HHsearch 1.5 NAME d1u0sa_ FAM FILE d1u0sa_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1u0sa_.a3m DATE Tue Mar 9 22:47:06 2010 LENG 86 match states, 86 columns in multiple alignment FILT 58 out of 62 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4573 1.5221 SEQ >ss_dssp CCEEEEEEEECCTTCSSHHHHHHHHHHHHHHTTCEEEEEESCHHHHHTTCSSSEEEEEEEESSCHHHHHHHHHTSSSCSEEEEEEC >sa_dssp EEDCACACACADEEBEECCDCAEDACDCAEECEBEDDECECDDDDBEDDDCECDACACACADCDDDEACDAAEEBEDBEECCCEEE >ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEEEEC >ss_conf 97189999998689876357788999978533878999508988950486687599999927998999999853997012898879 >Consensus GxxxyxixvxlxxxcxlKxvRaxlVxxxLeelxGeIixsxPxxexiexxxfxxxfxvxxxtxxxxxxixxxixxvsEIxxvxVxxi >d1u0sa_ GFKTFYIKVILKEGTQLKSARIYLVFHKLEELKCEVVRTIPSVEEIEEEKFENEVELFVISPVDLEKLSEALSSIADIERVIIKEV >UniRef50_Q1CXR4(366-448:857) Histidine kinase DifE n=4 Tax=Cystobacterineae RepID=Q1CXR4_MYXXD E=0.0002 s/c=0.57 id=22% cov=92% ------VRLRIAPTCQVPGVRAFLVHKRLTNL-GTLVELRPALEELKAGRIpDGNIQLELETPAGEAGIHAALKNVAEVEVLSVKP- >UniRef50_A8U609(167-251:687) Chemotaxis histidine kinase, CheA (Contains CheW-like adaptor domain) n=5 Tax=Lactobacillales RepID=A8U609_9LACT E=4e-14 s/c=0.93 id=27% cov=100% GYNAYVLAIRIDEESSMKNARVYLVMSKLEQ-HGDVLYSEPGTEALENDDFGTIFKLIYVSKLDEETVLNLALDNSEIAEVLIQTI >UniRef50_Q0W7Z2(166-250:653) Chemotaxis histidine kinase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W7Z2_UNCMA E=4e-15 s/c=0.97 id=26% cov=100% GSKEFEVVVTVEKSCEFKGIRAFLVIQQLSEI-GKVASTVPDIKDIEDERFGQEFTVLLQSDRTAGEIEKKARNVAEIGAAKVTEI >UniRef50_C1A888(172-253:659) Chemotaxis protein CheA n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A888_GEMAT E=1e-12 s/c=0.90 id=23% cov=97% --AARVVEIRLSDDCPLKGVRAMIVAAKLGAL-GQVGQATPPQERWQDDAFDGVFSVLLTSDAGDDALVDAARSAGDVARVQVRA- >UniRef50_Q67P71(169-250:710) Two-component sensor histidine kinase involved in chemotaxis, CheA n=1 Tax=Symbiobacterium thermophilum RepID=Q67P71_SYMTH E=3e-12 s/c=0.89 id=13% cov=97% GLNVYQARLEIAPDAAMPAVRAFQALLAVGDI-GEIVLSVPTQEQVENDQVGSDMKLLFVTRESLQKVQDVLREVPEMAVRTL--- >UniRef50_C8WWG9(155-241:664) CheA signal transduction histidine kinase n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WWG9_ALIAD E=6e-11 s/c=0.79 id=12% cov=100% GKELYTVHIRLAPDCVMPGVRLAMAYQALKASA-ILMAAHPAEENVMAGQVEatEAFAAVMVAPGEIDRVRQGVLDVTDVSSCEVSKV >UniRef50_C7P7C7(352-434:969) CheA signal transduction histidine kinase n=4 Tax=Euryarchaeota RepID=C7P7C7_METFA E=7e-12 s/c=0.86 id=26% cov=98% GYKLYHLKAKVEDECLLKSARLSMVLTRIKNV-GEILLSRPTEGELKEQPFE-ELEVMFLSDKSVDEIQKELENIPEIDYIAISP- >UniRef50_Q2FMT1(168-251:1010) CheA signal transduction histidine kinases n=4 Tax=cellular organisms RepID=Q2FMT1_METHJ E=7e-08 s/c=0.69 id=25% cov=94% ---TYTITFSLADNVDNKNLRGMLILQNLESI-GEIVTCSPERTIVEdDENFTGNVTLEFRTNAGKSAIE-TILGVSDIKTRTISE- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 4414 0 