424 * 6689 6588 19 19 6237 * 0 * * * 5961 1000 0 Y 20 6220 5791 * * 4278 * 5069 1694 6130 2085 5137 * * 5264 6432 5069 * 3845 3599 3642 20 15 * 6567 * * * * 5961 0 0 I 21 6021 6785 * * 5721 * * 3876 * 1012 1541 * * * * * 6397 4749 * * 21 38 * 5271 * * * 0 5954 0 1000 K 22 5570 6014 * * 6451 6601 5850 * 1322 6004 * * * 2477 2060 6248 6140 5121 4903 * 22 22 6030 * 514 1739 0 * 5935 1425 2184 K 23 3590 8014 3537 2407 * 5654 5843 * 2023 4095 6470 6456 * 4137 4446 3136 5072 5174 * * 23 30 * 5615 * * * * 5964 0 0 G 24 4119 * 1620 3801 * 1760 * 4933 5471 5141 5387 5510 * * 4021 6639 5369 5328 * * 24 12 6954 * 0 * 0 * 5916 1000 1000 H 25 6282 5062 4543 2964 * 6052 5334 5070 4179 6437 * 2761 3927 3498 2386 4050 4484 4275 * * 25 0 * * * * * * 5964 0 0 P 26 6264 * 2387 3839 5241 5456 4654 4745 4964 3221 5728 4955 5305 7449 5480 5684 4277 4742 * 2015 26 39 6720 5843 0 * * * 5964 1000 0 K 27 2059 4135 6493 * * 4059 4483 3245 5418 6438 * 5996 * 4994 4563 3184 4259 2601 * 5037 27 57 7415 4915 0 * 0 * 5920 1000 1000 Y 28 4775 6000 4819 4415 5294 3070 5193 6248 2419 5580 4158 4589 4175 4208 3485 5515 6850 4710 4509 3976 28 33 5447 * 1079 925 * 0 5840 2066 1000 R 29 * 3718 * * 5396 5712 6043 5379 2445 6448 3579 5156 * 5703 1209 5236 6607 * 6547 4799 29 22 6025 * 0 * 0 * 5860 1438 1000 I 30 5741 3316 * * 5347 * * 1416 * 3105 4605 * 6723 * * * 5863 1749 * * 30 33 * 5447 * * * * 5987 0 0 G 31 3505 * 4021 7094 * 2017 4329 * * * 6433 4392 * 5952 * 1209 6205 6670 * 6085 31 0 * * * * * 0 5960 0 1349 V 32 2106 4733 3824 4182 * 4949 6227 4975 4466 6410 * 4981 6247 2972 5247 2257 5195 5106 7461 * 32 0 * * * * * 0 5958 0 1349 G 33 3574 * 3098 2907 * 3413 5982 * 6967 6471 4777 4325 7205 4648 4949 2245 3319 6561 * 4328 33 0 * * * * * 0 5958 0 1349 A 34 692 6134 * * * 7039 * * * 5614 6410 * * * 4949 4416 2930 3103 * * 34 0 * * * * * 0 5958 0 1349 P 35 2757 6120 * * * 6466 * 5871 * 4412 6821 6170 1163 5126 * 2751 5073 3536 * * 35 0 * * * * 778 1263 6101 0 1349 V 36 4842 * 5625 * 3581 * 5104 2310 4938 3595 6897 * * * * 4918 * 1179 * 4969 36 0 * * * * * 0 6112 0 1000 Y 37 4713 6442 * * 2543 * * 4536 * 2191 6161 * * * * 5584 4595 4004 * 1403 37 0 * * * * * 0 6112 0 1000 M 38 4852 6368 * * 3584 * * 2814 * 1203 3525 * 4918 * * 5770 5368 2934 * * 38 6 8030 * 3000 193 * 0 6112 1000 1000 A 39 1250 6155 * * * 3655 * 4977 * 5625 * 5275 * * * 2136 2794 4771 * * 39 0 * * * * * 0 6112 0 1000 A 40 1000 5155 5322 * * 5031 * * 2393 