HHsearch 1.5 NAME d1u2ca1 FAM FILE d1u2ca1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1u2ca1.a3m DATE Wed Mar 10 19:24:40 2010 LENG 103 match states, 103 columns in multiple alignment FILT 101 out of 587 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4440 -0.3754 SEQ >ss_dssp CCCCCCCCCCEEEETTSCEEEECCHHHHCCTTEEEEEEETTSSSCCTTEEEETTTTEEEECCCGGGCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESS CCC >sa_dssp EEEEECECEECEBBBEDEBECEACBEEBCDEECDCDBBCDEEEECBEBBDBCEEDDBADCDAEEEBDCDCEABACABDDCEEDDEDEDCEBEBBADBDEE EEE >ss_pred CCCEEECCCCCEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEECC CCC >ss_conf 9857712665029838459983588777888504899942877686435895771189997087752659999999818887766642576799998308 889 >Consensus axPxixxipxxtaxxGxxfsxxixxxtfxxdxxxxxxxxxxgxxLPsWlxfdxxtxtlsGtPxxxxxGxxxixvtasDxxxxxxxxxxxsxvfxixVxpe xxx >d1u2ca1 AVPTVVGIPDGTAVVGRSFRVSIPTDLIASSGEIIKVSAAGKEALPSWLHWDPHSHILEGLPLDTDKGVHYISVSAARLGANGSHVPQTSSVFSIEVYPE DHN >UniRef50_UPI000186E4FB(463-550:1069) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186E4FB E=9e-06 s/c=0.58 id=20% cov=79% ------------ATAGKILRFKIPENTFSDvedgstSHLNLNFKNLDETPIPtnSWIKFDRKNQELLAIPLEEHVSKWEFIIEAKDK-----DGDIASDT FNLQI------ >UniRef50_B1ZQC2(3029-3114:3563) Conserved repeat domain protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZQC2_OPITP E=2e-05 s/c=0.58 id=24% cov=84% --PVIISNGTAIAQVGQPFQYAIASRSDS------AVTGYEAAGLPAWLTLNATTGVLAGIPSEPTSAPISASLSATNANGTGS-----TKVLQLTIIP- --- >UniRef50_Q12HS5(1896-1990:3089) Cadherin n=2 Tax=Shewanella denitrificans OS217 RepID=Q12HS5_SHEDO E=1e-07 s/c=0.61 id=21% cov=91% --PVITGVPATSVNQGATYSFVPTA----SDVDANSVLSFSIVNKPSWAAFDTSTGALTGTPTRSDIGSTSgIGISVSDGILSAQLPAFSLEVLSTNSAP ---- >UniRef50_A6AL55(320-412:1215) Putative EF hand domain/PKD domain protein n=1 Tax=Vibrio harveyi HY01 RepID=A6AL55_VIBHA E=8e-07 s/c=0.59 id=19% cov=86% --PTVSEIPQINLVTGKPGQHQVIASDKNGDALTYTL-----EGQPEWATITQS-GSLSFSPKTMDEGTYTFNVLVSDGSLTTTRVVTTKVALAMT---- --- >UniRef50_B3QUB4(459-553:1509) Ig family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUB4_CHLT3 E=4e-07 s/c=0.59 id=15% cov=92% --PSLPELKDLLVDEDKKLEYQIPEGSDPDREDEGKLTYV-AKNLPFGAVFDDKTRQFTWVPSFSQSGQYVVTIFVKDSNSDGNGILTDSKDLTIRV--- --- >UniRef50_B6IXZ1(4384-4487:5368) Putative Ig domain proteni n=5 Tax=Bacteria RepID=B6IXZ1_RHOCS E=4e-13 s/c=0.73 id=22% cov=96% --PTLANaIPDQQTDEDAPYSYTVPAGTFAdidvGDTLTYAATLGNGSPLPSWLSFNSATRTFSGTPLNEHVGTLTLRVTATDSGGASVSDSFVLTVRNV NDAPE--- >UniRef50_A3TZ88(7605-7709:12228) Cell wall associated biofilm