HHsearch 1.5 NAME d1sxje1 FAM FILE d1sxje1 COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i d1sxje1.a3m DATE Tue Mar 9 00:19:23 2010 LENG 99 match states, 99 columns in multiple alignment FILT 35 out of 39 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4185 -0.3718 SEQ >ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHC >sa_dssp EDECCDCADDABECACEDDCEEACEDADDCAEEBCEEEBDCDCAADDABEBBCECEEBEEECCDCADECBEDBDEDCEEDEECBECACCAADDABECBE >ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC >ss_conf 972899999999999828999999999999999997268899999999999984227661331999999999967751388115899999999987519 >Consensus xpxWexxixxIaxxIvxeqsxxxlxxiRxkLyxLLxxxIpxxxIlxxLxxxllxxxxxxxxxkxxiixxaaxyexrlxxGsKxIxHLEaFvAxxMxxxx >d1sxje1 KPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD >UniRef50_A8BBJ5(248-367:373) Replication factor C, subunit 5 n=2 Tax=Giardia intestinalis RepID=A8BBJ5_GIALA E=8e-09 s/c=0.51 id=22% cov=99% -PEWETLCTNIASQVATARkmaaksaeaaragksakpeQSDKLDVIRVTLVEMLKKAIPADMILTKLYEGFKDQAKRMGQRSPQIllnlADLAMEYEARL IAGSNPLYHLEAFSFSSLREI- >UniRef50_B0EIK9(250-341:363) Replication factor C subunit, putative n=3 Tax=Entamoeba RepID=B0EIK9_ENTDI E=2e-07 s/c=0.61 id=24% cov=94% ---WREKLAEIVISMKK-ISSKEFEKKRDEVVEL-STIISADTILKTMFWYLM-ESKIDPKYKLEIPSIAMKHSHNMSLGTEPIYHIEAFITINLCSV- >UniRef50_Q5UQE8(248-338:370) Putative replication factor C small subunit L478 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RFCS2_MIMIV E=0.0006 s/c=0.50 id=25% cov=89% ----------VVESILECRTGKNIFkihnDIRTNIYNILITNIKGSEIINILVDKLIRKID-DDVINMNIIQYASKAEYNLTHGRRDITDIEYFISGVMQ EL- >UniRef50_Q4UIQ4(251-343:351) Replication factor C subunit, putative n=3 Tax=Piroplasmida RepID=Q4UIQ4_THEAN E=9e-19 s/c=1.02 id=27% cov=92% ---WEKNITQVVQSVVSSQTPSTLSAVRPQIYELLVCCIPGDLILENIVDQLV--PKVKPSLVPSVFHLAAHFSHTMKLGSKDIWHIEAFLAQIM---- >UniRef50_B9HF25(809-911:924) Predicted protein n=5 Tax=Magnoliophyta RepID=B9HF25_POPTR E=5e-18 s/c=0.90 id=28% cov=95% --GWEEVLVELATEILIDPSPNKLFSARGKLKRLLVDFVNPKLILLKYTFLIELHlqqklveqflKGVEANSRRELYYWHAYYDKRLPTGTTALLKLEEF VAKFM---- >UniRef50_B9IB37(570-691:725) Predicted protein n=2 Tax=Malpighiales RepID=B9IB37_POPTR E=3e-14 s/c=0.65 id=26% cov=95% --GWEDDIANIAKDMVEEQSPKQLYIIRGKLQNLIEHDVSPDFFFESLLGELKKHLDEPFQLQLdglhkdynrndgnmleisenELIFLRSRHEEAGKRl hdpARKNADHLfvriEEFIAKFM---- >UniRef50_C4M3A3(230-324:331) Activator 1 subunit, putative n=4 Tax=Entamoeba RepID=C4M3A3_ENTHI E=1e-13 s/c=0.81 id=26% cov=96% KPTWKISCELIVKTIVVTPNVEVIpKLIRPKLCEFIENGLSPSLILKEI-FTLCMNSNIDQLYKLGVVEIIHKFDKSLKQGQNPWIHVENAITALM---- >UniRef50_A5BCG7(369-452:494) Putative