HHsearch 1.5 NAME d1t66d2 FAM FILE d1t66d2 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1t66d2.a3m DATE Mon Mar 8 21:20:10 2010 LENG 102 match states, 102 columns in multiple alignment FILT 113 out of 643 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.9 EVD 0.4439 -0.6485 SEQ >ss_dssp CCCBCCEEEEECCSTTTCCCSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECSSCEEEEEEEEEETTTTTTSCCEEEEEEGGGTEEEEEECCCC CC >sa_dssp EEDDDBDBEDDCBEEDEEDEEDBDABACADCACCDEBDCDACEDECEEDCEDDECEDEEDCCCBDBCACBDDECBEEEDBBABACAEDCECECDDEBECE EE >ss_pred CCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEECCCEEECCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEC CC >ss_conf 9876766897247765568970999999933268840999986887446234120547986899999999244358986999999388887379999633 69 >Consensus AxxxxPxVxxxxpxxxxxxxxxxtLxCxvxxfxPxxixvxWxxxxxxxxxxxxxxxxxxgtysxxSxlxvxxxxxxxxxxtCxVxHxxxxxpixxxxxxx xx >d1t66d2 AKTTAPSVYPLAPGTAALKSSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSALYTLTSSVTVPSSSWPSQTVTCNVAHPASSTKVDKKIVPR NC >UniRef50_Q864T7(21-116:118) Beta-2-microglobulin n=5 Tax=Mammalia RepID=B2MG_ORNAN E=2e-05 s/c=0.52 id=16% cov=74% -------------------GESNNLNCYVSSFHPPQISIRLLKNGQEMPGVEMSDLSFSNDWTFHRLVHTVFTPSNQDTFECEVVHEGVKKTV------- -- >UniRef50_Q8AXA0(15-104:111) Beta-2-microglobulin n=1 Tax=Raja eglanteria RepID=B2MG_RAJEG E=5e-05 s/c=0.54 id=17% cov=70% -------------------GEKNTLLCHAKEFNPPNVELQLFEDGNvfSQANQTDLSFESNWKFKLTKFIELIPREDVE--YSCHVMYMGKTS------- ---- >UniRef50_UPI0000D71CD2(291-386:442) Hypothetical protein n=1 Tax=Danio rerio RepID=UPI0000D71CD2 E=0.0002 s/c=0.49 id=17% cov=93% -----PSVKMYKP--DDISTKQISYVCEVSSPNLGDVYIMWKVNNTFTEGKSSDPIQQQGSTSVVSILTISKKefENPETTINCAVVHANMKDTASPLLK STS- >UniRef50_B1H2X4(149-254:562) LOC100145501 protein n=10 Tax=Xenopus RepID=B1H2X4_XENTR E=7e-05 s/c=0.45 id=20% cov=78% -------------------GEEVTLTCTAPTNCPGlSPTFTWEGSVNTERTQNHTLRHKDGNFSYWSNITFTPSPRDHNTpLTCTVtyKHESAKANITLN VE---- >UniRef50_P01837(4-106:106) Ig kappa chain C region n=41 Tax=Eutheria RepID=IGKC_MOUSE E=2e-13 s/c=0.74 id=19% cov=97% ----APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSwtdqDSKDSTYSMSSTLTLTKdEYERHNSYTCEATHKTSTSPIVK SFNRNEC >UniRef50_Q95589(163-257:257) Class I TLAI alpha-1 (Fragment) n=6 Tax=Cyprinidae RepID=Q95589_CYPCA E=4e-11 s/c=0.73 id=18% cov=93% -KKNSPDVHVFAR-RAPDDHSKLVLICLVTGFYPRDIEMNIRLNRINIESQISSGIRPNDDESFQMRSSVKIDRNHRGSYDCHVIHSSLTKPVTVE---- -- >UniRef50_C3XQ63(707-785:1056) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XQ63_BRAFL