protein n=2 Tax=cellular organisms RepID=A3TZ88_9RHOB E=9e-05 s/c=0.46 id=19% cov=56% --------------------------------------------LPEFITFTDNgdgTGLIRIEPGVGDRGEHAVRLVAFDDGGGQGIQRGDLYTFVIDV LSDN-- >UniRef50_B9XNP0(927-1024:1094) APHP domain protein n=1 Tax=bacterium Ellin514 RepID=B9XNP0_9BACT E=7e-06 s/c=0.53 id=19% cov=95% ATPTLIAISNYTINANQLLSFTTKAIDPDQPTQNLTYSIVTGA--PGGATIGPISGLFTWTPTLLQApGTNTIQVRATD---NASPAASALKSFTVIVVA PPH- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 188 * * * * * * * * * * * * * * 3036 * * * * 1 0 * * * * * * 3885 0 0 V 2 1037 * * * * * * * * 3608 * * * * * * 2700 1853 * * 2 0 * * * * * * 4168 0 0 P 3 * * * * * * * * * * * 5249 87 * * * 4962 * * * 3 0 * * * * * * 6014 0 0 T 4 5770 * * 3424 * * 5419 5155 3648 * 5809 * 5364 * 5021 5390 1867 1371 * * 4 0 * * * * * * 6072 0 0 V 5 * * * * 4238 * * 1148 * 3336 * * * 5026 * 5588 4383 1750 * * 5 0 * * * * * * 6081 0 0 V 6 4750 * 5924 3800 4297 5653 * 2852 5361 4984 * 4448 5426 5574 * 3210 2009 2618 * * 6 74 4315 * 637 1487 * * 6094 1600 0 G 7 3235 * 4358 4812 * 1459 * * 5995 * * 3906 4593 * * 1866 4400 * * * 7 87 4095 * 0 * * * 6423 2312 0 I 8 5201 * * * * * * 1688 * 2293 4757 5780 4169 * 4937 5987 3514 2240 * * 8 0 * * * * * * 6611 0 0 P 9 2429 * * 5728 * 2750 * * 5916 6307 * 5926 1108 6268 * 3370 5182 * * * 9 37 * 5295 * * * * 6641 0 0 D 10 3178 * 1728 4030 * 6298 * 4753 5680 * 5118 3387 5050 4369 5703 3628 3550 3864 * * 10 0 * * * * * 0 6654 0 1621 G 11 4003 * * 6314 * 4124 * 3277 6292 3268 * * 4890 2007 6035 3716 2425 3795 * 5979 11 17 6422 * 0 * 1081 923 6690 1000 1621 T 12 4714 * 6083 5384 * * 6014 3950 5049 4730 6227 3661 5059 6051 4828 2530 1481 3815 * * 12 0 * * * * 0 * 6726 0 1000 A 13 1127 * * * * 4956 * 3406 6042 3429 6366 * * 5692 6819 5933 4836 2211 * * 13 0 * * * * * * 6794 0 0 V 14 3480 * 4452 3663 6570 6161 * 4194 4251 4073 * 4007 5061 4705 3682 4801 2493 3085 * 4188 14 53 5152 7006 0 * * * 6794 1674 0 V 15 2300 6703 7002 2941 * * * 3383 * * 6292 * 6702 3198 6065 4848 3326 1875 * * 15 15 6591 * 1000 1000 * 0 6799 1000 1000 G 16 5862 * 3319 4760 * 554 6250 * 6444 * * 3193 * 6599 * 5605 * * * * 16 0 * * * * 0 * 6831 0 1000 R 17 2986 5602 4825 3829 5270 7075 6263 4543 2938 6142 * 6038 * 2773 3331 3973 3279 3997 6160 6711 17 13 * 6785 * * * * 6822 0 0 S 18 2746 * 6081 4001 6594 * 6682 4431 5333 2563 6035 5625 2683 * 4861 2815 3758 3805 * * 18 0 * * * * 0 * 6821 0 1000 F 19 4662 * * * 1299 6302 * 3903 * 2794 6814 * * * * 4600 6393 5358 5487 2173 19 19 6262 * 0 * * * 6900 1110 0 R 