HHsearch 1.5 NAME d1tafb_ FAM FILE d1tafb_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1tafb_.a3m DATE Mon Mar 8 19:05:50 2010 LENG 70 match states, 70 columns in multiple alignment FILT 45 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4228 0.5840 SEQ >ss_dssp CCCSCCCCHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHC- >sa_dssp EDEEEEDDBEDBCEEBEEEEEDECEEEDADDDBCDDBCEDDECDDDACEDBEEDEDEEDCEEBCDEBEE- >ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC >ss_conf 9753447977899999973988868999999999999999999999999999505886798999997429 >Consensus xxxxsxlxxesikxiAesxGixxlxdexaxxLAxDveYRireiiQxAxkFMrhskRxxLttxDIxxALrl >d1tafb_ MLYGSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV >UniRef50_A4S686(5-70:383) Predicted protein (Fragment) n=2 Tax=Ostreococcus RepID=A4S686_OSTLU E=3e-06 s/c=0.80 id=36% cov=96% ----SRVHVDSVRAIAATIGAPPVDADAARALASDCEYRLRQVFQDAMKCMRASKRTTLSAEDVNAALRL >UniRef50_UPI0001554FA3(9-77:389) PREDICTED: similar to TFIID subunit p80 n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001554FA3 E=3e-06 s/c=0.77 id=31% cov=100% -LANTALPIKTIKSWAEAVGISPLSEEACQVLVDEVTFRVKKITQEAKMFMQMGLHQKLTTNDVDFALQL >UniRef50_D0MZ10(2-66:436) Transcription initiation factor TFIID subunit 6, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ10_PHYIN E=9e-18 s/c=1.40 id=32% cov=94% ----SLLRPETLQVVAQSLGLDDISDECVCELLPEVELRVRQVVQDALKFQRHSRRPQLDPTHVNQALQ- >UniRef50_A8QGM7(44-102:158) Transcription initiation factor TFIID subunit 6, putative (Fragment) n=1 Tax=Brugia malayi RepID=A8QGM7_BRUMA E=1e-12 s/c=1.26 id=33% cov=86% -----------VKVVAESVGIAGLSDVCASQIAVQTTYAVKMVTEQAKKFAVHGRRKRVTAEDIDSAFAL >UniRef50_A2F070(1-69:407) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2F070_TRIVA E=7e-12 s/c=1.04 id=23% cov=87% ----------TVKSIADQLGIKIKNDALAESLAQDAEYRVSKFIQPLVNYFENSADKYLTTDHINHILRV >UniRef50_Q23ZC7(19-67:522) TATA box binding protein associated factor n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23ZC7_TETTH E=3e-09 s/c=1.28 id=32% cov=71% --------------------IDKVDKEISQEICNQVEIELRSLIEDSIKFMKHFKRDKLTTSDVEYALK- >UniRef50_B7QFH1(23-64:117) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7QFH1_IXOSC E=4e-05 s/c=1.17 id=33% cov=60% ----SQFSRDSILLFAESYGISDVSQQALAVLTEDLNYRLRELAQ------------------------- >UniRef50_B0ENK5(1-69:433) Transcription initiation factor tfiid, putative n=2 Tax=Entamoeba RepID=B0ENK5_ENTDI E=2e-15 s/c=1.21 id=26% cov=100% -MTSQKIPLDFIKSMLTANGFEEMSDEMINLISEEAENSISELFNEATKFMRHSKRKMLTIQDINSALKL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * * * 1099 907 * * * * * * * * * 2 0 * * * * * * 2506 0 0 Y 3 2435 * * * * * * * * * * * 2451 * * 2814 2212 * * 1867 3 0 * * * * * * 2506 0 0 G 4 2888 * * * * 2072 * * * * * 1790 * * * 1565 * * * * 4 0 * * * * * * 2587 0 0 S 5 * * * * * * * * * * * 3860 * 3258 * 530 2897 * * * 5 0 * * * * * * 3308 0 0 S 6 3742 * * * * * * 4235 3390 3489 * 3939 * 3253 2856 4211 4433 1841 * * 6 0 * * * * * * 3390 0 0 I 7 * * * * 4826 * * 2008 * 1129 * * * * * * * 2496 * 3613 7 0 * * * * * * 3452 0 0 S 8 * 4968 * * * * 4632 4790 * * * * 1139 * 4229 1560 4475 * * * 8 0 * * * * * * 3561 0 0 A 9 2983 * 5258 * * * * 4537 2377 2959 * 5614 4256 3132 4318 2817 3955 4650 * * 9 0 * * * * * * 3557 0 0 E 10 5557 * 1489 1076 * * * * 3771 * * * * 4934 * 4559 * * * * 10 0 * * * * * * 3531 0 0 S 11 * * * * 4286 * * * * * * 2951 * * * 1064 1552 * * * 11 0 * * * * * * 3667 0 0 M 12 * * * * * * * 1265 * 4047 3263 * * * * * * 1254 * * 12 0 * * * * * * 3736 0 0 K 13 * * * 4701 * * * * 741 4357 * * * 3121 2325 * * * * * 13 0 * * * * * * 3736 0 0 V 14 5099 * 2010 5045 * * * 4611 * 3447 * * * 4800 * 2374 4214 1852 * * 14 0 * * * * * * 3735 0 0 I 15 5737 * * * 4578 * * 1589 * 5875 3007 * * * * * 5455 1644 3884 4184 15 0 * * * * * * 3735 0 0 A 16 108 * * * * * * * * 4375 * * * * * 5389 * * * * 16 0 * * * * * * 3735 0 0 E 17 5099 * 2734 716 * * * * * * * * * 2611 * * 4375 * * * 17 0 * * * * * * 3735 0 0 S 18 3180 * * * * * 5698 * * * 4972 * * 3384 * 579 4469 5140 * * 18 0 * * * * * * 3735 0 0 I 19 3875 5095 * * 5607 * * 2315 5399 1624 5743 4375 * * * * 5484 2148 * 5781 19 0 * * * * * * 3735 0 0 G 20 * * * * * 73 * * * * * * 4347 * * * * * * * 20 0 * * * * * * 3793 0 0 V 21 5146 * * * 3224 * 5438 834 * 2890 * 4119 * * * * * 3506 * * 21 90 * 4051 * * * * 3841 0 0 G 22 3310 * 3401 3207 5662 3060 * 4856 4039 * * 4775 5084 * 5257 2225 2896 5582 * * 22 64 * 4532 * * 0 * 3820 0 1670 S 23 * * 3323 3283 * 3830 * 4067 3769 * * 2085 3095 4226 5410 3143 4293 * * * 23 0 * * * * 0 * 3831 0 1397 L 24 * * * * * * * 2714 4103 775 3559 * * * * * * 3058 * * 24 0 * * * * * * 3882 0 0 S 25 4447 * 3259 5291 * 3481 * * 4872 5781 * 2380 3323 4423 5809 1794 4743 * * * 25 0 * * * * * * 3882 0 0 D 26 5155 * 736 2201 * * 5310 * 5071 * * 5709 4004 5841 * * * * * * 26 0 * * * * * * 3882 0 0 D 27 3277 * 2016 1037 * 5184 * * * * * 4058 * 5841 * 5692 * 4714 * * 27 0 * * * * * * 3882 0 0 A 28 1734 3388 * * * * * 3726 * 3578 4548 * 4429 * * * 3977 1777 * * 28 0 * * * * * * 3882 0 0 A 29 777 3870 * * * * * 3879 5344 3112 * * * * * 3835 5709 4310 * * 29 0 * * * * * * 3882 0 0 K 30 2290 4888 * 3071 * 5310 * * 3013 5781 * 4548 * 2519 2694 4098 4463 * * * 30 0 * * * * * * 3882 0 0 E 31 2423 * * 3120 * * * 5435 * 2071 5781 3947 * 4286 * 3348 3950 2836 * * 31 0 * * * * * * 3882 0 0 L 32 * * * * * * * 2196 * 355 * * * * * * * * * * 32 0 * * * * * * 3882 0 0 A 33 472 5071 * * * * * * * 4888 5310 * * * * 3380 3914 5158 * * 33 0 * * * * * * 3882 0 0 E 34 5692 * 3567 1776 * 5184 * * * 6078 3504 4072 3570 2719 4805 4022 4545 4714 * * 34 0 * * * * * * 3882 0 0 D 35 * * 549 2367 * * * * * * * * * 3882 * * 4192 * * * 35 0 * * * * * * 3882 0 0 V 36 2659 5155 * * * 5310 * 4854 * 3845 * * * * * * 4714 630 * * 36 0 * * * * * * 3882 0 0 S 37 * 3933 5908 764 * * * * * * * 4604 * * * 2941 2665 * * * 37 0 * * * * * * 3882 0 0 I 38 5400 * * * 3033 * * 4337 * 4888 * 4548 * * * * * * * 458 38 0 * * * * * * 3882 0 0 K 39 4714 * * 