4696 * * * 6139 3598 6553 5234 4576 * 6439 40 18 6324 * 4170 82 * 0 6188 1000 1000 V 41 1697 4590 * * 6537 4924 * 3111 * 5388 4838 * * * 5155 4195 4820 1673 * * 41 0 * * * * * 0 6188 0 1000 L 42 3724 3632 * * * * * 3285 * 1030 4325 4624 6409 * * 5546 3121 6298 * * 42 0 * * * * * 0 6188 0 1000 E 43 6135 * 4766 248 * 5155 * * 6827 * 6298 5949 * 5121 6324 * * * * * 43 0 * * * * * 0 6188 0 1000 Y 44 6573 * 6324 * 4218 * 6624 3361 6188 2496 4369 3740 * * * 6551 * * 6293 1064 44 0 * * * * * 0 6188 0 1000 L 45 * * * * 1437 * * 4020 * 1043 6040 * * * * 5155 * 4628 * * 45 0 * * * * * 0 6188 0 1000 T 46 3673 5885 * * * 5358 * 2708 * 2673 4509 * * * * 4096 1928 2285 * * 46 0 * * * * * 0 6303 0 1000 A 47 1915 5460 5819 2752 6916 4273 5024 5595 4347 4030 5690 7193 4497 4175 5681 3383 4479 5141 * 6661 47 0 * * * * * 0 6303 0 1000 E 48 * * 4094 963 6505 * 5437 * 3356 5410 * 3844 * 5326 4569 3608 5805 * * 4778 48 14 * 6742 * * * 0 6303 0 1000 I 49 5504 * * * 3529 * * 1900 * 1544 5959 * * * * * 5380 2057 * * 49 23 6012 * 0 * 922 1082 6290 1000 1319 L 50 3802 6806 * * 5709 * * 3367 * 1107 4320 7270 6856 * * 5169 3400 2849 6304 * 50 0 * * * * * 0 6298 0 1000 E 51 5323 6931 3755 893 * 4537 6928 5683 3482 4655 5306 * * 4688 6677 5174 4243 * * * 51 0 * * * * * 0 6360 0 1000 L 52 4807 4429 5011 3416 * 4542 * 5906 3696 1463 3563 * * 4651 3409 * 5000 4716 * 7448 52 0 * * * * * 0 6360 0 1000 A 53 874 * * * * 4470 * * * * * 5850 * 5060 * 2103 3482 4652 * * 53 29 5641 * 3044 186 * 0 6568 1533 1000 V 54 3557 5184 4852 * 4340 1368 5015 5271 6123 4764 5854 5292 * * * 4167 * 4508 3281 3995 54 0 * * * * * 0 6568 0 1000 N 55 6717 7087 4227 3492 * 5788 6113 4698 2947 4453 5761 1713 * 4096 4919 3752 3739 5348 * 7445 55 0 * * * * * 0 6580 0 1000 A 56 2473 6341 * 2881 6855 5639 4444 3830 6319 5099 5278 4479 * 3940 5223 4205 4899 2659 * 3707 56 0 * * * * * 0 6580 0 1000 A 57 921 5945 * * * * * 6142 * 5988 5209 * 4746 * 4957 3671 2327 4282 * * 57 13 6773 * 1000 1000 * 0 6580 1000 1000 R 58 5078 5546 5034 3786 * 6093 4572 * 2131 * 7012 4088 * 3146 2156 3554 6532 4354 6347 * 58 0 * * * * * 0 6478 0 1000 D 59 4165 * 2195 2977 6031 5192 6578 4429 2891 3390 5440 3343 * 4823 5342 4157 5311 * * 7302 59 0 * * * * * 0 6482 0 1000 N 60 5615 5825 3500 5319 6139 5269 3943 4546 3374 4563 6735 2312 4962 3833 3610 2923 4837 * * * 60 0 * * * * * 0 6482 0 1000 K 61 6576 * 6735 * * 2834 5189 * 1228 4962 * 2971 * 4653 3400 3630 6549 * * * 61 32 