0 F 2 * * * * 2036 5256 4573 4924 4007 3312 3101 * * 4635 * 3441 * 4660 * 2296 2 0 * * * * * * 4523 0 0 K 3 3302 * 4475 4640 * 5192 4748 * 1731 * * 2353 5283 5606 3395 3485 5545 * * * 3 0 * * * * * * 5056 0 0 T 4 1678 * * 5097 * * * 3392 * 3430 * * 5609 * 4417 3974 3218 2109 * * 4 0 * * * * * * 5159 0 0 F 5 5204 * * * 3485 * 5707 4691 * * * * * 5655 5231 * 5146 4358 4181 628 5 0 * * * * * * 5240 0 0 Y 6 * * * 2580 * * 2621 5273 2651 5953 * * * 3594 3273 5277 3161 3438 * 4243 6 0 * * * * * * 5284 0 0 I 7 5455 * * * 5546 * * 1291 * 2286 * * * * * * 5859 1623 * * 7 0 * * * * * * 5400 0 0 K 8 3472 * 3513 3308 * * 3589 6007 2309 5366 * 4038 * 5398 2420 4647 3924 5694 * * 8 0 * * * * * * 5400 0 0 V 9 3703 * * * 4631 * * 2034 * 3634 * * * * * 5567 * 897 * * 9 0 * * * * * * 5400 0 0 I 10 4933 * 4136 2924 5851 * * 3947 2516 6177 * 5401 * 4380 3085 3916 2786 6125 * 3431 10 0 * * * * * * 5400 0 0 L 11 * * * * 3305 * * 1786 * 1139 * * * * * * * 2691 * * 11 0 * * * * * * 5400 0 0 K 12 2233 * 2047 2989 * 5323 6151 * 6196 * 6245 6198 * 4559 4260 2565 4631 4804 * * 12 0 * * * * * * 5400 0 0 E 13 5164 * 2699 1950 * * 5627 * 2784 * * * 1793 3611 * 5415 * * * * 13 0 * * * * * * 5400 0 0 G 14 5892 * 1469 2358 * 2976 * * * * * 2605 * 6035 * 3333 5585 * * * 14 0 * * * * * * 5400 0 0 T 15 2692 930 * * * * * * * * * * * * * 3285 3291 3113 * * 15 0 * * * * * * 5400 0 0 Q 16 3595 * 3507 5694 * * * 3838 * 1986 3078 * 2705 3391 * 5878 5786 3549 * * 16 0 * * * * * * 5400 0 0 L 17 * * * * 4641 * * 4556 * 935 1695 5506 * * * 5415 * 4645 * * 17 0 * * * * * * 5400 0 0 K 18 * * * * * * * * 377 * 5488 * 3172 * 3368 * * * * * 18 0 * * * * * * 5400 0 0 S 19 1613 * 4729 4556 * 2007 * * * * * 3629 * * * 1926 * * * * 19 0 * * * * * * 5400 0 0 A 20 1843 * * * * * * 4740 * 2916 * * 4944 * * * * 947 * * 20 0 * * * * * * 5400 0 0 R 21 * * * * * * * * 4556 * * * * * 63 * * * * * 21 0 * * * * * * 5400 0 0 I 22 742 * * * 3830 4630 * 6196 * 3596 5859 * * * * 3828 5883 3468 * * 22 0 * * * * * * 5400 0 0 Y 23 4423 * * * 1598 * * 4114 * 4679 3531 * * * * 4579 3741 4334 * 1871 23 0 * * * * * * 5400 0 0 L 24 * * * * * * * 4770 * 1066 1170 * * 5455 * * * 5775 * * 24 0 * * * * * * 5400 0 0 V 25 3849 4961 * * 5566 * * 1986 * 3996 * * * * * * * 831 * * 25 0 * * * * * * 5400 0 0 F 26 4633 * * * 2011 * 5585 2381 * 1721 3994 * * * * * 5874 3498 * 5209 26 0 * * * * * * 5400 0 0 H 27 5445 * 6063 2532 * * 4504 * 2260 5455 * 3796 * 1937 5542 2970 4990 * * * 27 0 * * * * * * 5400 0 0 K 28 2425 * 2948 4925 * 5859 5874 6066 3034 * * 2581 * 5694 3090 3172 4384 5851 * * 28 0 * * * * * * 5400 0 0 L 29 4807 * * * * * * 3372 * 341 5675 * * * * * * 4095 * * 29 25 * 5883 * * * * 5400 0 0 E 30 3736 * 4633 1303 * 4023 * * 2108 * * 6115 * 4341 3999 4690 5578 * * * 30 0 * * * * 0 * 5395 0 1000 E 31 3582 * 3627 1291 * 4339 * * 3256 * * 2586 * 4165 * 4739 6265 * * * 31 