uncharacterized protein (Fragment) n=1 Tax=Vitis vinifera RepID=A5BCG7_VITVI E=2e-07 s/c=0.68 id=20% cov=80% --GWEEEFAEIAKKVIAEQSAKQWYNIKEKIKNLIAHNVPSEIIFQVSMLAVLqnlvgELKKLLDDXLPSTISDLCKYNLTLRRG--------------- ---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * 2277 * * * * 1164 * * * * 3285 2029 * * * * * 1 0 * * * * * * 3384 0 0 P 2 3191 * * * * * * * * * * * 479 * * * 3590 3473 * * 2 0 * * * * * * 3813 0 0 D 3 * * 1605 1621 * 1831 * * * * * * * * * * 3938 * * * 3 0 * * * * * * 4648 0 0 W 4 * * * * * * * * * * * * * * * * * * 0 * 4 0 * * * * * * 4907 0 0 I 5 * * * 575 * * * 5302 2737 * * * * 4204 4510 * * 4181 * * 5 0 * * * * * * 4907 0 0 I 6 4224 * 4035 2561 * * * 3655 2655 3086 * 3804 * * 3310 * 3327 3505 * * 6 0 * * * * * * 4907 0 0 V 7 4967 * 4035 3072 3782 * 4568 * 3504 2889 * 5129 * * * 4210 * 2125 * 2855 7 0 * * * * * * 4907 0 0 I 8 * 2390 * * 4567 * * 1314 * 2306 4665 * * * * * 4720 3549 * * 8 0 * * * * * * 4907 0 0 H 9 2372 * 2480 2970 * 5867 4261 * 3761 5300 4967 4353 * 3375 5425 5938 3725 4676 * * 9 62 4568 * 0 * * * 4907 1000 0 K 10 4498 * 3746 1575 * * * * 3051 4210 * 2599 * 3158 5985 4018 * 5938 * * 10 0 * * * * * * 4907 0 0 L 11 * * * * * * * 590 * 2856 4240 * * * * * 5468 3036 * * 11 0 * * * * * * 5018 0 0 T 12 833 5119 * * * 4494 * * * * * * * * * 4085 5355 1825 * * 12 0 * * * * * * 5018 0 0 R 13 3171 * 3910 4490 * 4053 4000 3598 2387 * 4615 4419 * 4007 4523 4468 3190 4904 * * 13 0 * * * * * * 5018 0 0 K 14 5468 4904 3942 3105 * 3846 * 3947 3939 3272 * 4539 4615 3960 5372 2292 4257 5013 * * 14 0 * * * * * * 5018 0 0 I 15 4904 * * * * * * 775 * 4813 3188 * * * * * * 2078 * * 15 60 * 4624 * * * * 5018 0 0 V 16 4436 * * * 3959 * * 2369 3228 2431 4894 * * * 4666 * * 1597 * * 16 0 * * * * 0 * 4954 0 1000 K 17 3048 5013 5213 2017 * * * 4744 2656 5119 5267 * * 5333 3172 4344 3540 4257 * * 17 62 * 4581 * * * * 5018 0 0 E 18 4344 4426 3115 1185 * 4772 5031 * * * * 3274 * 4117 * 3917 4193 * * * 18 0 * * * * 0 * 4932 0 1000 R 19 4624 * * * * * 4223 4581 4813 * * * 2795 1088 2225 * * * * * 19 121 3630 * 3471 136 * * 5018 1576 0 S 20 * * * * * * 5184 * 3689 4615 * 3616 * 3630 * 1154 2044 * * * 20 0 * * * * * * 5018 0 0 V 21 3620 * * * * 4490 * * * * * * 1127 * * 2631 3785 2454 * * 21 0 * * * * * * 5018 0 0 N 22 2922 * 4468 2278 * * * * 1710 * * 4018 * 3953 4008 3029 * * * * 22 0 * * * * * * 5018 0 0 S 23 4904 * * 4581 * 5013 * * 2463 * * 3555 * 2996 2246 4363 2393 4257 * * 23 0 * * * * * * 5018 0 0 L 24 * * * * 4581 * * 