5490 * 547 1664 * 0 6482 1825 1000 K 62 3575 6735 * 6576 * 6597 4546 * 2070 4465 6674 * 6702 3853 1702 3435 4655 4984 * * 62 51 4841 * 361 2177 * 0 6482 1869 1000 G 63 5217 6138 * 4622 * 6411 * 6043 1261 * 4802 5410 * 4426 2617 3735 3342 7021 * 5392 63 14 6717 * 2322 322 * 0 6482 1000 1000 R 64 4962 5188 * 4546 6045 6280 * 5032 3734 4923 * 4407 * * 1466 3854 2358 4973 * 5281 64 0 * * * * * 0 6482 0 1000 V 65 * * * * 5845 * * 620 * 2411 4988 * * * * * * 3155 * * 65 18 * 6326 * * * 0 6482 0 1000 T 66 5275 * * 6617 * * 6073 3243 3673 4738 6055 3456 * 2859 4681 3030 1715 5834 * * 66 0 * * * * 633 1493 6423 0 1396 P 67 4157 * * * * 5016 * * 3445 3773 * 6061 1029 6064 4110 6253 6740 5711 * 2958 67 0 * * * * * 0 6325 0 1000 R 68 5318 4825 4468 3212 * * 5602 6010 3274 6516 * 5022 5829 3605 1718 3019 5608 5493 5902 5733 68 0 * * * * * 0 6325 0 1000 H 69 * * 1872 * 5468 * 791 6517 4867 4540 6563 5941 * * * * 6490 * * * 69 0 * * * * * 0 6325 0 1000 I 70 * 4867 * * 5536 * * 1500 * 1399 4233 * * 5902 * * * 2822 * * 70 0 * * * * * 0 6325 0 1000 L 71 3266 4453 4540 4506 5415 * 3664 5497 2585 4062 5313 4604 * 3231 4057 3132 4276 6173 * * 71 0 * * * * 0 * 6325 0 1000 L 72 4789 * 6364 3949 * 5706 4744 5478 4711 1705 4820 4006 * 3396 3855 3430 4424 4621 5546 * 72 0 * * * * * * 6332 0 0 A 73 545 3891 * 6432 * 4569 5830 * * * * * * * * 4360 5110 3347 * * 73 0 * * * * * * 6332 0 0 V 74 * * * * 6268 * * 1353 * 4325 4315 6009 6612 * 4877 6979 6260 1270 * * 74 0 * * * * * * 6332 0 0 A 75 3384 3987 * 4308 * 4240 4414 * 3027 3857 * 5123 4874 3896 2048 3991 * 6140 * 4315 75 7 * 7725 * * * * 6312 0 0 N 76 3670 6944 6702 5770 * 4146 5312 * 3186 * 5699 1423 * 4407 4137 2854 4074 * * * 76 19 * 6278 * * * 0 6262 0 1000 D 77 * * 935 5129 * * 4394 * 6129 4956 * 2967 * 5793 * 3138 3981 4993 * * 77 16 6539 * 1585 585 660 1445 6311 1000 1347 E 78 5036 * 3010 1439 4854 6231 * 6348 3540 5642 5492 5530 3246 4666 5176 6659 4285 4921 * * 78 0 * * * * * 0 6246 0 1000 E 79 * * 4645 1378 4438 5058 5035 5148 4751 4936 4272 6121 * 3537 4730 5478 4402 3366 * 6157 79 0 * * * * * 0 6228 0 1000 L 80 * 6655 * * 2159 * 6774 * * 597 6352 * * * * * 6447 5205 * 4471 80 54 * 4778 * * * 0 6079 0 1000 N 81 4684 * 1474 5070 * 4271 3670 * 4189 * 4717 2318 * * * 2983 5559 * * * 81 0 * * * * 652 1459 5835 0 1402 Q 82 5831 * 3396 5701 1395 6091 5802 6824 4241 6185 4740 5481 6574 2813 5222 3857 4293 7257 * 6171 82 0 * * * * * 0 5972 0 1000 L 83 6621 * * * 5253 * * 5976 * 284 3828 * * * * * * 4153 * * 83 31 5567 * 1585 585 * 0 5972 1000 1000 L 84 * 6362 * * 2001 5461 * 2397 5221 1823 5167 * * * 4399 4959 * 3463 * 5801 84 0 * * * * * 0 5829 0 1000 K 85 4118 * 2539 4037 * 3312 4124 * 1857 5446 * 3762 * 4401 3767 4657 5785 * * * 85 56 5763 5660 0 * * 0 5818 1000 1000 G 86 2978 * 2727 5714 4779 2172 4055 4577 4173 * 5565 3280 * 4990 4657 5771 4224 5629 * * 86 104 * 3851 * * * 0 5709 0 1498 V 87 5878 * * * * 5278 5278 2693 * 4193 * 5574 * * * * 3276 809 5207 * 87 149 5094 3864 2322 322 550 1657 5634 1000 2250 T 88 4761 3578 * * * * 6082 2587 * 4831 * * 4567 * * * 856 3872 * * 88 27 * 5731 * * 1574 591 5112 0 2251 I 89 * 5602 4513 5902 * * * 576 * 3384 * * * * * 5575 * 2931 * * 89 0 * * * * 2039 402 5061 0 2065 A 90 1595 5307 * 4594 * * * * 4829 * * * 2623 5002 5258 1966 3451 * * * 90 0 * * * * * 0 5090 0 1970 S 91 5031 * * 3269 6189 2703 3729 * * * * 3877 5590 2073 4300 2238 * * * 4888 91 0 * * * * * 0 5090 0 1970 G 92 4721 * * * * 264 * * * * * * * 4282 * 4272 * 5251 * * 92 55 * 4745 * * * 0 4565 0 1970 G 93 4866 * 4961 * * 144 * * * * * * * * * * 5116 * * * 93 51 4859 * 2585 263 1971 425 4119 1000 2258 V 94 * * * * * 4868 * * * * 4223 * * * 4762 * 4775 254 * * 94 0 * * * * 1978 422 4142 0 1873 L 95 * * * * 5331 * * 2362 3409 1257 3929 * 5226 4130 * * 5092 3484 * * 95 0 * * * * 985 1016 4059 0 1648 P 96 * * * * * * * * 5302 5394 * * 270 * * 3043 * * * * 96 45 5038 * 0 * * 0 4283 1000 1000 N 97 * 5369 * * 4138 * 2446 4857 3030 * * 2297 5101 * 2773 3543 5225 * * 3519 97 80 * 4208 * * * 0 4096 0 1000 I 98 * * * * * * * 573 * 3342 * * 4001 * * * 3186 4139 * * 98 0 * * * * * 0 3944 0 1672 H 99 3929 * * * * * 798 * 4878 4197 * 3040 * 3108 4917 * * * * * 99 48 * 4936 * * 0 * 3959 0 1672 P 100 3149 4712 4255 4361 * * * * 2267 * * * 1255 4109 5544 4579 * * * * 100 113 3731 * 1000 1000 0 * 4118 1000 1000 E 101 2458 * * 1547 * * 5079 4228 4626 * * * 4984 5829 * 2057 * 3995 * * 101 0 * * * * * * 3947 0 0 L 102 * * * * * * * 3346 * 287 4561 * * * * * * 4655 * * 102 0 * * * * * * 3893 0 0 L 103 * * 4535 * 4572 4798 * * 3875 461 * * * * * * * 3572 * * 103 63 4541 * 1000 1000 * * 3805 1000 0 A 104 2900 * * * 5421 5167 * * 2416 4945 * * 1229 3552 3589 * * * * * 104 0 * * * * * * 3795 0 0 K 105 * * * * * * * * 551 4105 * * * 3421 2592 * * * * * 105 0 * * * * * * 3646 0 0 K 106 * * * 4067 * * * * 418 * * * * 3909 2994 * * * * * 106 0 * * 0 * * * 3434 0 0 //