252 5567 2843 0 * * * 5400 1000 0 L 32 5641 * * * 3843 * * 2276 * 1498 3477 * * * * 3576 5540 2693 * * 32 2478 * 285 * * 0 * 5336 0 3201 K 33 2531 * 2658 * * 2577 3111 * 2113 * * * * * 3278 4296 * * * * 33 233 * 2743 * * 0 * 4120 0 5288 C 34 * 3981 * * 5357 189 * * * * * * * * * 5809 * 5847 * * 34 0 * * * * 0 * 5338 0 1799 E 35 5707 * 3162 1272 * * * 4157 4129 * * 5674 * 4063 4710 4517 2866 5323 * 5766 35 0 * * * * * * 5400 0 0 V 36 5401 * * * * * * 1155 * 3067 * * * * * * * 1294 * * 36 0 * * * * * * 5400 0 0 V 37 4263 * * * 5323 5445 * 1145 * 2959 5209 * * 4896 5786 5892 * 2160 * * 37 0 * * * * * * 5400 0 0 R 38 5209 * 5767 3556 * 4053 4278 * 1463 3718 * 6552 * 3863 3510 3332 5506 * 6209 5878 38 0 * * * * * * 5400 0 0 T 39 4322 4803 * * * * * 5775 * 3969 * * * * * 1117 1671 4131 * * 39 0 * * * * * * 5400 0 0 I 40 5707 5767 3997 2750 5851 * 5209 3070 3956 5547 * 3639 * 4708 4127 4050 3740 2389 * * 40 0 * * * * * * 5400 0 0 P 41 * * * * * * * * * * * * 0 * * * * * * * 41 0 * * * * * * 5400 0 0 S 42 3423 * 2861 4414 * 4078 6272 5627 5415 * * 5144 2723 * * 1780 2883 * * * 42 0 * * * * * * 5400 0 0 V 43 3049 * * 2134 * * * 3558 5766 4448 * * * 3903 2828 6063 4032 2507 5366 5767 43 0 * * * * * * 5400 0 0 E 44 * * 3137 723 * 4236 * * 5694 * * 5547 * 3880 * 3669 5506 5770 * * 44 0 * * * * * * 5400 0 0 E 45 3898 * 1895 1607 * 5566 * 4071 4551 4830 * 4461 * 4653 4597 5401 * 5204 * * 45 0 * * * * * * 5400 0 0 I 46 * * * * * * * 1172 * 1461 3699 * * * * * * 3427 5445 * 46 59 * 4650 * * * * 5400 0 0 E 47 * * 3762 623 * * * * 3290 4159 5158 * * 3460 * * * * * * 47 71 4372 * 0 * 0 * 5346 1695 1476 E 48 3138 * 1602 3692 * * * * 3416 5892 * 2546 * 3924 6097 3895 5032 5675 * * 48 68 5415 5488 0 * * * 5400 1000 0 E 49 * * 3055 1377 5509 1439 * * 5645 * * * * 5882 * 4471 * 5528 * * 49 0 * * * * 0 * 5368 0 1000 K 50 4243 * 2909 4626 * 4687 * * 2458 * 4450 2479 5891 3125 3839 4620 3547 * * * 50 121 5767 4010 0 * * * 5400 1000 0 F 51 4610 * 5280 * 677 * * 3966 * 3593 * * * * * 5552 * 3765 * 3921 51 182 3077 * 569 1618 0 * 5324 2899 2225 E 52 5848 * 1308 2539 * 2234 5547 5767 4556 * * 5415 * * * 5851 5506 5323 * 5366 52 118 4507 4866 706 1370 * * 5400 1639 0 N 53 5886 * 4943 3207 4299 2182 4436 * 4333 3738 * 3629 * 3904 5781 3978 2675 6120 * * 53 33 * 5463 * * 0 * 5378 0 1485 E 54 4452 * 3238 2019 4780 3929 5634 5871 4867 * * 4142 * 4888 4158 2422 5136 4376 * 5764 54 59 4639 * 0 * 0 * 5445 1739 1000 V 55 4601 * * * 961 * * 2563 * 2907 4435 * * * * * * 3377 * * 55 0 * * * * * * 5400 0 0 E 56 3804 * 3008 1904 * * * 4350 3313 * * * * 4104 4618 3003 2898 * 6097 6066 56 0 * * * * * * 5400 0 0 L 57 3463 * * * 5180 * * 2481 * 1933 4771 * * * * * 6265 1355 * * 57 0 * * * * * * 5400 0 0 F 58 5165 6198 * 4012 3808 * * 3905 6209 1527 5891 * * * * * 4277 2767 5566 2631 58 0 * * * * * * 5400 0 0 V 59 5848 * * * 2681 * * 2776 * 