2142 * 777 3619 * * * * * * 5267 4617 * 24 78 4257 * 0 * * * 5018 1000 0 I 25 * * 4468 4581 2374 * 5510 3471 2662 2567 5267 * * 4616 * 4058 * 4181 * 3331 25 66 4490 * 2000 415 * * 5018 1000 0 E 26 3691 * 3311 1736 * * * 4535 3950 3026 * 4151 * 3161 4624 4744 * 4468 * * 26 38 * 5267 * * * * 5018 0 0 C 27 3891 3553 * * 4505 * * 1064 4551 * * * * * * 4560 * 2060 * * 27 0 * * * * * 0 4988 0 1000 R 28 * * * * * * * * 4581 * * * * * 62 * * * * * 28 0 * * * * * 0 4988 0 1000 A 29 3267 * 3393 3159 * 2296 * * 3830 5482 * * 3622 3542 * 4164 3516 3603 * * 29 0 * * * * * 0 4988 0 1000 V 30 * * 3928 4551 * * 4783 * 1214 4580 4040 4474 5157 5171 4508 4353 3291 5272 * * 30 0 * * * * * 0 4988 0 1000 L 31 * * * * 3090 * * 3126 * 520 5157 * * * * * * 4551 * * 31 0 * * * * * 0 4988 0 1000 Y 32 * 4341 * * 5472 * * * 3701 * * 5146 * 2993 * * * 3522 4889 794 32 0 * * * * * 0 5052 0 1000 D 33 * * 1849 1540 * * * 4584 4574 5472 5033 2993 * 4607 4751 * * 4717 * * 33 0 * * * * * 0 5052 0 1000 L 34 * * * * 4341 * * 3564 * 285 4467 * * * * * * * * * 34 62 * 4579 * * * 0 5052 0 1000 L 35 * * * * * * * 2055 * 513 4535 * * * * * 6001 * * * 35 0 * * * * 726 1338 4966 0 1500 A 36 3181 * * 3230 * * * 3564 4467 * * 3866 * 4584 * 2168 3703 2036 * * 36 0 * * * * * 0 5052 0 1000 H 37 5146 5215 4751 5228 * * 1461 * 4467 * * 2633 * 4178 * 3382 3542 4894 4623 * 37 0 * * * * * 0 5052 0 1000 C 38 4467 1186 4577 * 3970 3167 * 4579 * 4894 * 2463 * * * 4598 * * * * 38 0 * * * * * 0 5052 0 1000 I 39 * * * * 4889 * * 620 * 3457 * * * * * * * 2155 * * 39 0 * * * * * 0 5052 0 1000 P 40 4724 4584 5720 4623 * * * * 4507 * * 4751 768 * * 2694 4717 * * * 40 0 * * * * * 0 5052 0 1000 A 41 1798 * * * * 2697 * * * * * * 1289 * * 3214 * 4607 * * 41 0 * * * * * 0 5052 0 1000 N 42 * * 1696 2720 * * 4717 * 2958 * * 5299 * 4584 5033 2624 3146 * * * 42 0 * * * * * 0 5052 0 1000 I 43 * 4717 * 3653 3338 * * 2231 * 1968 4467 * * * 4607 * 2545 4124 * * 43 0 * * * * * 0 5052 0 1000 I 44 * * * * 4577 * * 356 * * * * * * * * 4889 2803 * * 44 0 * * * * * 0 5052 0 1000 L 45 * * * * 2477 * * 3124 * 671 4000 * * * * * * * * 6029 45 0 * * * * * 0 5052 0 1000 K 46 * * * 3861 3595 4894 4889 * 1425 3686 4717 4507 * 3182 4815 * 4467 4110 * * 46 33 * 5450 * * * 0 5052 0 1000 E 47 * * * 2058 * 4123 * 4475 2332 * * 3668 * * 3826 4472 2170 4557 * * 47 0 * * * * * 0 5048 0 1397 L 48 * * * * * * * 3126 * 564 2970 * * * * 4557 * * * 4681 48 75 * 4304 * * 0 * 5048 0 1397 T 49 3777 * * * 4514 * 4518 * * 2310 3310 * * * * * 2074 2219 * 3559 49 30 5592 * 1585 585 0 * 4944 1000 1000 F 50 * * 3454 2767 2599 4518 3986 4453 3588 3981 * 4618 * 4633 5046 4444 4936 * 3647 5153 50 101 * 3883 * * * * 5075 0 0 S 51 3117 * * 2885 5284 2671 * * 3288 3837 * 3903 * 4145 4041 3674 3510 * * 4501 51 0 * * * * * 0 5002 0 1653 L 52 * * * 5238 2902 * * 3169 * 639 * * * * * * * 3532 * * 52 24 * 5902 * * 0 * 5002 0 1653 L 53 * 4340 * 4759 4908 * * 3017 2693 1352 4031 * * * 5278 * * 3287 5578 * 53 436 3769 2414 3192 167 * 0 5090 1727 1000 D 54 * * 2497 4379 4938 * 3815 4480 4232 3161 3189 3554 * * 2667 3719 * 4920 * * 54 142 4755 4147 0 * 1958 429 4930 1000 2571 V 55 3818 * * 3772 * 4775 2486 3968 3387 2531 * 4098 * 2417 * * * 3996 * * 55 218 3458 4349 2541 272 412 2009 5021 1761 2546 E 56 3085 * 3029 2657 * * * 3190 2125 4323 * * 3916 * * 3016 * 5474 * * 56 0 * * * * 676 1419 5034 0 1909 T 57 5516 * 2461 * * 3888 3914 * 2039 5380 5884 2808 5124 5116 5670 4116 4095 4566 * * 57 104 * 3841 * * 0 * 5016 0 1000 L 58 4564 3962 * 3218 4951 * 5128 2310 5533 2569 * 5056 4830 * 4423 4704 5601 2621 * * 58 32 5533 * 1585 585 0 * 4956 1000 1639 N 59 5560 * 1231 4777 * 4944 * 4785 3769 4653 4497 2746 4522 5214 3822 * * * * * 59 70 5616 5198 2585 263 * * 5075 1000 0 T 60 4748 * 2031 5305 4511 3075 * * 4582 4804 4654 * 3436 4337 * 4016 2638 4362 * * 60 0 * * * * * 0 5060 0 1000 T 61 3758 * 4620 3790 4993 * 5130 4582 3877 4337 * 4038 * 3180 3061 2675 3923 3638 * * 61 0 * * * * 0 * 5060 0 1000 N 62 * * * 4793 * 5114 5387 2408 * 1770 4743 3882 * 5368 3671 4692 5116 4026 * 3432 62 42 5114 * 1000 1000 * * 5002 1000 0 K 63 5447 * * * * * 5357 * 854 3184 * 4515 * 2848 4777 4497 * 5274 * * 63 170 * 3166 * * * * 5075 0 0 S 64 3934 * * * * 5395 4421 5262 5142 2454 2808 * 2248 5002 2996 4113 6182 * * 4445 64 68 4442 * 4322 74 1585 585 4891 1000 2009 S 65 4039 * 3512 1643 * 4295 * * * * * 4381 5429 2157 5076 2949 * * * 5280 65 103 4816 4897 2807 222 0 * 4968 1000 1583 I 66 * * * * * * * 1223 * 2297 * * * * * * 3631 1799 * * 66 68 4449 * 2000 415 * 0 5035 1000 1000 I 67 3283 * * * 5239 4557 * 1408 * 4639 5292 * 4566 * * * 4578 2077 * 3947 67 0 * * * * 0 * 5035 0 1000 E 68 5198 * 3634 2667 3998 * 3585 * 3462 * * * * 2454 5165 3115 * 4584 * 2937 68 0 * * * * * * 5075 0 0 Y 69 3571 * 4653 * 3625 * 5050 3476 * 2092 5569 * * 4644 * 4641 4852 * 2258 3388 69 0 * * * * * * 5075 0 0 S 70 609 * * * * * 3979 3725 * 4653 * * * * 4522 4633 3612 * * * 70 0 * * * * * * 5075 0 0 S 71 1109 4653 * * * * 4357 * * 3225 3550 * * 4584 * 2226 * * * * 71 0 * * * * * * 5075 0 0 V 72 * * * 4497 3412 * 2917 3713 1607 