E=0.0001 s/c=0.60 id=15% cov=78% -------------------GRTASLQCVVTGAKPNITVLYWEKDGLRISTSRYSRKYSGGTLDHPNLRISHVTREDAGKYSCLVQHPVTDVRATMKMK-- -- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 5748 0 0 K 2 3441 * 4175 4290 * * * * 2330 4342 4590 4646 4119 2808 * 3213 3901 3370 * * 2 0 * * * * * * 6121 0 0 T 3 3899 * 3703 * * * * * 3764 4736 * 4327 3809 * * 1851 2264 4069 * 3660 3 0 * * * * * * 6648 0 0 T 4 4098 5090 * 2586 * * * * 4084 * * 4900 * 3491 5107 1585 2847 3990 * * 4 0 * * * * * * 6970 0 0 A 5 1838 4924 * 5469 * * * * 5449 4743 * * 1450 * 4021 2740 * 5199 * * 5 27 5751 * 0 * * * 7268 1000 0 P 6 * * * * * * * 5917 5672 * 5813 * 111 * * * * 5622 * * 6 66 5849 5186 0 * * * 7543 1000 0 S 7 5252 * 4404 3393 5023 * * 5652 2937 * * 5884 5757 3780 3776 1840 2830 4351 * * 7 0 * * * * 0 * 7601 0 1154 V 8 5810 * * * * * * 3113 * 3220 3897 * 4469 * * * * 628 * * 8 42 5133 * 528 1706 * * 7625 1693 0 Y 9 * * * 5719 2803 * 3611 5991 4846 4594 * * 5339 * 5310 1924 1986 6159 * 3572 9 64 * 4524 * * * * 7625 0 0 P 10 4559 * 5260 5125 * * * 3166 5926 1709 4620 * 3067 * * 5775 4884 1960 * * 10 20 * 6157 * * 564 1628 7748 0 2262 L 11 * * * * 2324 4848 6139 3153 * 1509 4034 6345 * 4159 * 5240 4827 4622 * 4160 11 78 4671 6229 0 * 983 1018 7865 2184 1619 A 12 3599 * 6245 4643 6151 3862 4467 * 5680 4772 5839 * 1662 4167 5078 4247 4038 3120 6050 5817 12 46 6204 5836 1000 1000 * 0 7851 1000 1666 P 13 5861 * * 6152 5929 * * * 4206 4250 * * 863 4396 4398 2978 4422 5202 * * 13 52 * 4828 * * 1457 653 8028 0 2128 G 14 2695 3094 6505 4463 * 6802 * 4590 6257 4739 * 4068 3216 * 6105 1746 5265 4620 6263 6437 14 41 6159 6163 0 * 1927 440 7921 1000 2880 T 15 5027 4829 5517 3976 4693 4729 5046 5384 4234 3795 6427 4903 3436 3523 3546 2716 4132 4023 * 6353 15 37 6509 6105 0 * 386 2092 7973 1000 2956 A 16 3420 * 4363 2165 * 3746 4959 5071 5250 5258 * 5397 6178 6082 3554 2305 4866 4531 6462 5838 16 20 6209 * 0 * * 0 8024 1000 1769 A 17 4574 * 3693 2310 6175 6819 4232 5539 6197 3742 * 5403 3354 4160 * 2639 3610 3767 * * 17 0 * * * * 938 1065 8036 0 1769 L 18 4921 * 6006 4060 4641 5550 4903 3011 5466 2803 6249 4044 3240 6135 3863 3927 3440 4067 6327 6154 18 122 4628 4623 1209 817 0 * 8189 2697 1000 K 19 5454 * 3447 3258 5134 3766 6447 6047 3895 4766 6377 5624 3149 4356 3961 2590 3485 5446 * 6395 19 86 4800 5523 1778 497 486 1806 8146 2306 2253 S 20 4610 * 4373 3826 * 1901 4485 6586 6746 3995 * 2469 6598 4972 5943 2664 4362 * * * 20 46 5588 6571 0 * 1429 670 8163 1759 