20 * * 6803 3510 5494 6166 4530 * 5190 5282 * 2929 * 3921 3759 1541 2924 6395 * 6338 20 85 5266 4987 1203 822 * * 6900 1554 0 V 21 * * * 6542 1343 * 4880 3492 * 3422 * * * * * 6442 6244 4401 5691 1798 21 25 6616 7180 0 * * 0 6909 1000 2249 S 22 3978 * 4683 5076 * 5223 6079 6376 2994 6236 * 4386 3942 2698 4635 3327 2195 4316 * * 22 45 * 5038 * * 1299 752 6916 0 2574 I 23 6311 * * * 3659 6296 * 1595 * 2286 6800 * 6337 * * * 6238 1623 * * 23 79 6311 4615 0 * 833 1188 6915 1000 2937 P 24 2650 * 4601 5848 * 6147 5874 * 4343 * 6101 6756 1270 4734 6621 2859 3818 7194 * * 24 33 6518 6434 0 * 1780 497 6890 1000 3094 T 25 1512 * 3518 3995 * 4458 6273 6170 5031 * * 3671 3348 4909 5430 3637 4048 6537 * 6416 25 34 6506 6308 2807 222 1597 579 6877 1000 2905 D 26 4918 * 1926 4103 6536 4186 * 5579 * * 5603 2603 * 4910 6434 3118 2711 6252 * 4383 26 22 * 6038 * * 2214 350 6864 0 2686 L 27 3256 * 2194 * 6430 6350 * 4705 * 4438 * * 5451 5824 * 3285 1380 4608 * * 27 13 * 6808 * * 2356 314 6850 0 2800 I 28 4038 * 3265 * 948 * * 4861 6261 * 6617 5457 3662 6651 * 5710 4065 4415 * 5524 28 100 3907 * 1970 425 2214 350 6849 3314 2805 A 29 3481 * 2352 4633 5560 * 6059 * 4731 4874 * 4165 5355 5565 4435 2560 3364 3590 5552 4385 29 190 3436 4999 1778 497 1895 452 6862 3600 2484 S 30 4194 * 1825 5635 6518 1421 6625 * * 6275 * 3789 * 6310 * 2730 * * * * 30 61 4591 * 1265 776 966 1035 6831 2409 3074 S 31 3897 * 1293 3681 * 4104 * * 6107 * * 4080 3849 4569 4779 3962 3631 5483 * * 31 11 6987 * 1000 1000 1585 585 6883 1000 2039 G 32 3430 * 3665 2990 * 2839 6411 4224 4099 5332 * 4617 4460 5496 4860 3910 2680 4356 * * 32 99 3913 * 1895 452 * 0 6884 2859 1543 E 33 4265 * 2388 4910 6788 4607 5559 4272 5618 1700 * 4443 5325 6346 * 4322 5776 3046 * * 33 0 * * * * 1048 953 6884 0 1543 I 34 4889 * 5078 5426 * 3220 6512 6252 5487 * 6627 3979 5048 4897 3708 2726 1844 4062 6845 4393 34 61 4910 6905 1797 490 * 0 6891 2225 1000 I 35 5462 * 7216 * 2383 4728 * 5288 6233 1842 * 4870 5742 * * 5385 4567 5374 * 1835 35 0 * * * * 1034 967 6892 0 1558 K 36 3009 * 5380 3704 6272 * * 6248 2916 6276 6418 5484 5509 3899 6827 2054 2421 6482 * 4920 36 42 5120 * 1921 442 * 0 6909 2205 1000 V 37 2282 * * * 3655 5019 * 4220 * 1992 5551 * 5086 * * 5315 6276 2492 5210 3549 37 89 6470 4374 3000 193 * 0 6909 1000 1000 S 38 3810 * 4666 * 5183 * 5667 6483 3732 3762 * 6533 * 4815 5415 1854 1954 4675 6249 5310 38 140 5478 3839 2266 336 1499 630 6880 1664 2992 A 39 3883 * 5303 4438 4363 3391 * 4277 * 2065 5371 4364 6353 5339 5522 2731 