1985 3405 * * * * * * 2254 * 3012 59 81 * 4192 * * * * 5400 0 0 I 60 3220 * 4669 3644 * 6134 5635 3283 5991 3176 * 3787 * 4247 4712 3648 5290 2051 * * 60 0 * * * * * 0 5338 0 1778 S 61 3932 * * * * 5272 * * * 5991 * * * * * 1284 1208 * 5224 5471 61 48 * 4927 * * 0 * 5338 0 1778 P 62 4851 * 2104 3605 * * 5147 * 2281 * 6066 4632 3610 * 3080 3240 4987 5393 * * 62 27 * 5762 * * * 0 5368 0 1000 V 63 2919 * 4270 2011 5502 2849 * * 4961 3463 * * * 3664 4069 3915 * 3654 * * 63 24 5906 * 1000 1000 0 * 5365 1000 1572 D 64 * * 1926 3138 * 3209 * * * 5770 * 4260 2964 * * 2123 3526 * * * 64 0 * * * * * * 5400 0 0 L 65 2749 * 4025 2979 5589 4964 * 3446 3882 3385 6563 5547 3605 4727 6069 4007 6245 3316 * 6348 65 0 * * * * * * 5400 0 0 E 66 4645 * 2001 1499 * 4629 5566 * 4956 5859 5842 5004 5547 4751 5366 3578 * 6543 * 5674 66 0 * * * * * * 5400 0 0 K 67 3001 * 2822 2300 * 5585 * * 2244 * * 4454 * 5323 3671 4422 3881 4840 * * 67 0 * * * * * * 5400 0 0 L 68 * * 5366 * * * * 1181 * 2152 6066 * * * * * * 1763 * * 68 0 * * * * * * 5400 0 0 S 69 6272 * 5488 1928 * * 4498 6348 2466 4599 * * * 3274 2448 3898 * 4140 * 6284 69 95 * 3976 * * * * 5400 0 0 E 70 3992 * 2845 2518 * 3145 6032 * 2718 * * 2990 * 3236 4842 5010 4469 * * * 70 26 * 5788 * * 0 * 5361 0 1939 A 71 2287 * 6111 3195 * 5177 5960 3326 3712 3512 * 6258 * * 3618 * 3840 2323 * * 71 35 * 5376 * * * 0 5389 0 1000 L 72 2738 * * * * * * 1688 * 1702 3622 * * * * * * 2724 * * 72 39 * 5246 * * * 0 5335 0 1291 S 73 4025 * 4345 3728 * 5618 * 5678 3577 1802 3998 3064 * * 3472 2929 * * * * 73 0 * * * * 512 1742 5400 0 1991 S 74 4280 * 3978 4711 * 3667 5998 * 2291 4734 * 2421 * 4821 3920 2261 6180 * * * 74 0 * * * * 0 * 5419 0 1000 I 75 4512 * 5743 * * 4570 4140 1586 * * * 4833 * * * * 4354 1246 * * 75 0 * * * * * * 5459 0 0 A 76 2754 4052 5272 * * 4704 * * * * * * 2628 * * 1050 3967 5741 * * 76 0 * * * * * * 5459 0 0 D 77 * * 2011 505 * 5561 * * * * 5272 * * * * * * * * * 77 0 * * * * * * 5459 0 0 I 78 * * * * * * * 1060 * 4672 3583 * * * * * * 1331 * * 78 0 * * * * * * 5459 0 0 E 79 2610 * 3309 1647 * 5583 * 5809 2779 * * 4279 * * 3519 3945 6243 6082 * * 79 0 * * * * * * 5421 0 0 R 80 4578 5211 3063 2926 4560 6290 4000 * 3754 * * 3541 * 4145 4143 3068 5349 3600 * 3994 80 0 * * * * * * 5395 0 0 V 81 4724 5028 * * 3093 * * 3388 6222 4253 * * * * 3851 * 4879 1050 * 3906 81 0 * * * * * * 5401 0 0 I 82 4109 * 2983 2213 * 5990 * 3443 3775 4291 * 4866 * 4534 * 3090 3498 3929 * 5716 82 0 * * * * * * 5421 0 0 I 83 6076 * * * * 6084 * 1519 * 4468 * * * * * 5063 * 872 * * 83 0 * * * * * * 5395 0 0 K 84 * * * 2878 * * 5269 3137 2600 4922 * * * 3009 3199 2950 2811 5547 * * 84 0 * * * * * * 5279 0 0 E 85 3576 * 5387 1198 * * * * 3160 * 5308 * 2197 4415 * * 5180 5230 * * 85 0 * * * * * * 5108 0 0 V 86 * * * * * * * 913 * 2269 * * * * * * * 1934 * * 86 0 * * 0 * * * 4425 0 0 //