2180 S 21 4782 * 3200 2725 5978 2917 * * 3995 * * 3366 6346 3058 4111 2725 4204 * * * 21 25 5885 * 461 1871 * 0 8159 1663 2274 M 22 4963 * 5879 3653 5972 5079 5993 6359 2765 4489 5151 5278 3167 4560 4011 3237 2594 4168 * 6704 22 54 4769 * 0 * 544 1670 8116 2671 2274 V 23 2346 * 6622 5169 * 5344 6668 3702 * 3236 * 4141 5715 * 6935 3853 4513 1628 6015 6381 23 45 5618 6629 0 * * 0 8133 1736 1000 T 24 6562 * 6768 4543 6044 * 5553 4957 4376 5922 * 3540 4734 4806 5317 2886 1345 3804 6868 6566 24 70 4701 6811 2022 408 0 * 8160 2715 1707 L 25 5722 * * * 3283 * * 3308 * 678 5693 * * * * * * 3455 * 4577 25 0 * * * * 0 * 8178 0 1000 G 26 5309 * * * 6040 4194 6760 3652 6611 3265 6382 5032 * 5889 4216 2847 1774 2733 * 7161 26 0 * * * * * * 8185 0 0 C 27 6335 106 * * * * * * * 6058 * * * * * * * 5043 * 6225 27 0 * * * * * * 8199 0 0 L 28 5364 * 5232 3861 5282 6521 3001 5797 * 1858 5458 4906 5848 4910 3968 4180 3413 3870 6817 5156 28 0 * * * * * * 8199 0 0 V 29 1567 * * * * * * 2515 * 3272 * * * * * 4253 5078 1727 * * 29 0 * * * * * * 8199 0 0 K 30 4053 6847 5288 4301 5715 5874 6335 5734 4667 4248 5628 3863 6258 4451 4158 1920 2834 4201 6474 5521 30 0 * * * * * * 8199 0 0 G 31 * * 2991 4127 * 1281 5231 * 5095 * 6481 2870 4740 5987 4352 3897 6258 * * 5705 31 13 * 6763 * * * * 8199 0 0 Y 32 5086 6776 * * 694 4735 * 5534 * 4173 5201 6254 6289 * * 4923 6485 5918 6121 3313 32 57 5193 6478 962 1039 * 0 8222 2270 1000 F 33 5122 6239 6829 * 2664 * 4419 * 3985 6545 6980 4500 5481 5539 4798 2688 6918 6464 6779 1494 33 29 5649 * 0 * 1000 1000 8207 1511 1733 P 34 5146 * * * 6532 * 5869 * * 4632 * * 379 5521 * 3825 5802 5369 * * 34 12 6928 * 0 * * 0 8216 1000 1000 E 35 3144 * 3087 3388 * 4622 6682 6580 2538 5341 6109 3409 3597 3758 3627 4281 6902 * 6630 * 35 85 4970 5314 0 * 0 * 8216 2288 1000 P 36 4237 * 2523 5003 6898 3190 4736 5276 7126 5670 * 2844 3359 4022 5849 3130 5420 3635 * * 36 93 6872 4223 1000 1000 0 * 8218 1000 2186 V 37 3545 * * * 4572 6989 5910 1550 * 2441 6534 * 6231 * * * 4864 1922 * * 37 21 * 6098 * * 0 * 8182 0 3533 T 38 4509 * 5290 2942 7181 * 5768 * 3519 5860 5482 3123 * 3841 4625 2506 2460 4775 6710 5685 38 0 * * * * 0 * 8244 0 1822 V 39 * * * * 2959 * * 2265 * 2568 4251 * * * * * 6621 1211 * * 39 0 * * * * * * 8241 0 0 T 40 6748 * 5778 4722 3988 6760 * 6785 2902 5184 4574 4686 * 3973 3100 2694 1930 * * 6172 40 0 * * * * * * 8241 0 0 W 41 * * * * 6759 * * 6273 * 4813 6569 * * * * * * * 102 * 41 203 2930 * 1464 649 * * 8241 5158 0 N 42 * * 6072 4040 