4157 5372 * 3967 39 101 4941 4834 2487 283 3159 171 7074 2243 3586 A 40 2252 * * 3538 6163 4182 * 5622 4033 3469 5182 5042 5263 4529 * 3599 3985 2856 * 4260 40 140 6706 3590 1000 1000 3059 184 6832 1000 3691 G 41 6285 6091 2253 5210 * 2701 5943 * 4800 5840 * 2473 4147 * * 2684 3879 4259 * * 41 75 6683 4601 1000 1000 3486 135 6970 1000 4474 K 42 2569 * 4517 4621 6284 1137 6316 6053 4850 6207 * 4966 4679 * * 4138 5374 4269 * * 42 168 * 3185 * * 1757 506 6933 0 4771 E 43 2973 * 4442 3094 5009 3122 5133 4722 4691 6232 * 5048 6183 4545 5491 2352 3461 4882 * 6001 43 55 * 4742 * * 1768 501 6973 0 5023 A 44 3163 * 4578 4033 6485 2663 * 5917 3998 5569 * 3119 2666 4622 6349 3674 3331 6291 * * 44 95 4726 5279 2040 402 1979 422 6994 2116 4677 L 45 4245 * * * 5946 5339 * 3316 5981 608 * 6307 * 6696 * 5448 * 3489 * * 45 60 4958 6848 2772 228 302 2404 7019 1548 4555 P 46 6525 * * 6485 * * 6427 6394 6432 4551 * * 295 * * 4467 5173 * 6351 * 46 128 3702 6926 1067 936 * 0 6900 2877 2324 S 47 2833 * 3742 6127 6359 3623 5671 * 5497 * * 4631 4561 5388 4360 1313 3864 6802 * * 47 31 5535 * 1000 1000 691 1394 6892 1607 2537 W 48 5880 * 6084 * 5590 2092 * * * * * 6359 * * * * * 6266 540 * 48 60 5880 5399 1585 585 * 0 6917 1000 1559 L 49 3124 * * * 5235 6365 * 2837 * 1055 3211 * * * * * 7175 3176 * * 49 22 * 6049 * * * 0 6889 0 2701 H 50 4298 * * 3432 7127 4883 4403 7175 4483 4540 6838 4442 * 2858 5309 2406 2384 4093 * 5895 50 30 * 5580 * * 1200 824 6865 0 2917 W 51 * * * * 877 5820 * 2575 * 2910 * * * * * * * 5630 4596 3729 51 35 6642 6190 1585 585 2079 390 6878 1000 2875 D 52 5801 * 1031 4558 * 4239 5361 * * * * 2055 * * 6412 3899 4944 5570 * * 52 31 * 5547 * * 362 2172 6875 0 2824 P 53 3200 * 3449 4374 * 4204 * 6479 4939 * * 4850 2013 4095 6420 2637 3170 5115 * * 53 35 * 5392 * * 624 1510 6891 0 2008 H 54 2508 * 4527 3043 * 3845 6255 5547 3487 * * 4430 6121 4172 5595 2494 3064 4953 * * 54 18 6326 * 1585 585 552 1652 6887 1000 2308 S 55 4447 * 6862 6087 * 5300 * * 5014 * 5604 3486 * 5651 4884 2256 1035 6219 * * 55 17 * 6417 * * 0 * 6915 0 1000 H 56 5216 * * * * 1398 4300 6852 4845 3911 * 3696 6489 2961 2641 4558 6217 * * * 56 25 5844 * 1000 1000 * 0 6905 1117 1000 I 57 3920 * * 3738 * 6396 * 4447 4724 2998 7177 5396 * 4636 4781 4471 1309 3774 6758 * 57 0 * * * * 0 * 6905 0 1000 L 58 * * * * 2027 * * 2159 * 1345 5672 * * * * * 6096 3484 6228 * 58 0 * * * * * * 6923 0 0 E 59 6491 * 5157 4883 4848 6228 6390 6496 * 5517 5986 6340 * 4514 4102 1462 2432 5029 * 2999 59 0 * * * * * * 6923 0 0 