HHsearch 1.5 NAME d1tk7a2 FAM FILE d1tk7a2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1tk7a2.a3m DATE Wed Mar 10 14:08:17 2010 LENG 43 match states, 43 columns in multiple alignment FILT 108 out of 494 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4695 2.5223 SEQ >ss_dssp CCCCHHHHSCSSCSSCEEEEETTTEEEEEETTTTEEESSSSCC >sa_dssp EEEEEEDEEBDECBECDEDEDEECDECBCAEEEEDDCEEDDDE >ss_pred CCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCEEECCCCC >ss_conf 9623556347979973499869998899977897420106898 >Consensus xqxxsxxxxxxLPxGWexxxdxxGxxYYinhxtxxTtWxxPRp >d1tk7a2 GQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP >UniRef50_UPI000180B2B9(50-80:177) PREDICTED: similar to GL21692, partial n=1 Tax=Ciona intestinalis RepID=UPI000180B2B9 E=6e-05 s/c=1.57 id=31% cov=74% -----------LPYGYEMAVDYSDRVYFLNHIAQRVSYNDPR- >UniRef50_UPI0000E4633B(349-390:848) PREDICTED: similar to amyloid beta A4 precursor protein-binding, family B, member 2 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4633B E=6e-07 s/c=1.32 id=30% cov=100% AQKTALTKPTTLPPGWREVADAHG-TYYWHVPTGTTQWSPPSP >UniRef50_UPI0000E4A4F7(315-354:1040) PREDICTED: similar to MAGI-1 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A4F7 E=9e-08 s/c=1.45 id=29% cov=95% -KPIKLCEDSELPDGWEKIDDPQYGTYYIDHVNRKTQFNSP-- >UniRef50_UPI0000D561EA(413-459:956) PREDICTED: similar to dystrophin major muscle n=1 Tax=Tribolium castaneum RepID=UPI0000D561EA E=1e-07 s/c=1.22 id=24% cov=95% -EQLTSTTQGEISPGpssvqppWERSTTPNKVPYYINHSTETTHWDHP-- >UniRef50_B7PD86(3-29:812) Spliceosomal protein FBP11/splicing factor PRP40, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PD86_IXOSC E=5e-05 s/c=1.82 id=25% cov=65% --------------NWTEHKAPDGRVYFYNHVTKQSSWEKP-- >UniRef50_B8C7D0(379-417:767) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C7D0_THAPS E=0.0006 s/c=1.16 id=31% cov=91% ---LSEVLEGELPEGWISILDPDsGEYYYSNEQTGEVTWDRP-- >UniRef50_B4L2V8(1584-1617:1885) GI15146 n=1 Tax=Drosophila mojavensis RepID=B4L2V8_DROMO E=0.0001 s/c=1.40 id=34% cov=81% -------NVEPLPPSWHFHVTPEGDIFYYNLRDRIPQWEPP-- >UniRef50_B6TJV0(44-86:296) Major ampullate spidroin 2-2 n=2 Tax=Andropogoneae RepID=B6TJV0_MAIZE E=0.0005 s/c=1.05 id=30% cov=100% GVTVELNSEVALPYHWEQCLDiRTGQVYYINWENGTRTTVDPR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1594 * * * * 581 * * * * * * * * * * * * * * 1 0 * * * * * * 2083 0 0 Q 2 * * * 2163 * * * * 3302 * * * * 821 * * * 3194 * * 2 0 * * * * * * 3543 0 0 E 3 * * 2889 2026 * * * * 4405 * * * 4053 1829 * 2643 3826 * * * 3 0 * * * * * * 4046 0 0 V 4 * 4400 * * * * * 2685 4269 2500 * * * 3686 4478 4678 3403 1936 * 4295 4 0 * * * * * * 4100 0 0 S 5 3066 * 3823 4370 * 4417 * * 4598 5241 * 5167 4843 * * 1095 3103 * * * 5 43 * 5085 * * * * 4290 0 0 L 6 4736 * 4195 4721 4211 5143 * * * 1490 2813 5650 4649 * 4255 3164 * 3931 * * 6 0 * * * * 0 * 4337 0 1000 I 7 4614 5322 * 4683 * * 5857 3569 4611 2100 5622 3529 * 4260 * 4316 3385 2221 * * 7 0 * * * * * * 4509 0 0 N 8 * * 2504 2743 6002 * 5334 * 5707 4938 * 3175 * 5402 4780 1702 3264 * * * 8 0 * * * * * * 4614 0 0 E 9 3935 * 2367 2200 * * * * 4149 4757 6340 6448 5988 2361 5723 6153 4152 3233 * * 9 0 * * * * * * 4665 0 0 G 10 4303 * 3766 2372 * 1663 * * 4101 4969 6223 3957 3716 5572 5806 6031 5191 4598 * * 10 77 4985 5630 656 1453 * * 4697 1575 0 P 11 3869 5281 3083 2512 * 3973 * * 5462 * * 5021 1297 * * 4226 5345 6583 * * 11 36 5333 * 1592 581 0 * 4818 1616 1335 L 12 * * * * 6098 * * 4753 * 156 5102 * * * * * * 5532 * * 12 16 6485 * 1585 585 * * 4904 1000 0 P 13 * * * 5526 * * * * * 5966 * * 110 * * 4807 * * * * 13 0 * * * * * * 4907 0 0 P 14 5135 7273 4008 3426 5126 6431 5189 7301 6656 5143 * 5840 1290 6256 5464 3827 4383 5161 * 3485 14 14 6649 * 2000 415 * * 4907 1000 0 G 15 * 6417 4598 5746 * 495 5111 * * * * 4058 4705 5152 4875 5097 * * * * 15 21 6145 * 2807 222 * * 4903 1000 0 W 16 * * * * * * * * * 5936 * * * * * * * * 106 4198 16 0 * * * * * * 4904 0 0 E 17 5426 7079 3789 959 * * 5967 5290 3856 6693 * 6729 * 3800 4420 3782 5008 6464 * 5701 17 12 6886 * 1000 1000 * * 4904 1000 0 I 18 3326 4109 * 2046 5967 * * 5795 3077 7121 3702 * 5912 4050 3863 4110 4032 3879 * 5014 18 15 * 6566 * * * * 4904 0 0 R 19 2238 4069 * 5256 5740 3842 4393 4298 3414 4763 * * * 5076 2587 4819 5513 3726 * 4164 19 0 * * * * 0 * 4897 0 1000 Y 20 6927 5550 6566 5566 5544 * 5003 3262 3159 3241 4588 5377 * 4305 3805 4886 3388 3005 * 3029 20 42 5627 6930 0 * * * 4904 1571 0 T 21 3752 5423 1144 * * * 6409 * * 6545 * 6391 5918 * * 2938 1896 * * * 21 98 3932 * 0 * 0 * 4897 2472 1000 A 22 3263 * 4131 3509 6518 4699 * * 5714 5058 5764 * 1982 3318 2872 3412 6977 5467 * 5689 22 159 3264 * 0 * * * 4904 3053 0 A 23 5516 * 2433 3487 * * 4597 5241 4664 * * 2531 6886 3828 5289 3164 2419 * * 5606 23 66 4480 * 0 * * * 4904 2197 0 G 24 6293 * 5130 * * 417 * 5841 4409 * * 3750 * * * * 5548 * * 4332 24 44 * 5062 * * * * 4904 0 0 E 25 5602 * 4306 3403 7188 3651 5539 4772 3147 6833 5957 5797 * 2883 1722 5207 6765 4081 * * 25 39 5214 * 0 * 0 * 4888 1677 1871 R 26 6924 5242 * 6058 6674 * * 3158 4082 5765 6114 * 2914 5481 3874 6464 2415 1888 6968 4780 26 28 5704 * 0 * * * 4904 1585 0 F 27 * * * * 2109 * * 5589 * * * * * 6072 * * * 5409 * 496 27 0 * * * * * * 4904 0 0 F 28 * * * * 1784 * * * * * * * * * * * * * * 495 28 0 * * * * * * 4904 0 0 V 29 5520 5989 * * 3541 * 6416 1621 6462 3543 6467 * * * 6391 6828 * 2217 4094 2868 29 0 * * * * * * 4904 0 0 D 30 * 5923 2012 * * * 3598 * * * * 661 * * * 5606 * * * * 30 11 * 7056 * * * * 4904 0 0 H 31 6020 * 5370 4543 5895 * 967 5806 5354 5495 * * 4203 5009 5158 4862 3523 4884 5965 4648 31 0 * * * * 0 * 4905 0 1000 N 32 3751 5841 5717 3453 6212 * 5524 3306 4308 4706 * 2780 5404 4063 4258 3942 4028 2746 * 5965 32 0 * * * * * * 4904 0 0 T 33 5191 * 4434 3880 * * 5577 6464 6708 3861 6262 2838 * * 5455 3963 977 * * * 33 0 * * * * * * 4904 0 0 R 34 * * * 4681 6402 2355 5347 * 1841 * 6578 4206 * 2854 2166 5362 * * * * 34 0 * * * * * * 4904 0 0 R 35 3851 * * 3040 * * 6420 3869 3479 * 5824 * * 3182 3545 4148 1969 3134 * * 35 0 * * * * * * 4904 0 0 T 36 5868 * * * * * * * 6625 * 5814 5841 5967 * 5969 2316 605 4408 * * 36 0 * * * * * * 4904 0 0 T 37 6262 * * * * * 3885 * * * 5912 * * 1545 6436 2379 1489 * * * 37 0 * * * * * * 4904 0 0 F 38 * 5476 * * 3711 * * * * 5109 * * * * * 5606 5969 * 479 3077 38 0 * * * * * * 4904 0 0 E 39 6408 6389 2584 1858 4998 * 4709 3494 5288 3973 5476 4779 * 4994 * 5221 3152 4829 * 5555 39 0 * * * * * * 4907 0 0 D 40 6700 * 1541 * 5564 * 2286 5847 3868 5533 * 5178 3776 6638 2382 6562 * * * * 40 0 * * * * * * 4907 0 0 P 41 * * * * * * * * * * * * 0 * * * * * * * 41 43 5080 * 0 * * * 4907 1179 0 R 42 * 5851 * * * * * * 3335 * * * * 6160 291 5017 * 5530 * * 42 0 * * * * * * 4319 0 0 P 43 * * * * * * * * * * * * 0 * * * * * * * 43 0 * * 0 * * * 2475 0 0 //