3440 6537 6573 5286 2616 2370 4885 4589 * 4269 3518 4492 3426 6898 6129 4209 42 75 4306 * 1396 690 * * 8241 3593 0 S 43 5633 5227 4208 3510 * 4431 5949 6293 2553 4230 6839 4429 5144 4766 2365 3909 7279 3001 * * 43 82 4176 * 1288 760 * * 8241 3348 0 G 44 6593 * 1972 5871 * 2197 * 6569 3724 5855 * 1861 6084 5973 4781 4835 5742 * * * 44 82 4183 * 1816 482 * * 8241 3652 0 S 45 5728 5616 4693 3813 6513 1324 * * 3697 4933 * 3246 * 4156 4999 3248 5655 6276 * * 45 85 4449 6493 1254 784 * * 8241 3096 0 L 46 4233 * 4653 3957 6573 4253 4739 3591 2878 4456 5737 4155 5936 3130 4257 3993 3672 3669 * * 46 63 4553 * 1502 629 * 0 8220 2825 1000 S 47 5667 * 5422 1993 5280 4027 4867 6614 4514 4041 * 4259 3827 3956 5782 3600 3055 4020 * * 47 68 4442 * 1857 466 0 * 8220 3108 1000 S 48 4751 * 4511 3250 6655 4583 5171 3658 4845 2703 5158 4780 6046 3751 5452 2941 3500 3803 * * 48 35 5889 7074 1332 730 * * 8241 1661 0 G 49 4441 5777 3349 3916 5396 2660 5219 6074 4430 6698 * 3890 2701 4143 4663 4042 3381 6786 * 6862 49 127 3565 * 2096 384 0 * 8235 4110 1000 V 50 3091 * 6010 3817 5834 3246 5749 4780 4905 5295 6450 4072 5025 4616 6695 2656 3866 2545 * 6810 50 47 5505 6628 1272 771 * * 8241 2201 0 H 51 5491 6983 4179 3283 * 4701 4694 6886 3557 4081 * 7340 4842 3181 4375 3236 2685 3537 6227 5524 51 15 6631 * 0 * * 0 8229 1000 1000 T 52 5754 * 6938 3240 * 5233 6698 5550 6189 5674 5687 3320 4841 3051 5346 3348 1849 3418 * 7021 52 122 3780 6870 1443 662 0 * 8229 3913 1000 F 53 5194 * 5333 3554 4018 3282 5169 4589 3824 4539 5602 5324 5213 3405 5080 2896 3232 5307 * 4245 53 24 5893 * 2906 207 * 0 8235 1689 1000 P 54 5278 * 4731 3552 6039 4211 4393 5407 5371 5097 * 4110 1786 5315 5817 2951 3708 4515 5860 * 54 45 5037 * 2324 321 * 0 8235 2698 1000 A 55 4199 * 3986 3024 7164 4920 * 4471 4226 4618 5772 5731 3884 4287 3505 3101 3198 3322 * 6570 55 121 3632 * 1809 485 * 0 8235 4375 1000 V 56 4663 * 6262 3434 5845 * 4994 3745 3112 3561 5296 5181 3348 3864 3239 3789 5274 3347 * 6804 56 32 5488 * 1316 741 * 0 8235 1822 1000 L 57 4188 * 4214 4341 6485 6510 3321 4369 3807 3213 5651 3122 3708 3304 5545 4413 3338 * * 6353 57 47 4973 * 867 1147 * 0 8235 2813 1000 Q 58 4751 * 3653 3350 5206 4221 5936 * 3921 6467 * 3714 2932 4063 4090 2269 4706 6491 * 5145 58 46 4979 * 1796 490 0 * 8235 2745 1000 S 59 5556 6481 1562 5303 * 2998 7119 * 5244 * * 1874 6858 5652 5585 3264 6785 6715 * * 59 84 4144 * 950 1052 * * 8241 3446 0 A 60 4953 * 2954 * * 856 6028 * 5902 5697 * 3856 5132 * 5197 3860 5010 * 6611 * 60 120 3650 * 1381 699 * * 8241 4210 0 L 61 * 6481 3378 6424 5973 4823 * * 3733 3734 6040 3537 6450 6570 5962 2911 1345 * * 6226 61 0 * * * * * * 8241 0 0 Y 62 6505 * * 5013 1454 5209 6424 * * 5531 * 6355 * 5249 * 5571 5646 6706 4420 1333 62 12 * 6883 * * * * 8241 0 0 T 63 5747 5778 4704 7035 4809 * * 6549 5374 5453 4816 4529 * 3502 3825 1552 2283 6493 5708 6725 63 11 7014 * 3807 107 * 0 8234 1000 1000 L 64 2829 5014 * 5417 3742 * 6738 3291 4498 2964 3761 * * 4241 5359 4754 3934 3080 6723 3941 64 0 * * * * * 0 8234 0 1000 T 65 5426 * 5256 6641 4232 * 4695 4364 5263 5577 6397 4488 6352 3895 3861 2410 2484 3341 5193 4171 65 0 * * * * 0 * 8234 0 1000 S 66 4504 5064 7042 * * 4864 6993 5654 5161 4786 5491 5113 6355 5811 5799 701 4292 5205 * * 66 0 * * * * * * 8241 0 0 S 67 4430 * 5573 4212 4020 * 4280 5394 4685 3720 * 5554 * 4047 3321 3664 3073 3328 4196 3423 67 36 5362 * 3108 178 * * 8241 1791 0 V 68 4683 5257 * * 5931 * 5773 3750 6735 979 6744 6578 * 6860 5464 6276 5870 2478 6559 4722 68 0 * * * * * * 8241 0 0 T 69 5535 * 5585 3651 * * 5060 5417 3654 3532 6812 4592 4831 4639 3547 3404 1664 6550 5821 6773 69 29 5651 * 0 * * * 8233 1744 0 V 70 6988 * * * 4484 6481 * 2597 * 1869 4941 * 5196 * 5581 6560 4692 1544 * 5362 70 50 6085 5714 0 * * * 8233 1000 0 P 71 6127 4845 4031 6763 6202 * 6319 4833 3837 3277 * 4282 2526 5965 5021 2791 2313 5121 * * 71 37 5316 * 0 * 1000 1000 8216 2325 1669 S 72 2523 * * 4668 4685 5601 6929 4411 3573 3776 5776 6878 2810 5221 5145 3292 3257 3806 * 6334 72 53 4784 * 337 2262 0 * 8220 2724 1000 S 73 3322 * 3421 3670 * 4103 5635 * 3545 5478 * 5795 5825 3549 5112 2141 2786 5649 * * 73 153 3799 5126 583 1588 * * 8228 4003 0 S 74 4114 * 2985 1846 6078 * 5532 * 4875 4583 6800 4749 3480 3239 5261 3764 4799 4961 * 5949 74 72 5525 5226 0 * * 0 8216 1724 2313 W 75 6363 * 2711 3706 6494 4021 6971 6963 5570 3563 5090 3634 6122 4724 4146 4411 6372 * 1919 5500 75 296 2598 5618 392 2072 927 1077 8208 5482 3253 P 76 4450 6515 3258 3025 6854 6831 3166 5157 4135 5806 5549 2962 4048 3921 3747 4570 4368 5493 6450 6725 76 105 3829 * 0 * 337 2262 8208 3670 3161 S 77 4543 * 3750 3148 * 1502 4492 * 3256 4981 * 4467 6892 4257 5034 3534 * 6209 * * 77 146 3542 6579 127 3564 0 * 8221 4454 1000 Q 78 3385 * 3208 3277 6875 2888 6621 6829 3547 5365 4417 3534 6520 4112 4729 2984 5368 5755 * 6411 78 41 5169 * 0 * * 0 8205 2461 1000 T 79 6520 * 5661 2913 * 4053 3937 4845 4044 5022 6696 5204 6431 4420 3576 2715 2797 3187 * * 79 160 3694 5177 384 2097 0 * 8205 3893 1000 V 80 5553 * * * 1967 * * 3067 * 4074 6412 * * * * * * 2894 * 1329 80 32 6603 6412 0 * 0 * 8204 1000 1912 T 81 4514 * 5167 4664 * 6845 6387 3421 4305 * 6839 6329 * 4805 3995 2176 1574 4991 5965 * 81 19 6223 * 0 * 0 * 8224 1000 1000 C 82 * 90 * * * * * 6432 * 6573 6396 * * * * * * 5223 * * 82 0 * * * * * * 8227 0 0 N 83 6356 * * 2333 * * 4193 4708 4644 4596 5231 4795 * 3828 2393 4215 3365 2828 * * 83 0 * * * * * * 8227 0 0 V 84 2624 * * * 5435 5730 * 3899 * 6546 * * * * * 6588 5260 553 * * 84 48 4929 * 708 1367 * * 8227 2420 0 A 85 4508 * 4281 3127 6524 5007 4695 5313 2837 5096 6577 4213 * 3218 4199 3467 2886 4466 * 5811 85 11 6986 * 1585 585 * * 8211 1000 0 H 86 * * 6468 * 6180 * 329 5941 6744 * * 4530 * 4408 6840 * * * * 4202 86 18 * 6311 * * * * 8209 0 0 P 87 4395 6639 4872 2271 * 3781 * 5265 3651 6540 5098 6794 2029 4942 4374 3690 5184 6855 5974 5756 87 14 * 6675 * * * 0 8126 0 1000 A 88 1871 5431 4118 4189 * 2552 * * 5509 6788 * 4686 * 5302 4468 1995 5092 * * * 88 27 5765 * 2585 263 * 0 8030 1000 1587 S 89 4714 * 6548 * 6339 4573 6264 4927 4712 1421 5232 4803 * 6092 6282 2198 3910 4306 * 6108 89 0 * * * * 0 * 7983 0 1587 S 90 5400 * 3551 4299 * 4332 6393 * 2394 5254 * 3337 3901 5402 4647 2802 2495 6383 * * 90 0 * * * * * * 7950 0 0 T 91 3597 * 4880 2823 5240 4230 6325 * 3027 3748 6029 4867 * 3909 6219 2717 3141 4115 * * 91 0 * * * * * * 7832 0 0 K 92 6083 * 6357 5812 4612 4157 * * 3447 * * 4251 953 5236 5053 4485 3907 5853 * 6359 92 0 * * * * * * 7734 0 0 V 93 3924 * 6230 5829 6079 * * 2103 4355 2255 4508 * * 4358 * * 6181 1924 * 5198 93 0 * * * * * * 7702 0 0 D 94 5043 * 3143 2856 * * * 6318 5937 4275 * 4244 * 4570 3314 2426 2583 3485 * * 94 0 * * * * * * 7660 0 0 K 95 4080 * * 4307 5677 4464 * 5658 1775 5583 * 4470 4688 3696 3206 3954 5517 2869 * * 95 0 * * * * * * 7625 0 0 K 96 * * * 2558 * 4577 4025 4873 2802 5389 * 4667 5905 5729 3926 2683 2126 * * * 96 0 * * * * * * 7552 0 0 I 97 * * * * 4081 * 5210 2250 * 2925 3638 * * * 5693 * 3569 1948 3231 5472 97 0 * * * * * * 7259 0 0 V 98 3948 * * 2280 * 3726 * 3512 2597 3899 * 4055 * * 3770 4091 4010 3653 * * 98 0 * * * * * * 6753 0 0 P 99 * * * 3795 * * 4674 * 3211 4768 * 5094 1135 * 3301 2663 * * * * 99 0 * * * * * * 6450 0 0 R 100 * * * * * 4876 * * 2375 * * 4019 * 4196 3583 2555 1310 * * * 100 0 * * * * * * 5895 0 0 N 101 * * * 2250 * * * * * * * 2324 * 2831 * 1154 * * * * 101 0 * * * * * * 5114 0 0 C 102 * 0 * * * * * * * * * * * * * * * * * * 102 0 * * 0 * * * 3308 0 0 //