G 60 4485 * * * 4803 560 * 6114 * 4367 6422 * * * * * * 5239 3186 5035 60 12 6859 * 0 * * * 6923 1000 0 L 61 4634 * 6596 5984 5021 * * 3469 4820 2929 5331 4558 * * 5343 4380 1306 3611 * 5672 61 18 7240 7500 0 * * * 6923 1000 0 P 62 3707 * * * * * 6406 7031 6365 * * 6590 297 * * 5308 6197 5139 * * 62 0 * * * * 0 * 6937 0 1000 L 63 3339 * 3940 7885 5786 4227 * 6327 6439 2742 5704 * 3152 4194 6504 3023 1908 * * * 63 103 4716 5028 1111 897 * * 6922 2044 0 D 64 2763 * 3604 2583 5235 * * 4619 3456 4310 * 4562 4050 4562 5068 2955 5307 5316 6693 5015 64 112 6149 4049 0 * 1500 629 6897 1000 2185 T 65 3697 * 2716 2781 5364 2928 5446 4827 4729 6197 * 4213 5451 6205 5324 2659 3731 6503 * * 65 48 * 4935 * * 1812 483 6884 0 3321 D 66 3738 * 1518 4117 4361 4633 3993 6768 * 6234 6485 4387 * 2704 * 4543 4382 6607 * 5035 66 14 6660 * 0 * 643 1475 6892 1000 3440 K 67 2384 * * 4585 * 5414 * 3402 4525 3391 * 6589 5089 5308 * 3446 4005 1781 * * 67 58 5162 6426 0 * 0 * 6889 1656 1938 G 68 5692 * 6304 5550 * 342 * * 6163 5633 * * * 6145 4810 4580 4954 * * * 68 32 5507 * 1147 867 0 * 6894 1568 1000 V 69 3545 * 4844 4311 * * * 5148 4211 * 5124 3679 4966 4243 5542 2146 1998 4116 * * 69 45 5323 7397 1448 659 * * 6904 1635 0 H 70 4080 * 6374 4825 3374 * 2596 5556 4926 4091 5663 3817 6473 5773 5958 6384 4760 5815 5451 1771 70 51 5500 6305 0 * * 0 6886 1964 1000 Y 71 3778 * 4093 3312 * 6502 6337 * 6511 6775 * 3088 6206 3869 3552 3244 2502 4176 * 3294 71 59 4947 7013 0 * 952 1049 6850 1836 1499 I 72 6425 * 6771 * 2781 * * 1569 * 3400 6293 5967 * * * * * 1752 * 3709 72 0 * * * * * 0 6864 0 1489 S 73 5231 6303 6446 4009 * 5660 * 4610 3628 4029 5356 4755 6274 3574 4618 2649 2076 3496 * * 73 0 * * * * * 0 6857 0 1489 V 74 6476 * * * 3809 * * 1982 * 2154 * * * * * * * 1185 * * 74 0 * * * * * 0 6857 0 1489 S 75 4651 * * 4110 6384 * * 3388 3920 4692 * * * 5583 3602 3302 1282 3751 * * 75 46 6236 5798 2585 263 951 1051 6857 1000 1489 A 76 785 * 6400 * * 4431 * 4470 * * * * * * * * 4914 1821 * * 76 0 * * * * * 0 6819 0 2177 A 77 6132 * 6169 6315 * 6249 * 4040 3728 5418 * 4495 * 6160 4505 1624 1791 3819 * * 77 34 6878 6048 0 * * 0 6819 1000 2177 R 78 5413 * 403 6431 * 4897 * * 6388 * * 3289 5809 * 5429 5657 * * * * 78 200 * 2951 * * 1087 918 6792 0 2684 L 79 3769 * 4518 4458 6085 1832 * 5164 2987 4900 6120 5639 3961 5796 5865 2970 5650 3968 * 6791 79 150 5928 3605 0 * 2215 350 6662 1000 4307 G 80 3179 * 4447 6592 4176 1931 4275 4559 5172 5805 * 4241 * 5926 4624 2606 3937 4767 * * 80 191 * 3014 * * * 0 