4668 * 5357 * * 4522 * 4584 3737 * 3311 72 0 * * * * * * 5075 0 0 F 73 4515 4641 * * 1853 * 3153 * * * * * * * * * * * * 924 73 0 * * * * * * 5075 0 0 D 74 * * 2061 966 * * * * * * * 3618 * 4625 * 2981 * * * * 74 61 4584 * 3000 193 * * 5075 1000 0 E 75 3664 * * 1840 * * 1582 * 3156 4653 * 3881 * * * * * 4505 * 4515 75 0 * * * * * * 5075 0 0 R 76 4522 * * * * * * * * 4194 * 3238 * * 686 4357 2996 * * * 76 0 * * * * * * 5075 0 0 L 77 4641 5733 * * * 4522 * 2938 4584 1171 1961 * * * * * 5357 * * * 77 0 * * * * * * 5075 0 0 S 78 * 5165 * * * * * 4497 1746 * * 5168 3979 3132 2089 3251 4515 * * 4625 78 0 * * * * * * 5075 0 0 L 79 4497 5447 * * * * 4515 * 4944 1578 2954 * * 2328 3289 * 4777 4189 * * 79 64 4522 * 2000 415 * * 5075 1000 0 G 80 4522 * * * * 129 * * * * * * * * 4584 * * * * * 80 0 * * * * * * 5075 0 0 N 81 5157 * * * * * * * * * 4997 2793 * 4318 3453 1137 2321 * * * 81 0 * * * * * * 5002 0 0 K 82 * * * 4554 * * * * 502 * * 3391 * 4499 4466 5157 4692 * * * 82 0 * * * * * * 5002 0 0 A 83 2902 * 2549 3689 * 3644 4599 * 5264 * * 4440 1664 5671 * 4152 * 4918 * * 83 65 4499 * 3700 115 * * 5002 1000 0 I 84 4440 * * * 4499 * * 476 * 3159 * * * * * * * 5116 4318 * 84 0 * * * * * * 5002 0 0 F 85 * * 4440 * 1667 * * 3164 * 3088 5635 * * * * * 4466 3525 4173 2307 85 0 * * * * * * 5002 0 0 H 86 * * 4466 * * * 245 * 3906 * * * * * 4499 * * * * * 86 0 * * * * * * 5002 0 0 L 87 * * * * * * * 2347 * 490 * * * * 4599 * * 4318 * * 87 68 4440 * 2000 415 * * 5002 1000 0 E 88 * * * 0 * * * * * * * * * * * * * * * * 88 0 * * * * * * 5002 0 0 G 89 774 * * 2671 * 3039 * * * * * 4318 * * * * 4599 * * 4466 89 0 * * * * * * 5002 0 0 F 90 4318 * * * 327 * * * * 4551 * * * * * 4599 * * 5264 4551 90 0 * * * * * * 5002 0 0 I 91 3131 4793 * * * * * 1682 * 3494 6251 * * * * 4467 * 1355 * * 91 0 * * * * * * 5002 0 0 A 92 554 * * * 4467 * * 3980 * * * * * * * 4466 2597 * * * 92 0 * * * * * * 5002 0 0 K 93 3794 * * 4551 * 3598 * 4554 1626 * * 4551 * 2482 4060 2948 * * * 5325 93 0 * * * * * * 5002 0 0 V 94 4907 3918 * * 1635 * * 5203 * 3430 * 4554 * * * 3708 * 1850 * 4005 94 0 * * * * * * 5002 0 0 M 95 * * * * * * * 4793 * 3510 254 * * * * * * 4743 * * 95 0 * * * * * * 5002 0 0 C 96 * 1119 * * * * * * * * * * * 3293 1565 * * 3325 * * 96 0 * * * * * * 3797 0 0 C 97 2846 3883 * 1824 * * * 4218 * 4119 * * * * * 3176 * 1792 * * 97 0 * * * * * * 3666 0 0 L 98 * * * * * * * 2336 * 930 * * * * * * * 2264 * 3859 98 0 * * * * * * 3365 0 0 D 99 * * 1482 639 * * * * * * * * * * * * * * * * 99 0 * * 0 * * * 2056 0 0 //