5071 * * * * 3954 * * * * * 278 4548 * * * * 39 0 * * * * * * 3882 0 0 L 40 * * * * * * * 1465 * 1416 5073 * * * * * * 2100 * * 40 0 * * * * * * 3882 0 0 K 41 4805 * * * * 4382 3202 * 1965 5195 * * * * 1240 3308 * * * * 41 0 * * * * * * 3882 0 0 R 42 * * 5809 1344 * * 4161 * 3536 5184 4714 * * 1727 5663 5071 * * * 5108 42 0 * * * * * * 3882 0 0 I 43 4499 * * * 4103 * * 1637 * 2205 * * * * * * * 1477 * * 43 0 * * * * * * 3882 0 0 V 44 4374 5446 * * 3820 * * 1617 * 2937 4843 * * * * * 2571 2334 * * 44 0 * * * * * * 3882 0 0 Q 45 * * 4582 2590 * * * 4972 * * * 4548 * 563 * 5344 * 5956 * * 45 43 * 5083 * * * * 3882 0 0 D 46 5300 * 1992 1484 5502 * * * 5290 * * 5502 4057 3296 * 5765 4089 4132 * * 46 0 * * * * * 0 3822 0 1000 A 47 473 * * * * 4311 * * * 4057 * * * * * 2565 * * * * 47 0 * * * * * 0 3822 0 1000 A 48 3195 5941 * * * * * 3356 3315 2280 5109 * * 4089 5289 2682 3568 3095 * * 48 0 * * * * * 0 3822 0 1000 K 49 * * * 4991 * * * * 617 * 4966 4057 * 3349 3314 * 5290 * * * 49 0 * * * * * 0 3822 0 1000 F 50 * 3331 * * 432 5502 * * * 5289 * * * * * * * 4991 * 3637 50 0 * * * * * 0 3822 0 1000 M 51 4654 * * * 4057 * * * 5142 3772 388 * * 4852 * * * * * * 51 0 * * * * * 0 3822 0 1000 N 52 * * * 4057 * * 3812 4022 2691 * * 4433 * 4106 1184 * * 3214 * * 52 0 * * * * * 0 3822 0 1000 H 53 3668 * * * * 5339 556 * 4154 * 4282 3545 * * * * * 5434 * * 53 0 * * * * * 0 3822 0 1000 A 54 2653 * * * 5026 2245 * * * * * * * * * 793 5502 * * * 54 0 * * * * * 0 3822 0 1000 K 55 4057 5053 * * * * * * 685 4966 5289 4884 * * 2350 * * * * * 55 0 * * * * 0 * 3822 0 1000 R 56 * * 4099 * * * 4080 * * * * * * * 180 * * * * * 56 44 5069 * 2322 322 * * 3865 1000 0 Q 57 * * 3095 * * 6068 * * 2225 * 6038 5015 3492 3484 3132 5158 1797 * * * 57 37 5317 * 2000 415 * * 3865 1000 0 K 58 * * * 5992 * * 6190 * 1862 5678 4538 * * 4217 2448 * 2059 3358 * 4099 58 0 * * * * * * 3865 0 0 L 59 * * * * * * * * * 246 3076 * * * * * * 4700 * * 59 0 * * * * * * 3865 0 0 S 60 * * 4879 * * 6060 5891 * 5660 4189 3304 5015 * * * 2581 836 * * * 60 0 * * * * * * 3865 0 0 V 61 2713 * * * * * * 3595 * * * 5973 3124 * 5297 3875 1223 3156 * * 61 0 * * * * * * 3865 0 0 R 62 3794 * 2259 2605 * 6003 5887 5660 5282 * * 3205 * 2858 5653 2503 4879 * * * 62 0 * * * * * * 3865 0 0 D 63 * * 140 * * * 3437 * * * * * * * * * * * * * 63 0 * * * * * * 3865 0 0 I 64 * * * * 4176 * * 949 * 4136 * * * * * * * 1435 * * 64 0 * * * * * * 3865 0 0 D 65 4325 * 1658 4099 * 6060 * * * * * 1332 * * 4188 3212 * * * * 65 0 * * * * * * 3865 0 0 M 66 3519 * 5069 4444 5148 5766 3064 * 3900 4475 5653 2998 * 3528 2990 2966 * * * 3771 66 0 * * * * * * 3865 0 0 S 67 260 * * * * * * 4099 * * * * * * * 3720 * 5015 * * 67 0 * * * * * * 3865 0 0 L 68 5026 * * * 4081 * * * * 205 4544 * * * * * * * * * 68 0 * * * * * * 3865 0 0 K 69 4532 * * 4929 * 5707 * * 1712 * * 5372 * 3365 1064 * * * * * 69 0 * * * * * * 3888 0 0 V 70 * * * * * * * * * 922 4286 * * * * * * 1248 * * 70 0 * * 0 * * * 3499 0 0 //