6707 0 4542 A 81 2332 * 5596 4153 5934 1976 * 6218 * 3652 * 2891 3808 5384 * 5488 4259 4509 * 6326 81 80 * 4220 * * 3802 107 6482 0 5014 N 82 3633 * 3533 * 5151 4341 * * 4689 3062 * 2773 6180 5081 4037 2286 3028 5730 * * 82 57 * 4691 * * * 0 6348 0 5250 G 83 2921 5246 4584 5397 * 2909 * 4274 5837 * * 5296 6038 5407 * 2042 2683 3171 * * 83 38 * 5264 * * 1233 799 6312 0 5295 S 84 3544 * 3810 4595 4579 3624 * * 4622 * * 3168 5530 3995 * 1544 3790 5197 * * 84 125 * 3587 * * 1685 537 6598 0 4588 H 85 4161 * 2797 3545 4855 5597 3574 5654 4997 3625 3567 4845 4303 3361 * 5504 3420 5853 * 4535 85 79 * 4221 * * 1217 811 6614 0 4625 V 86 4938 5781 6601 4571 * 1615 * 4533 5444 4297 * * 3240 3621 3602 5651 5846 2769 * * 86 0 * * * * 1189 833 6683 0 4234 P 87 2496 * 5566 * * 4157 6180 * 6200 3228 5748 3816 2951 4709 4723 3445 2692 4956 * 4735 87 25 * 5870 * * 2845 216 6740 0 3189 Q 88 3497 * 4859 3135 2561 * * 5599 3996 5857 5530 5716 5940 3993 4851 2469 2902 5363 * * 88 72 5795 5030 0 * 848 1170 6675 1000 3255 T 89 1887 * 4539 4649 * * * 4457 * 6055 * 6255 * * * 3245 2207 2134 * 5430 89 0 * * * * 2272 335 6722 0 2844 S 90 3598 * 6031 5170 5898 * * 4020 3664 3683 * * * * 4836 1371 2633 6070 4592 * 90 0 * * * * 1799 489 6746 0 2513 S 91 5972 * 1595 3869 5401 * * 6430 3263 * 4457 4440 5762 3848 * 3681 3161 4287 * 5335 91 0 * * * * * 0 6660 0 2028 V 92 4852 * 3579 * * * * 4807 5434 3811 * 5332 * 4314 * 3717 2396 1284 * * 92 74 4328 * 0 * 0 * 6660 2022 2028 F 93 5674 * * * 611 * * 4922 * 2923 * * * * 6402 * 3365 5556 * 5029 93 0 * * * * * * 6659 0 0 S 94 4021 * 3516 5512 * * * 5150 4268 * * 3087 * 4933 4453 2405 1909 3934 * 4951 94 0 * * * * * * 6659 0 0 I 95 * * * * 5859 * * 1427 * 2360 4109 * * * * * 4965 1698 * 5814 95 24 * 5929 * * * * 6629 0 0 E 96 4835 * 4104 3298 * * 4406 4799 4049 4746 * 2235 * 4033 4542 5315 2015 4816 * * 96 0 * * * * 0 * 6555 0 1000 V 97 * * 4405 * 6289 * 4814 3232 * * * * * * * 4281 * 422 * * 97 0 * * * * * * 6525 0 0 Y 98 2258 * * 4940 * 4213 * 3614 4265 3673 * 4035 4956 4927 * 3831 4963 2149 * 4707 98 0 * * * * * * 5844 0 0 P 99 4692 * * 4698 * * * * * * * * 291 * * 4743 4662 5138 * * 99 0 * * * * * * 5501 0 0 E 100 * * 3185 794 * * 3950 * * * * * 3899 2461 * * * * * * 100 0 * * * * * * 4705 0 0 D 101 * * 1187 * * 3164 * * 3121 * * 3351 2905 3282 * * * * * * 101 0 * * * * * * 3909 0 0 H 102 * * * 2640 * * 961 * * * * * * 2543 * 2696 * * * * 102 0 * * * * * * 3303 0 0 N 103 * * * * * * * * * * * 1965 * * * 1033 1970 * * * 103 0 * * 0 * * * 2581 0 0 //